View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1802_high_9 (Length: 471)
Name: NF1802_high_9
Description: NF1802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1802_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 402; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 19 - 457
Target Start/End: Complemental strand, 47721348 - 47720910
Alignment:
| Q |
19 |
agggaggaagaaggaagaatggggtaatggttttgttggcttttcaattggcagcgaatactatgatctcttcaataccccacctgcaataccccaccat |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47721348 |
agggaggaagaaggaagaatggggtaatggttttgttggcttttcaattggcagcgaatactatgatctcttcaataccccacctgcaataccccaccat |
47721249 |
T |
|
| Q |
119 |
ggacttatcttttttatctgagtttgatcctttcgaaagttaggttcaggcaagggctcacttcacataatgccaacatcttcgttgatgaggtgtggaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47721248 |
ggacttatcttttttatctgagtttgatcctttcgaaagttaggttcaggcaagggctcacttcacataatgccaacatcttcgttgatgaggtgtggaa |
47721149 |
T |
|
| Q |
219 |
gtcttggaaaaccacaactctagttgtgtttctaatactacgatcttgtcttatcatcttacaatggaagctaacaacatgtgtgttattcataacatga |
318 |
Q |
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||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47721148 |
gtcttggaaaaccacaactttagttgtgtttctaatactgcgatctcgtcttatcatcttacaatggaagctaacaacatgtgtgttattcataacatga |
47721049 |
T |
|
| Q |
319 |
cttgcttttctagttcaccgaatacaagtcttatggacaaataggtttaatcaaattcttctcatcacaattgcatcattaataattttgatgacaannn |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47721048 |
cttgcttttctagttcaccgaatacaagtcttatggacaaataggtttaatcaaattcttctcatcacaattgcatcattaataattttgatgacaattt |
47720949 |
T |
|
| Q |
419 |
nnnnaaagatgctaaattaattcatccaaattgcacagg |
457 |
Q |
| |
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||||| ||||||||||||||||||||||||||||| |
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| T |
47720948 |
ttttaaagaagctaaattaattcatccaaattgcacagg |
47720910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 19 - 457
Target Start/End: Complemental strand, 47728340 - 47727902
Alignment:
| Q |
19 |
agggaggaagaaggaagaatggggtaatggttttgttggcttttcaattggcagcgaatactatgatctcttcaataccccacctgcaataccccaccat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47728340 |
agggaggaagaaggaagaatggggtaatggttttgttggcttttcaattggcagcgaatactatgatctcttcaataccccacctgcaataccccaccat |
47728241 |
T |
|
| Q |
119 |
ggacttatcttttttatctgagtttgatcctttcgaaagttaggttcaggcaagggctcacttcacataatgccaacatcttcgttgatgaggtgtggaa |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47728240 |
ggacttatcttttttatctgagtttgatcctttcgaaagttaggttcaggcaagggctcacttcacataatgccaacatcttcgttgatgaggtgtggaa |
47728141 |
T |
|
| Q |
219 |
gtcttggaaaaccacaactctagttgtgtttctaatactacgatcttgtcttatcatcttacaatggaagctaacaacatgtgtgttattcataacatga |
318 |
Q |
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||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47728140 |
gtcttggaaaaccacaactttagttgtgtttctaatactgcgatctcgtcttatcatcttacaatggaagctaacaacatgtgtgttattcataacatga |
47728041 |
T |
|
| Q |
319 |
cttgcttttctagttcaccgaatacaagtcttatggacaaataggtttaatcaaattcttctcatcacaattgcatcattaataattttgatgacaannn |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47728040 |
cttgcttttctagttcaccgaatacaagtcttatggacaaataggtttaatcaaattcttctcatcacaattgcatcattaataattttgatgacaattt |
47727941 |
T |
|
| Q |
419 |
nnnnaaagatgctaaattaattcatccaaattgcacagg |
457 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |
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|
| T |
47727940 |
ttttaaagaagctaaattaattcatccaaattgcacagg |
47727902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 120 - 350
Target Start/End: Complemental strand, 47755023 - 47754796
Alignment:
| Q |
120 |
gacttatcttttttatctgagtttgatcctttcgaaagttaggttcaggcaagggctcacttcacataatgccaacatcttcgttgatgaggtgtggaag |
219 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||| |
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| T |
47755023 |
gacttatcttttttacatgagtttgatcctttcgaaagttaggttcaggcaaaggctcacttcacataataccaacatcttcgttgatgaggcgtggaag |
47754924 |
T |
|
| Q |
220 |
tcttggaaaaccacaactctagttgtgtttctaatactacgatcttgtcttatcatcttacaatggaagctaacaacatgtgtgttattcataacatgac |
319 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| || |
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| T |
47754923 |
tcttggaaaaccacaagtctaattgtgtttctaatactacgatctcgtcttatcatcttacaatggaagctaacaacatgtgtgttgctcataac---ac |
47754827 |
T |
|
| Q |
320 |
ttgcttttctagttcaccgaatacaagtctt |
350 |
Q |
| |
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|||||||||| |||||||||||||||||||| |
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| T |
47754826 |
ttgcttttctggttcaccgaatacaagtctt |
47754796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 160 - 415
Target Start/End: Complemental strand, 47709855 - 47709603
Alignment:
| Q |
160 |
aggttcaggcaagggctcacttcacataatgccaacatcttcgttgatgaggtgtggaagtcttggaaaaccacaactctagttgtgtttctaatactac |
259 |
Q |
| |
|
||||||| |||| ||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
47709855 |
aggttcaagcaaaggctcacttcacataatgctaacatcttcgatgatgaggtgtggtggtcttggaaaaccacaaatctagttgtgtttctaatactac |
47709756 |
T |
|
| Q |
260 |
gatcttgtcttatcatcttacaatggaagctaacaacatgtgtgttattcataacatgacttgcttttctagttcaccgaatacaagtcttatggacaaa |
359 |
Q |
| |
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|| | ||||||||||||||| ||||||||| ||||| | ||||| | | |||| ||||||| ||||||||| || ||||||| | | |||||| |
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|
| T |
47709755 |
gaacccgtcttatcatcttactatggaagctcacaacttctgtgtaactgttaac---tcttgcttctctagttcatcggcaacaagtcatctcgacaaa |
47709659 |
T |
|
| Q |
360 |
taggtttaatcaaattcttctcatcacaattgcatcattaataattttgatgacaa |
415 |
Q |
| |
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| |||| ||| ||||||||| ||||||||||| ||||| |||| |||||||||| |
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|
| T |
47709658 |
tgggttcaatggaattcttctaatcacaattgcgtcattcttaatgttgatgacaa |
47709603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 47714200 - 47714122
Alignment:
| Q |
19 |
agggaggaagaaggaagaatggggtaatggttttgttggcttttcaattggcagcgaatactatgatctcttcaatacc |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
47714200 |
agggaggaagaaggaagaatggggtaatggttttgttggcttttcaattggcagcgaatattatgatctcttcaatacc |
47714122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 412
Target Start/End: Complemental strand, 47753892 - 47753844
Alignment:
| Q |
363 |
gtttaatcaaattcttctcatcacaattgcatcattaataattttgatga |
412 |
Q |
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||||||||||||||||||| |||||||||| |||||| |||| ||||||| |
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| T |
47753892 |
gtttaatcaaattcttctcttcacaattgc-tcattattaatgttgatga |
47753844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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