View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1802_low_23 (Length: 331)
Name: NF1802_low_23
Description: NF1802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1802_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 25 - 321
Target Start/End: Original strand, 33806008 - 33806304
Alignment:
| Q |
25 |
tgtagggatcacaaggttctggtgtatcacaataatcttgtggtattcttgttgaggaatcaccatttgatccaccaccgttgagattagagaaagtaat |
124 |
Q |
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|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33806008 |
tgtaaggatcacaaggttctggtgtatcacaatgatcttgtggtattcttgttgaggaatcaccatttgatccaccaccgttgagattagagaaaataat |
33806107 |
T |
|
| Q |
125 |
gacaccatcttttcccaaaactgcaagccagcttgcatttatacctgcatcaacagagaaaatgaattgctataacaaagacctattgttatcatagaat |
224 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
33806108 |
gacaccatcttttcccaaaactgcaatccagcttgcatttatacctgcatcaacagagaaaatgaatttccataacaaagacctattgttatcatagaat |
33806207 |
T |
|
| Q |
225 |
ctccaagaattgtccctgatatttgcaaatgccacaacatggccgaccttatcaatgattttacggatatcattctgcatagtccaataagtctgtg |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
33806208 |
ctccaagaattgtccctgatatttgcaaatgccacaacatggccgaccttatcaacgattttacggttatcattctgcatagtccaataagtctgtg |
33806304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 25 - 321
Target Start/End: Complemental strand, 33812296 - 33812000
Alignment:
| Q |
25 |
tgtagggatcacaaggttctggtgtatcacaataatcttgtggtattcttgttgaggaatcaccatttgatccaccaccgttgagattagagaaagtaat |
124 |
Q |
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|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33812296 |
tgtaaggatcacaaggttctggtgtatcacaatgatcttgtggtattcttgttgaggaatcaccatttgatccaccaccgttgagattagagaaaataat |
33812197 |
T |
|
| Q |
125 |
gacaccatcttttcccaaaactgcaagccagcttgcatttatacctgcatcaacagagaaaatgaattgctataacaaagacctattgttatcatagaat |
224 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
33812196 |
gacaccatcttttcccaaaactgcaatccagcttgcatttatacctgcatcaacagagaaaatgaatttccataacaaagacctattgttatcatagaat |
33812097 |
T |
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| Q |
225 |
ctccaagaattgtccctgatatttgcaaatgccacaacatggccgaccttatcaatgattttacggatatcattctgcatagtccaataagtctgtg |
321 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
33812096 |
ctccaagaattgtccctgatatttgcaaatgccacaacatggccgaccttatcaacgattttacggttatcattctgcatagtccaataagtctgtg |
33812000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 25 - 313
Target Start/End: Complemental strand, 31027970 - 31027682
Alignment:
| Q |
25 |
tgtagggatcacaaggttctggtgtatcacaataatcttgtggtattcttgttgaggaatcaccatttgatccaccaccgttgagattagagaaagtaat |
124 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
31027970 |
tgtagggatcacaaggttctggtgtaccacaataatcttgtggtattcttgttgaagaatcaccgtttgatccaccaccgttgagattcgagaaagtaat |
31027871 |
T |
|
| Q |
125 |
gacaccatcttttcccaaaactgcaagccagcttgcatttatacctgcatcaacagagaaaatgaattgctataacaaagacctattgttatcatagaat |
224 |
Q |
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||||||||| ||||||||||||||| ||| ||| ||||||| ||| ||||| ||||||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
31027870 |
gacaccatcccttcccaaaactgcaatccaacttccatttatgcctccatcagcagagaaaatgaattgccataacaaagacttattgttatcatagaac |
31027771 |
T |
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| Q |
225 |
ctccaagaattgtccctgatatttgcaaatgccacaacatggccgaccttatcaatgattttacggatatcattctgcatagtccaata |
313 |
Q |
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|||||||||||||| |||| ||||||||| ||||||||||||||||||||||| || ||||||||| |||| ||||||||||||||||| |
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| T |
31027770 |
ctccaagaattgtcactgagatttgcaaacgccacaacatggccgaccttatctattattttacggttatccttctgcatagtccaata |
31027682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 18 - 321
Target Start/End: Original strand, 33801528 - 33801822
Alignment:
| Q |
18 |
catattctgtagggatcacaaggttctggtgtatcacaataatcttgtggtattcttgttgaggaatcaccatttgatccaccaccgttgagattagaga |
117 |
Q |
| |
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||||||| ||||||||||||||||||||||||| ||||| |||| |||||||||| ||| | ||||| ||||||||| |||||||||||| |||| |
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| T |
33801528 |
catattccgtagggatcacaaggttctggtgtaccacaaggatctcttggtattcttagtgaagcatcactgtttgatccagtaccgttgagattcgaga |
33801627 |
T |
|
| Q |
118 |
aagtaatgacaccatcttttcccaaaactgcaagccagcttgcatttatacctgcatcaacagagaaaatgaattgctataacaaagacctattgttatc |
217 |
Q |
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||||||||||||| |||||||| |||||||||| ||| ||||||| ||| | |||||| |||||||||| ||||||||||| |||||||||| |
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| T |
33801628 |
aagtaatgacaccgtcttttcctaaaactgcaatccaacttgcatgtat---------atcagagacaatgaattgccataacaaagacttattgttatc |
33801718 |
T |
|
| Q |
218 |
atagaatctccaagaattgtccctgatatttgcaaatgccacaacatggccgaccttatcaatgattttacggatatcattctgcatagtccaataagtc |
317 |
Q |
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|||||| ||||||||||| || |||| ||||||||| |||||||||| || ||| | ||| |||||||| |||||||||||||||||||||||||| |
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| T |
33801719 |
atagaacctccaagaattatcactgagatttgcaaaagccacaacatcaccattcttgttaatcgttttacggttatcattctgcatagtccaataagtc |
33801818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 5e-47; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 59 - 314
Target Start/End: Complemental strand, 49462903 - 49462648
Alignment:
| Q |
59 |
atcttgtggtattcttgttgaggaatcaccatttgatccaccaccgttgagattagagaaagtaatgacaccatcttttcccaaaactgcaagccagctt |
158 |
Q |
| |
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|||||||||||| || || || ||||||||||| || ||||||| ||||||||||||||||||||| |||||||| |||||||||| |||| ||| || |
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| T |
49462903 |
atcttgtggtatcctagtcgaagaatcaccattcgacccaccactgttgagattagagaaagtaataacaccatcccttcccaaaacagcaatccaagtt |
49462804 |
T |
|
| Q |
159 |
gcatttatacctgcatcaacagagaaaatgaattgctataacaaagacctattgttatcatagaatctccaagaattgtccctgatatttgcaaatgcca |
258 |
Q |
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||||||| |||| ||||| ||||||||||||||||| | ||||||||| | |||| |||||| ||||||||||||||||| || | ||| || | ||| |
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| T |
49462803 |
gcatttacacctacatcatcagagaaaatgaattgccacaacaaagacttcttgtcatcataaaatctccaagaattgtcactaagattcgccgaaacca |
49462704 |
T |
|
| Q |
259 |
caacatggccgaccttatcaatgattttacggatatcattctgcatagtccaataa |
314 |
Q |
| |
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||||||| || ||||||||||| |||| | | |||| | |||||||||||||||| |
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| T |
49462703 |
caacatgaccatccttatcaatggttttcctgttatcctcctgcatagtccaataa |
49462648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 59 - 251
Target Start/End: Original strand, 10071050 - 10071242
Alignment:
| Q |
59 |
atcttgtggtattcttgttgaggaatcaccatttgatccaccaccgttgagattagagaaagtaatgacaccatcttttcccaaaactgcaagccagctt |
158 |
Q |
| |
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||||||||||||||||||||| ||||||| ||| ||||||| ||||||| ||||||||||||| | |||||| |||| |||||||||| ||| || |
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| T |
10071050 |
atcttgtggtattcttgttgatgaatcactgtttattccaccattgttgagagtagagaaagtaataaaaccatcccttccgaaaactgcaatccaagtt |
10071149 |
T |
|
| Q |
159 |
gcatttatacctgcatcaacagagaaaatgaattgctataacaaagacctattgttatcatagaatctccaagaattgtccctgatatttgca |
251 |
Q |
| |
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|| || | || ||||||| || ||||| | |||||| | ||||||||| | || | ||||| |||||||| |||||| |||||||||||| |
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| T |
10071150 |
gctttcacacatgcatcagcatagaaagtaaattgcaacaacaaagacatcttctcgtcatacaatctccataaattgttactgatatttgca |
10071242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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