View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1802_low_19 (Length: 356)
Name: NF1802_low_19
Description: NF1802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1802_low_19 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 9 - 340
Target Start/End: Original strand, 5880875 - 5881203
Alignment:
| Q |
9 |
gaataaatttagaactggaattgatgaacaacccatatttattagtgtcgaataaaaaatggggcgtgaccaagtggtatggcaacgggttttggtcccg |
108 |
Q |
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| T |
5880875 |
gaataaatttagaattggaattgatgaacaacccatatttattagtgtcgaataaaaaatggggcgtggccaagtggtaaggcaacgggttttggtcccg |
5880974 |
T |
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| Q |
109 |
ttattcggaggttcgaacccttccgtcccagatcatatctattaacgatgtgatnnnnnnnnngcaacgtgcaacttgaaaaacatgattaaattagttg |
208 |
Q |
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| T |
5880975 |
ttattcagaggttcgaacccttccgtccgagatcatatctattaacgatgtgat--aaaaaaagcaacgtgcaacttgaaaaacatgattaaattagttg |
5881072 |
T |
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| Q |
209 |
tggattcttacatccgccattttatcgaatagaattgattatatagaaatcgagatccacttggctcgacatcagttatt---atgtgccactagaattc |
305 |
Q |
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| T |
5881073 |
tggattcttacatccgccattttatcgaatagaattgat--tatagaaatcgagatc--agaggctcgacatcagttattatgatgtgccactagaattc |
5881168 |
T |
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| Q |
306 |
ggtgttttaggggacactagaaggatcgatgatag |
340 |
Q |
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| T |
5881169 |
ggtgttttagaggacgctagaaggattgatgatag |
5881203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 9 - 144
Target Start/End: Complemental strand, 18063059 - 18062918
Alignment:
| Q |
9 |
gaataaatttagaactggaattgatgaacaacccata------tttattagtgtcgaataaaaaatggggcgtgaccaagtggtatggcaacgggttttg |
102 |
Q |
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| T |
18063059 |
gaataaatttagaactggaattgacgaacaacccataatagtatttagtaatgtcgaatcctaaatggggcgtggccaagcggtaaggcgacgggttttg |
18062960 |
T |
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| Q |
103 |
gtcccgttattcggaggttcgaacccttccgtcccagatcat |
144 |
Q |
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| T |
18062959 |
gtcccgttattcgaaggttcgaatccttccgtcccaggtcat |
18062918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 46 - 141
Target Start/End: Complemental strand, 206644 - 206544
Alignment:
| Q |
46 |
tttattagtgtcgaataaa-----aaatggggcgtgaccaagtggtatggcaacgggttttggtcccgttattcggaggttcgaacccttccgtcccaga |
140 |
Q |
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| T |
206644 |
tttattagtgtcgcataaaacccgaaatggggcgtggccaagtggtaaggcagcgggttttggtcccgttactcggaggttcgaatccttccgtcccaga |
206545 |
T |
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| Q |
141 |
t |
141 |
Q |
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| T |
206544 |
t |
206544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 151
Target Start/End: Complemental strand, 34883641 - 34883554
Alignment:
| Q |
64 |
aaaatggggcgtgaccaagtggtatggcaacgggttttggtcccgttattcggaggttcgaacccttccgtcccagatcatatctatt |
151 |
Q |
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| T |
34883641 |
aaaatggggtgtggccaagcggtaaggcgacgggttttggttctgttattcgaaggtttgaatcctttcgtcccaggtcatatatatt |
34883554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 111
Target Start/End: Original strand, 23931935 - 23931999
Alignment:
| Q |
47 |
ttattagtgtcgaataaaaaatggggcgtgaccaagtggtatggcaacgggttttggtcccgtta |
111 |
Q |
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| T |
23931935 |
ttattagtgtcgaattgaaaatggggagtggccaagtgataaggcaatgggttttggtctcgtta |
23931999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 18688799 - 18688763
Alignment:
| Q |
9 |
gaataaatttagaactggaattgatgaacaacccata |
45 |
Q |
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| T |
18688799 |
gaataaatttagaactggaattgacgaacaacccata |
18688763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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