View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1802_low_28 (Length: 311)
Name: NF1802_low_28
Description: NF1802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1802_low_28 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 50 - 300
Target Start/End: Complemental strand, 8527707 - 8527453
Alignment:
| Q |
50 |
gagtttcaccattcatattcctaattcgaaattgtcgacatgcttgggaaatacaactccaagaataagacgaataatgaggctgagcagttgtttgata |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8527707 |
gagtttcaccattcatattcctaattcgaaattgtcgacatgcttgggaaatacaactccaagaataagacgaataatgaggctgagcagttgtttgata |
8527608 |
T |
|
| Q |
150 |
t----tagcctgaaaacgaacatgtaggtgggaagagattaaaactagattaaaattaacaaactattccaattttgctctccttccttagctttgttgc |
245 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8527607 |
tatattagcctgaaaacgaacatgtaggtgggaagagattaaaactagattaaaattaacaaactattccaattttgctctccttccttagctttgttgc |
8527508 |
T |
|
| Q |
246 |
ttttacttgatttgagttttcatatgatttaattaatgtagtttctttcattcat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8527507 |
ttttacttgatttgagttttcatatgatttaattaatgtagtttctttcattcat |
8527453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 190 - 277
Target Start/End: Complemental strand, 8627386 - 8627299
Alignment:
| Q |
190 |
ctagattaaaattaacaaactattccaattttgctctccttccttagctttgttgcttttacttgatttgagttttcatatgatttaa |
277 |
Q |
| |
|
||||||| ||| ||| |||||| ||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
8627386 |
ctagattgaaactaaaaaactactccaattatgctctctttccttagctttgttgcttttacttgattggagttttcatataatttaa |
8627299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 200 - 264
Target Start/End: Complemental strand, 8632569 - 8632505
Alignment:
| Q |
200 |
attaacaaactattccaattttgctctccttccttagctttgttgcttttacttgatttgagttt |
264 |
Q |
| |
|
|||||||||||||||||||| |||| |||||| ||| |||||||||||||| ||||| ||||||| |
|
|
| T |
8632569 |
attaacaaactattccaattatgctttccttctttacctttgttgcttttatttgatgtgagttt |
8632505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 49
Target Start/End: Complemental strand, 8527755 - 8527724
Alignment:
| Q |
18 |
aagacgttctataattttaagaacctcgcctc |
49 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
8527755 |
aagacgttctataattttaagaacctcgcctc |
8527724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 278
Target Start/End: Complemental strand, 41439964 - 41439907
Alignment:
| Q |
221 |
tgctctccttccttagctttgttgcttttacttgatttgagttttcatatgatttaat |
278 |
Q |
| |
|
||||||| |||||||||| ||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
41439964 |
tgctctcattccttagctatgttgcttttatctgatttgagttttcatatgatctaat |
41439907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University