View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1802_low_33 (Length: 291)
Name: NF1802_low_33
Description: NF1802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1802_low_33 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 2758096 - 2758386
Alignment:
| Q |
1 |
tcataatcctccggtaaatgccaagcatattgataataagccgtgaaaggatcgaaaagaacaggaatacatcccgatattagtgaatcaaacaccgatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2758096 |
tcataatcctccggtaaatgccaagcatattgataataagccgtgaaaggatcgaaaagaacaggaatacatcccgatattagtgaatcaaacaccgatt |
2758195 |
T |
|
| Q |
101 |
ttctcgttggactatctcccggtggctgcaagcaaaactcagattccacaaaaagttctataattgattctggctcattacatttagcagaactacaatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2758196 |
ttctcgttggactatctcccggtggctgcaagcaaaactcagattccacaaaaagttctataattgattctggctcattacatttagcagaactacaatt |
2758295 |
T |
|
| Q |
201 |
cagaaacttgcatttaccgtcacttttggaactgcattggtcgattaatatcgaccttatgtgatcatccgcatgatcccgcgccgcgcct |
291 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2758296 |
cagaaacttgcatttaccgtcactttcggaactgcattggttgattaatatcgaccttatgtgatcatccgcatgatcccgcgctgcgcct |
2758386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 5 - 287
Target Start/End: Original strand, 2754139 - 2754421
Alignment:
| Q |
5 |
aatcctccggtaaatgccaagcatattgataataagccgtgaaaggatcgaaaagaacaggaatacatcccgatattagtgaatcaaacaccgattttct |
104 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||| ||||||||||| |
|
|
| T |
2754139 |
aatcctctggtaaatgccaagcatattgataataagccgtgaaaggatcgaaaagaaccggaatacatcccgatatcagcgaatcaaaaaccgattttct |
2754238 |
T |
|
| Q |
105 |
cgttggactatctcccggtggctgcaagcaaaactcagattccacaaaaagttctataattgattctggctcattacatttagcagaactacaattcaga |
204 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||| |||||||||||||| |||||||||||||||||| ||||||| ||||||||||||| ||| |
|
|
| T |
2754239 |
cgttggactatctcccggtggctgtaaacaaaactcagactccacaaaaagttccataattgattctggctcagaacatttaacagaactacaatttaga |
2754338 |
T |
|
| Q |
205 |
aacttgcatttaccgtcacttttggaactgcattggtcgattaatatcgaccttatgtgatcatccgcatgatcccgcgccgc |
287 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||| ||| |||||||||||||| || |||||||||| ||||| |||||| |
|
|
| T |
2754339 |
aacttgcatttaccttcacttttcgaactgcattggttgatcaatatcgaccttatatggtcatccgcatcatccctcgccgc |
2754421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University