View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1802_low_15 (Length: 398)
Name: NF1802_low_15
Description: NF1802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1802_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 50 - 304
Target Start/End: Complemental strand, 5735132 - 5734872
Alignment:
| Q |
50 |
accggtagcctatctttttctttcccttttcgaaggtacaatagtaaaaatttattcaatatttaagataatgttttgtttgcatgttagcgtaaggatg |
149 |
Q |
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| T |
5735132 |
accggtagcctatctttttctttcccttttcgaaggtacaataataaatatttattcaatatttaagataatgttttgtttgcatgttagcgtaaggatg |
5735033 |
T |
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| Q |
150 |
cacatctaaatcaaccaaggtataatcat----ttttcttttgaggaaaaccaaggtataatcattaatcaccacctgttttgcaaggacatgtcatact |
245 |
Q |
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| T |
5735032 |
cacatctaaatcaaccaaggtataatcattttttttttttttgaggaaaaccaaggtataatcattaatcaccacctgttttgcaaggacatgtcatact |
5734933 |
T |
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| Q |
246 |
cataaaccaaatcaacatattctcattctaaga--tgtgatagtcattattttattggatg |
304 |
Q |
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| T |
5734932 |
cataaaccaaatcaacatattctcattctaatatgtgtgatagtcagtattttattggatg |
5734872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 212 - 294
Target Start/End: Complemental strand, 5716631 - 5716551
Alignment:
| Q |
212 |
aatcaccacctgttttgcaaggacatgtcatactcataaaccaaatcaacatattctcattctaagatgtgatagtcattatt |
294 |
Q |
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| T |
5716631 |
aatcaccacctgttttgcaagtacatgtcatactcataaaccaaattaac--actctctttctaagatgtcatactcattatt |
5716551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 212 - 292
Target Start/End: Complemental strand, 5683150 - 5683072
Alignment:
| Q |
212 |
aatcaccacctgttttgcaaggacatgtcatactcataaaccaaatcaacatattctcattctaagatgtgatagtcatta |
292 |
Q |
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| T |
5683150 |
aatcaccacctgttttgcaagtacatgtcatactcataaaccaaattaac--actctctttctaagatgtcatactcatta |
5683072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 90
Target Start/End: Complemental strand, 5716805 - 5716773
Alignment:
| Q |
58 |
cctatctttttctttcccttttcgaaggtacaa |
90 |
Q |
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| T |
5716805 |
cctatctttttctttcccttttcgaaggtacaa |
5716773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 87
Target Start/End: Complemental strand, 5683318 - 5683289
Alignment:
| Q |
58 |
cctatctttttctttcccttttcgaaggta |
87 |
Q |
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| T |
5683318 |
cctatctttttctttcccttttcgaaggta |
5683289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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