View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1802_low_21 (Length: 333)
Name: NF1802_low_21
Description: NF1802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1802_low_21 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 5726286 - 5726618
Alignment:
| Q |
1 |
ccaacttgtatacttgcttaattgtttattatgagtgtgagataaatgatatatatttaaactaattatttagtttggagttccaatttaaacctgtgca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5726286 |
ccaacttgtatacttgcttaattgtttattatgagtatgagataaatgatatatatttaaactaattatttagtttggagtttcaatttaaacctgtgca |
5726385 |
T |
|
| Q |
101 |
tatgaaaaatatatacccgaatatgtcaatatcataaaatgatatcaattaactcaaaaggaatctct--------------acgagacattatttgttt |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||| || |
|
|
| T |
5726386 |
tatgaaaaatatatacccgaatatgtcaatatcataaaatgatatcaattaactcaaaaggaatctctgcaattgctcgtagatgttacattatttg-tt |
5726484 |
T |
|
| Q |
187 |
gctaaggaaaaactaagaagttaagggtgcaaaaattaactctaaattttatgcttcattatgtcggcatatgttaatatcttaattaaattaaagaaat |
286 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5726485 |
gctaaggaaaaactaagaagttaaggttgcaaaaattaactctaaattttatgcttcattatgtcggcatatgttaatatcttaattaaattaaagaaat |
5726584 |
T |
|
| Q |
287 |
gctttttccagtctactattttctcgcacgtcct |
320 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||| |
|
|
| T |
5726585 |
gcttttttcagtctactattttctcgcacctcct |
5726618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University