View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1802_low_29 (Length: 307)
Name: NF1802_low_29
Description: NF1802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1802_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 139; Significance: 9e-73; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 111 - 290
Target Start/End: Original strand, 4277178 - 4277357
Alignment:
| Q |
111 |
ttgtgcctagttagaatactgatttgtaataaagtagggaaaagtccaacatttgggttaatatggattagcatttatcttatgagagcttttcaatcat |
210 |
Q |
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| T |
4277178 |
ttgtgccttgttagaatactgatttgtaatcaagtagggaaaagtccaacatttgggttaatatggattagcttttatcttatgagagcttttcaatcat |
4277277 |
T |
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| Q |
211 |
attagcttatgatacttaacttacaacttagtccttcaaattaannnnnnnacaattaacataagaaagtttatactttt |
290 |
Q |
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| T |
4277278 |
attagcttatgatacttaacttacaaattagtccttcaaattaatttttttacaattaagataagaaagtttatactttt |
4277357 |
T |
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Target: chr5 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 63 - 160
Target Start/End: Complemental strand, 24091311 - 24091211
Alignment:
| Q |
63 |
cttgagtgttgcagctcattatttggttggaa---gttaataaaaactagtttgtgcctagttagaatactgatttgtaataaagtagggaaaagtccaa |
159 |
Q |
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| T |
24091311 |
cttgagtgttgcagctccttatttggttggaataagttaataaaaacgagcttgtgccttgttagaatactgatttgtgatcaagtaaggaaaagtccaa |
24091212 |
T |
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| Q |
160 |
c |
160 |
Q |
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| T |
24091211 |
c |
24091211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 162 - 237
Target Start/End: Complemental strand, 24091006 - 24090931
Alignment:
| Q |
162 |
tttgggttaatatggattagcatttatcttatgagagcttttcaatcatattagcttatgatacttaacttacaac |
237 |
Q |
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||||||||| |||||||||| | ||||| |||||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
24091006 |
tttgggttatcatggattagcctatatctgatgagagcttttcaatcaaattagcttatgttacttaacttacaac |
24090931 |
T |
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