View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1802_high_8 (Length: 481)
Name: NF1802_high_8
Description: NF1802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1802_high_8 |
 | |
|
| [»] scaffold0050 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 354 - 468
Target Start/End: Original strand, 14193005 - 14193117
Alignment:
| Q |
354 |
tggcctggttgttgtttgggagtccttctttgtaaactttgggttagtgtcgggtgttctcctgttatttcttaactggtgtgtaatttccctcaatcat |
453 |
Q |
| |
|
|||||| |||||||||| |||| ||||||||||| ||||||||||||||| || ||||||||| ||||||||| |||||||| |||||||||||||| |
|
|
| T |
14193005 |
tggcctagttgttgtttcggagaccttctttgtagactttgggttagtgtgggttgttctccttgtatttcttaggtggtgtgt--tttccctcaatcat |
14193102 |
T |
|
| Q |
454 |
agttttgcttggttc |
468 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
14193103 |
atatttgcttggttc |
14193117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 354 - 467
Target Start/End: Original strand, 25646753 - 25646864
Alignment:
| Q |
354 |
tggcctggttgttgtttgggagtccttctttgtaaactttgggttagtgtcgggtgttctcctgttatttcttaactggtgtgtaatttccctcaatcat |
453 |
Q |
| |
|
|||||| |||||||||| ||| ||||||||||| ||||||||||||||| || ||||||||| ||||||||| |||||||| |||||||||||||| |
|
|
| T |
25646753 |
tggcctagttgttgttttagagaccttctttgtagactttgggttagtgtgggttgttctccttgtatttcttaggtggtgtgt--tttccctcaatcat |
25646850 |
T |
|
| Q |
454 |
agttttgcttggtt |
467 |
Q |
| |
|
|| ||| ||||||| |
|
|
| T |
25646851 |
agattttcttggtt |
25646864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 8527475 - 8527429
Alignment:
| Q |
1 |
ttaatgtagtttctttcattcatagctgttgattttaagatcaaaac |
47 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8527475 |
ttaatgtagtttctttcattcatagctgttgattttaagatcaaaac |
8527429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 225 - 267
Target Start/End: Complemental strand, 8523269 - 8523227
Alignment:
| Q |
225 |
ctcatttgataacctcctgatagtatcttccatgtttctctat |
267 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
8523269 |
ctcatttcataacctcctgatagtatcttccatgtttctctat |
8523227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0050 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 468
Target Start/End: Original strand, 35863 - 35977
Alignment:
| Q |
351 |
ccgtggcctggttgttgtttgggagtccttctttgtaaactttgggttagtgtcgggtgttctcctgttatttcttaactggtgtgtaatttccctcaat |
450 |
Q |
| |
|
||||||| | |||||||||| |||| | ||||||||| |||||| |||||||| | || |||||| ||||||||| |||||||| ||||||||| | |
|
|
| T |
35863 |
ccgtggcatagttgttgttttggaggc-ttctttgtagactttgagttagtgtggattgctctccttgtatttcttaggtggtgtgt--tttccctcatt |
35959 |
T |
|
| Q |
451 |
catagttttgcttggttc |
468 |
Q |
| |
|
| ||| |||||||||||| |
|
|
| T |
35960 |
cttagatttgcttggttc |
35977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University