View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1802_high_6 (Length: 529)
Name: NF1802_high_6
Description: NF1802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1802_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 22 - 509
Target Start/End: Complemental strand, 35725755 - 35725272
Alignment:
| Q |
22 |
taccacacaaagtatagagatctattgggagagagagcaccttcatgtcaaacattgaggaaaggagtatttggagctggagctgctttcattgttctta |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35725755 |
taccacacaaagtatagagatctattgggagagagagcaccttcatgtcaaacattgaggaaaggagtatttggagctggagctgctttcattgttctta |
35725656 |
T |
|
| Q |
122 |
caggaatagtctctgagctttactatgttaatttttcaaaagctaataatggtggagtccctccctatgctagagacacaggtgtgaccatgagtaattt |
221 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35725655 |
caggaatagtctctgagctttactatgttagtttttcaaaagctaataatggtggagtccctccctatgctagagacacaggtgtgaccatgagtaattt |
35725556 |
T |
|
| Q |
222 |
gtaaatttaatgcaatgtatcctacttaggactttgggaggaagtgtattactattaacttgacttattacatggatgtgaattgtgggagtctacttgt |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
35725555 |
gtaaatttaatgcaatgtatcctacttaggactttgggaggaagtgtattactattaacttgacttattacatggatgtgaattgtgggagtcta----t |
35725460 |
T |
|
| Q |
322 |
aattatgaagctaggttgaaaaagagtttatttagagtttagaagactatgatctttaattaaatttggattgctttgactcttaaatcatatcacaata |
421 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35725459 |
aattatgaagctaggttgaaaaagagtttgtttagagtttagaagactatgttctttaattaaatttggattgctttgactcttaaatcatatcacaata |
35725360 |
T |
|
| Q |
422 |
agtaatgtctcattgcgtttcgaatcttacttatttataccccacctataagaagtaagaatcacaatggagggtaggatgatttata |
509 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35725359 |
agtaatgtctcattgcgtttcgaatcttacttatttataccccacctataagaagtaagaatcacaatggagggtaggatggtttata |
35725272 |
T |
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