View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1802_low_32 (Length: 298)
Name: NF1802_low_32
Description: NF1802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1802_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 15 - 283
Target Start/End: Original strand, 13887652 - 13887920
Alignment:
| Q |
15 |
ttcttcagttgctttaagctggtttttctggttacttaatcagaatcatgaagttgaggagaaaatattagaagagatttgcagggttgtgagtcaaagg |
114 |
Q |
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| T |
13887652 |
ttcttcagttgctttaagctggtttttctggttacttaatcagaatcatgaagtggaggagaaaatattagaagagatttgcagggttgtgagtcaaagg |
13887751 |
T |
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| Q |
115 |
gaggatattaatattaataaggaagtgtttaatgattctttaagattcaaacctgaggagattaagaagatggattatttgcatgctgctctttcagaaa |
214 |
Q |
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| T |
13887752 |
gaggatattaatattaataaggaagtgtttaatgattctttaagattcaaacctgaggagattaagaagatgggttatttgcatgctgctctttcagaaa |
13887851 |
T |
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| Q |
215 |
ctcttagattgtatccttctgttcctatggatcataaagaggtaataaaagtttaattttagctatttg |
283 |
Q |
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| T |
13887852 |
ctcttagattgtatccttctgttcctatggatcataaagaggtaataaaagtttaattttagctatttg |
13887920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 15 - 282
Target Start/End: Complemental strand, 13897558 - 13897297
Alignment:
| Q |
15 |
ttcttcagttgctttaagctggtttttctggttacttaatcagaatcatgaagttgaggagaaaatattagaagagatttgcagggttgtgagtcaaagg |
114 |
Q |
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| T |
13897558 |
ttcttcagttgctttaagctggtttttctggttggttgatcagaatcatgaagttgaggagaaaatattagaagagatttgcagggttgtgtgtcaaagg |
13897459 |
T |
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| Q |
115 |
gaggatattaatattaataaggaagtgtttaatgattctttaagattcaaacctgaggagattaagaagatggattatttgcatgctgctctttcagaaa |
214 |
Q |
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| T |
13897458 |
gaggatattaata------aggaagtgtttaatgattctttgagattcaagcctgaggagattaagaagatggattatttgcatgcagctctttcagaag |
13897365 |
T |
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| Q |
215 |
ctcttagattgtatccttctgttcctatggatcataaagaggtaataaaagtttaattttagctattt |
282 |
Q |
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| T |
13897364 |
ctcttagattatatccttctgttcctgtggattgtaaggaggtaataactgttcaattttagatattt |
13897297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 118
Target Start/End: Complemental strand, 7295589 - 7295489
Alignment:
| Q |
15 |
ttcttcagttgctttaagctggtttttctggttacttaatcagaatcatgaagttgaggagaaaatattagaagagatttgcagggttgtgagtcaaagg |
114 |
Q |
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| T |
7295589 |
ttctttagttgctttgaggcggcttttctggttgcttgatcataataatgaaatggaggaaaaaatagtaga---gatttgcagggtggtgagtcaaagg |
7295493 |
T |
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| Q |
115 |
gagg |
118 |
Q |
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|||| |
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| T |
7295492 |
gagg |
7295489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 9e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 170 - 260
Target Start/End: Complemental strand, 1034478 - 1034388
Alignment:
| Q |
170 |
aggagattaagaagatggattatttgcatgctgctctttcagaaactcttagattgtatccttctgttcctatggatcataaagaggtaat |
260 |
Q |
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| T |
1034478 |
aggagattaagaagatggattatttgcatgctgctctttcagaagctcttagattgtacccttctgtgcctgtggatcgtaaggaggtaat |
1034388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 15 - 101
Target Start/End: Complemental strand, 1034615 - 1034529
Alignment:
| Q |
15 |
ttcttcagttgctttaagctggtttttctggttacttaatcagaatcatgaagttgaggagaaaatattagaagagatttgcagggt |
101 |
Q |
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| T |
1034615 |
ttcttcagttgctttgagctggtttttctggttggttgatcagaatcatgaagttgaggagaaaatattagaagaaatttgcagggt |
1034529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 260
Target Start/End: Complemental strand, 28666895 - 28666656
Alignment:
| Q |
15 |
ttcttcagttgctttaagctggtttttctggttacttaatcagaatcatgaagttgaggagaaaatattagaagagatttgcagggttgtgagtcaaagg |
114 |
Q |
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| T |
28666895 |
ttcttctgtggctttgagttggtttttttggttacttgatcagaatcatgaagtggaggagaagatattagaagagatatgcaaggtggtgagtcagag- |
28666797 |
T |
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| Q |
115 |
gaggatattaatattaataaggaagtgtttaatgattctttaagattcaaacctgaggagattaagaagatggattatttgcatgctgctctttcagaaa |
214 |
Q |
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| T |
28666796 |
-----aaatgatataaagaaggaagaatttgaaaattctttgatatttaggcctgaagagataaaaaagatggactatttgcatgcttgtttatctgaaa |
28666702 |
T |
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| Q |
215 |
ctcttagattgtatccttctgttcctatggatcataaagaggtaat |
260 |
Q |
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| T |
28666701 |
ctctcagattatatccttctgttcctgttgatcacaaggaggtaat |
28666656 |
T |
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