View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1802_low_11 (Length: 443)

Name: NF1802_low_11
Description: NF1802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1802_low_11
NF1802_low_11
[»] scaffold0147 (1 HSPs)
scaffold0147 (1-426)||(20087-20512)


Alignment Details
Target: scaffold0147 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Complemental strand, 20512 - 20087
Alignment:
Q  1 aagaggagaagaaattgaaggtttatttttgtagtaggacacattcgcagctttcacagtttgtaaaggagttgagaaagacagtgtttgctgatgaaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||    
T  20512 aagaggagaagaaattgaaggtttatttttgtagtaggacacattcgcagctttcacagtttgtaaaggagttgaggaaaacggtgtttgctgatgaaat 20413  T
Q  101 gggtgttgtgagtttaggttccaggaaaaatctttgtattaatcaaggtatggaactttgcttaatctggaaagttattttttggtttccttttgattac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20412 gggtgttgtgagtttaggttccaggaaaaatctttgtattaatcaaggtatggaactttgcttaatctggaaagttattttttggtttccttttgattac 20313  T
Q  201 ttgattatgatcatgttgttacaaatgtttgtgttacagaggtacttgcacttggaaactcgtctcgcataaatgagagatgcttggaactccnnnnnnn 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  20312 ttgattatgatcatgttgttacaaatgtttgtgttacagaggtacttgcacttggaaactcgtctcgcataaatgagagatgcttggaactccaaaagaa 20213  T
Q  301 nnnnnnnnntgatgctacaaaagttaaggtgtgtggagtttggattttagaatatatactgtggtggtttggaacaacttcttagacactcatgaaaaca 400  Q
             ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  20212 aaagaaaaatgatgctacaaaagttaaggtgtgtggagtttggattttagaatatagactgtggtggtttggaacaacttcttagacactcatgaaaaca 20113  T
Q  401 gaaatattaaaagaatattgcaatag 426  Q
    ||||||||||||||||||||||||||    
T  20112 gaaatattaaaagaatattgcaatag 20087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University