View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1802_low_2 (Length: 632)

Name: NF1802_low_2
Description: NF1802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1802_low_2
NF1802_low_2
[»] chr8 (5 HSPs)
chr8 (1-323)||(27513364-27513662)
chr8 (326-498)||(27513615-27513794)
chr8 (208-305)||(8675247-8675345)
chr8 (376-458)||(8675163-8675245)
chr8 (581-610)||(27513869-27513898)
[»] chr1 (6 HSPs)
chr1 (1-265)||(24036319-24036578)
chr1 (326-459)||(24036782-24036919)
chr1 (335-458)||(39210058-39210165)
chr1 (257-317)||(24036763-24036823)
chr1 (285-323)||(39210127-39210165)
chr1 (581-610)||(39209936-39209965)
[»] chr2 (1 HSPs)
chr2 (345-457)||(38950770-38950885)
[»] chr3 (1 HSPs)
chr3 (364-458)||(9461195-9461298)
[»] chr6 (3 HSPs)
chr6 (341-407)||(18331879-18331945)
chr6 (409-458)||(18331979-18332028)
chr6 (290-325)||(18331878-18331913)


Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-104; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 27513364 - 27513662
Alignment:
Q  1 agatgcggttcaagatgaaatcaaactttttcgaatcactaatcaaaacggattagtgtttttgaatcggatggtttctgtaattgaacctttaagactc 100  Q
    |||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27513364 agatgcggttcaagatgaaatcaaactttttcgaa------------acggattagtgtttttgaatcggatggtttctgtaattgaacctttaagactc 27513451  T
Q  101 aatgattgagattgaggagaatcagaaggcttagggtgagaatctgaaatcgttaatgttgaaagaaggttagaggatcgttaatcatcatgctctggaa 200  Q
    |||| |            ||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||    
T  27513452 aatggt------------gaatcagaaggcttagggtgagaatctgaaatctttaatggtgaaagaaggttagtggatcgttaatcatcatgctctggaa 27513539  T
Q  201 tttgtaacatatcatagtttatttttgtcttcaaaatcctaatttaaacctcacattataacaaatgattataccaataaccaaaatatatattctacac 300  Q
    || | | |||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  27513540 ttagcagcatatcatagttgatttttctcttcaaaatcctaattcaaacctcacattataacaaatgactataccaataaccaaaatatatattctacac 27513639  T

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Target: chr8; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 326 - 498
Target Start/End: Original strand, 27513615 - 27513794
Alignment:
Q  326 aataaccaaaatatgtattctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaattcaaaaaactcaacctctt 425  Q
    |||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27513615 aataaccaaaatatatattctacactcacatcattgaaatctaatctattcatattcaaattagttcaaaacactcaaaattcaaaaaactcaacctctt 27513714  T
Q  426 catcatcaggcttgcagatagtttcatcaact-------tattttcaaggtcttcggcaccttcttctctgcaagctacg 498  Q
    ||||||||||||||||| ||||||||||||||       |||||||||||||||||||||||||||||||| ||||||||    
T  27513715 catcatcaggcttgcaggtagtttcatcaacttcccttgtattttcaaggtcttcggcaccttcttctctggaagctacg 27513794  T

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Target: chr8; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 208 - 305
Target Start/End: Complemental strand, 8675345 - 8675247
Alignment:
Q  208 catatcatagtttattttt-gtcttcaaaatcctaatttaaacctcacattataacaaatgattataccaataaccaaaatatatattctacactcaca 305  Q
    ||||||||||||||||||| || |||||||||||||||  || |||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  8675345 catatcatagtttattttttgttttcaaaatcctaattataatctcacagtataacaaatgattataacaataaacaaaatatatattctacactcaca 8675247  T

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Target: chr8; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 376 - 458
Target Start/End: Complemental strand, 8675245 - 8675163
Alignment:
Q  376 catattcaaattagttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatcaggcttgcagatagtttcatcaactt 458  Q
    |||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||| ||||||||||    
T  8675245 catattgaaattaggtcaaaacaatcaaaatttaaaaaactcaacctcttcatcatcaggcttgcaaacagtctcatcaactt 8675163  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 581 - 610
Target Start/End: Original strand, 27513869 - 27513898
Alignment:
Q  581 acctcttcaccgagctcgatagctctttca 610  Q
    ||||||||||||||||||||||||||||||    
T  27513869 acctcttcaccgagctcgatagctctttca 27513898  T

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Target: chr1 (Bit Score: 124; Significance: 2e-63; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 24036319 - 24036578
Alignment:
Q  1 agatgcggttcaagatgaaatcaaactttt-tcgaatcactaatcaaaacggattagtgtttttgaatcggatggtttctgtaattgaacctttaagact 99  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||  ||||||| ||||||||||||||||||    
T  24036319 agatgcggttcaagatgaaatcaaacttttttcgaatcactaatcaaaactgattagtgtttttgaatcagaaagtttctgaaattgaacctttaagact 24036418  T
Q  100 caatgattgagattgaggagaatcagaaggcttagggtgagaatctgaaatcgttaatgttgaaagaaggttagaggatcgttaatcatcatgctctgga 199  Q
    ||||      ||| |||||||||||  |||||| || |||||||||||||||||||||| |||| || |||| | | |||||||||||||| ||||||||    
T  24036419 caat------gatggaggagaatcaacaggctt-ggatgagaatctgaaatcgttaatggtgaaggatggtttgtgaatcgttaatcatcaggctctgga 24036511  T
Q  200 atttgtaacatatcatagttta-tttttgtcttcaaaatcctaatttaaacctcacattataacaaa 265  Q
    |||   | |||||||||||||| ||||| ||||||||||||||||| ||| |||||| |||||||||    
T  24036512 attaacatcatatcatagtttattttttctcttcaaaatcctaattcaaatctcacagtataacaaa 24036578  T

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Target: chr1; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 326 - 459
Target Start/End: Original strand, 24036782 - 24036919
Alignment:
Q  326 aataaccaaaatatgtattctacactcacaacattggaatctaatctattcatattcaaa-ttagttcaaaacaatcaaaattcaaaaaactcaacctct 424  Q
    |||||||||||||| ||||||||||||| ||||||| ||||| || |||| |||| |||| |||| ||||||||||||||| | ||||||||||||||||    
T  24036782 aataaccaaaatatatattctacactcaaaacattgaaatctgatttatttatatacaaatttagatcaaaacaatcaaaact-aaaaaactcaacctct 24036880  T
Q  425 tcatcatca----ggcttgcagatagtttcatcaactta 459  Q
    |||||||||    ||||||||||||||||||||||||||    
T  24036881 tcatcatcaggatggcttgcagatagtttcatcaactta 24036919  T

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Target: chr1; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 335 - 458
Target Start/End: Complemental strand, 39210165 - 39210058
Alignment:
Q  335 aatatgtattctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatcag 434  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||                |||||| |||||||||||||||||||    
T  39210165 aatatatattctacactcacaacattggaatctaatctattcatattcaaattagttc----------------aaaaaaatcaacctcttcatcatcag 39210082  T
Q  435 gcttgcagatagtttcatcaactt 458  Q
    ||||||||||||||||||||||||    
T  39210081 gcttgcagatagtttcatcaactt 39210058  T

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Target: chr1; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 257 - 317
Target Start/End: Original strand, 24036763 - 24036823
Alignment:
Q  257 tataacaaatgattataccaataaccaaaatatatattctacactcacaacattgaaatct 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  24036763 tataacaaatgattataccaataaccaaaatatatattctacactcaaaacattgaaatct 24036823  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 285 - 323
Target Start/End: Complemental strand, 39210165 - 39210127
Alignment:
Q  285 aatatatattctacactcacaacattgaaatctaatcta 323  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  39210165 aatatatattctacactcacaacattggaatctaatcta 39210127  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 581 - 610
Target Start/End: Complemental strand, 39209965 - 39209936
Alignment:
Q  581 acctcttcaccgagctcgatagctctttca 610  Q
    ||||||||||||||||||||||||||||||    
T  39209965 acctcttcaccgagctcgatagctctttca 39209936  T

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Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 345 - 457
Target Start/End: Original strand, 38950770 - 38950885
Alignment:
Q  345 ctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaatt------caaaaaactcaacctcttcatcatcaggctt 438  Q
    ||||||||||||| ||| ||||||||||| ||||||||||||||| |||||||||||||||||       ||||||||||||||||   |||||||||||    
T  38950770 ctacactcacaactttgaaatctaatctaatcatattcaaattaggtcaaaacaatcaaaattaaaaaaaaaaaaactcaacctct---tcatcaggctt 38950866  T
Q  439 gcagatagtttcatcaact 457  Q
    |||||||||||||||||||    
T  38950867 gcagatagtttcatcaact 38950885  T

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Target: chr3 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 364 - 458
Target Start/End: Complemental strand, 9461298 - 9461195
Alignment:
Q  364 atctaatctattcatattcaaattagttcaaaacaatcaaaattca---------aaaaactcaacctcttcatcatcaggcttgcagatagtttcatca 454  Q
    |||||||||| ||||||||||||||| ||||||||||||||||| |         |||||||||||||||||||||||||||||||||||||||||||||    
T  9461298 atctaatctaatcatattcaaattaggtcaaaacaatcaaaattaacaaaaaaaaaaaaactcaacctcttcatcatcaggcttgcagatagtttcatca 9461199  T
Q  455 actt 458  Q
    ||||    
T  9461198 actt 9461195  T

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Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 341 - 407
Target Start/End: Original strand, 18331879 - 18331945
Alignment:
Q  341 tattctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaatt 407  Q
    |||||||||||||||| |||| ||||||||||| ||||||||||||||  |||||||||||||||||    
T  18331879 tattctacactcacaatattgaaatctaatctaatcatattcaaattatgtcaaaacaatcaaaatt 18331945  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 409 - 458
Target Start/End: Original strand, 18331979 - 18332028
Alignment:
Q  409 aaaaaactcaacctcttcatcatcaggcttgcagatagtttcatcaactt 458  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18331979 aaaaaactcaacctcttcatcatcaggcttgtagatagtttcatcaactt 18332028  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 325
Target Start/End: Original strand, 18331878 - 18331913
Alignment:
Q  290 atattctacactcacaacattgaaatctaatctaat 325  Q
    ||||||||||||||||| ||||||||||||||||||    
T  18331878 atattctacactcacaatattgaaatctaatctaat 18331913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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