View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1802_low_34 (Length: 272)
Name: NF1802_low_34
Description: NF1802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1802_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 38048582 - 38048451
Alignment:
| Q |
1 |
ttatttcacaagagataaatatgaattcaacgtgcatgacatatatttaactattttattaatcgtg------------tataaaataatattataacat |
88 |
Q |
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| T |
38048582 |
ttatttcccaagagataaatatgaattcaacgtgcatgacatataattaactattttattaatcgtgtatgtactattttataaaataatattataacat |
38048483 |
T |
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| Q |
89 |
atttacatggtcgaatcacattgaatgctttg |
120 |
Q |
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| T |
38048482 |
atttaaatggtcgaatcacattgaatgctttg |
38048451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 199 - 264
Target Start/End: Complemental strand, 38048373 - 38048310
Alignment:
| Q |
199 |
gtatgttttctagttcgctttattttcttatctatatatatagtatatgtgatccatagtattatc |
264 |
Q |
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| T |
38048373 |
gtatgttttctagttcgctttattttcttatctata--tatagtatatgcgatccatagtattatc |
38048310 |
T |
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