View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1802_low_20 (Length: 349)
Name: NF1802_low_20
Description: NF1802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1802_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 17 - 332
Target Start/End: Complemental strand, 30500937 - 30500621
Alignment:
| Q |
17 |
aatatagtggataacttttctcatgtaactagtacaaccagtatcattagctccatttcttactttacacattcaaagaaataattgcacattgattggc |
116 |
Q |
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||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
30500937 |
aatatggtggataacttttctcatgtcattagtacaaccagtatcattagctccatttcttactttagacattcaaagaaataattgcacattgattggc |
30500838 |
T |
|
| Q |
117 |
aaccttctcatgataattgttttaagcttagtacagattgctcccaccaaaccgtctatagatcaactac-ttggggtgggttaaccggagactatacat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
30500837 |
aaccttctcatgataattgttttaagcttagtacagattgctcccaccaaaccgtctatagatcaactactttggggtgggttaaccagagactatacat |
30500738 |
T |
|
| Q |
216 |
gttgtttcattaaaggattttattgcaattagaaacttctacgaccatctttgttgagctttgtgatctcaactttggcttgaagcacactaaaagttta |
315 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30500737 |
gttgtttcattaaaagattttattgcaattagaaacttctacgaccatctttgttgagctttgtgatctcaactttggcttgaagcacactaaaagttta |
30500638 |
T |
|
| Q |
316 |
gtttttcatacatctat |
332 |
Q |
| |
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||||||||||||||||| |
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| T |
30500637 |
gtttttcatacatctat |
30500621 |
T |
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