View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1802_low_37 (Length: 268)

Name: NF1802_low_37
Description: NF1802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1802_low_37
NF1802_low_37
[»] chr5 (4 HSPs)
chr5 (1-249)||(9197903-9198152)
chr5 (8-134)||(26449066-26449190)
chr5 (20-111)||(32528994-32529083)
chr5 (73-128)||(3522516-3522571)
[»] chr1 (3 HSPs)
chr1 (8-128)||(42471282-42471404)
chr1 (72-127)||(44108879-44108934)
chr1 (20-111)||(5715034-5715123)
[»] chr8 (2 HSPs)
chr8 (2-149)||(33304060-33304205)
chr8 (8-128)||(32897613-32897731)
[»] chr2 (3 HSPs)
chr2 (31-132)||(40626995-40627094)
chr2 (30-134)||(19427141-19427243)
chr2 (72-130)||(29463222-29463280)
[»] scaffold0377 (1 HSPs)
scaffold0377 (72-134)||(11929-11991)
[»] chr7 (2 HSPs)
chr7 (72-134)||(42078130-42078192)
chr7 (72-134)||(37970443-37970505)
[»] chr4 (3 HSPs)
chr4 (72-134)||(14518556-14518618)
chr4 (1-51)||(26634583-26634632)
chr4 (72-133)||(171929-171990)
[»] chr3 (3 HSPs)
chr3 (20-129)||(40417621-40417727)
chr3 (72-127)||(20525556-20525611)
chr3 (25-100)||(48935746-48935819)
[»] chr6 (1 HSPs)
chr6 (40-115)||(31799395-31799468)


Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 9198152 - 9197903
Alignment:
Q  1 tgataaaattagaaaatgaataaagataggatatgatagggataagatagacacttatcatgtcataagtttttggtgcacacatgataacaaagatgat 100  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||    
T  9198152 tgataagattaaaaaatgaataaagataggatatgatagggataagatagacacttatcatgtcatacgttcttggtgcacacatgataaaaaagatgat 9198053  T
Q  101 aatattattttatcatattatgtgtttgatgcacgtgttattaacatgaagg-ggnnnnnnnnttaacaacgctggggcatattcatctccaccatttgc 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||| |||||||||||||||||||||||||||    
T  9198052 aatattattttatcatattatgtgtttgatgcacgtgttattaacatgaaggaaaaaaagaaattaacaacgttggggcatattcatctccaccatttgc 9197953  T
Q  200 ccccttcgtcattccatcaaccagattcattgtctttgaacaccgccatc 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9197952 ccccttcgtcattccatcaaccagattcattgtctttgaacaccgccatc 9197903  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 8 - 134
Target Start/End: Complemental strand, 26449190 - 26449066
Alignment:
Q  8 attagaaaatgaataaagataggatatgatagggataagatagacacttatcatgtcataagtttttggtgcacacatgataacaaagatgataatatta 107  Q
    ||||||||||| ||||| ||| |||||||||| || | |||||||||||||| | ||||  | |||||||||||| ||||||| ||||||||||  ||||    
T  26449190 attagaaaatggataaaaatatgatatgatagtgacatgatagacacttatcctatcat--gcttttggtgcacatatgataagaaagatgatatcatta 26449093  T
Q  108 ttttatcatattatgtgtttgatgcac 134  Q
    ||||||| ||| ||||||||| |||||    
T  26449092 ttttatcctatcatgtgtttgttgcac 26449066  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 32528994 - 32529083
Alignment:
Q  20 ataaagataggatatgatagggataagatagacacttatcatgtcataagtttttggtgcacacatgataacaaagatgataatattatttt 111  Q
    |||||||||||||||||||  |||| |||||||||||||  | ||||  || ||||||||| | ||||||||||| |||||| |||||||||    
T  32528994 ataaagataggatatgatactgatatgatagacacttattctatcat--gtgtttggtgcatagatgataacaaatatgatagtattatttt 32529083  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 128
Target Start/End: Original strand, 3522516 - 3522571
Alignment:
Q  73 ttggtgcacacatgataacaaagatgataatattattttatcatattatgtgtttg 128  Q
    ||||||||| |||||||| ||||||||||| ||||||||||| |||  ||||||||    
T  3522516 ttggtgcacgcatgataaaaaagatgataacattattttatcctatcgtgtgtttg 3522571  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 128
Target Start/End: Original strand, 42471282 - 42471404
Alignment:
Q  8 attagaaaatgaataaagataggatatgatagggataagatagacacttatcatgtcataagtttttggtgcacacatgataacaaagatgataatatta 107  Q
    ||||||||||  ||||||||| |||||||||  |||| |||||||| ||||||| ||||  || ||||||||||||||||||| ||| ||||||  ||||    
T  42471282 attagaaaatagataaagatatgatatgataatgatatgatagacatttatcatatcat--gtgtttggtgcacacatgataagaaatatgatagcatta 42471379  T
Q  108 ttt----tatcatattatgtgtttg 128  Q
    |||    |||||||| |||||||||    
T  42471380 tttatcatatcatatcatgtgtttg 42471404  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 127
Target Start/End: Complemental strand, 44108934 - 44108879
Alignment:
Q  72 tttggtgcacacatgataacaaagatgataatattattttatcatattatgtgttt 127  Q
    ||||| ||||||||||||| ||| ||||||  ||||||||||||||||||||||||    
T  44108934 tttggggcacacatgataataaacatgatagcattattttatcatattatgtgttt 44108879  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 5715034 - 5715123
Alignment:
Q  20 ataaagataggatatgatagggataagatagacacttatcatgtcataagtttttggtgcacacatgataacaaagatgataatattatttt 111  Q
    ||||||||  || ||||||| | ||||||||| | ||||||| ||||| ||||  ||||||| |||||||| ||| || |||||||||||||    
T  5715034 ataaagatgagacatgatagtggtaagatagatatttatcatatcatatgttt--ggtgcacgcatgataataaatattataatattatttt 5715123  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 149
Target Start/End: Original strand, 33304060 - 33304205
Alignment:
Q  2 gataaaattagaaaatgaataaagataggatatgatagggataagatagacacttatcatgtcataagtttttggtgcacacatgataacaaagatgata 101  Q
    ||||| ||||||||||| |||||||||| ||||||| | |||  |||||||| |||| || | ||  || |||| || ||||||||||| ||||||||||    
T  33304060 gataagattagaaaatggataaagatag-atatgatcgtgatg-gatagacatttattatattat--gtgtttgatgtacacatgataagaaagatgata 33304155  T
Q  102 atattattttatcatattatgtgtttgatg--cacgtgttattaacatga 149  Q
    ||||| ||||||| |||||| | |||||||  ||| ||||||||||||||    
T  33304156 atattgttttatcttattatatatttgatgcacacttgttattaacatga 33304205  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 128
Target Start/End: Complemental strand, 32897731 - 32897613
Alignment:
Q  8 attagaaaatgaataaagataggatatgatagggataagatagacacttatcatgtcataagtttttggtgcacacatgataacaaagatgataatatta 107  Q
    ||||||||||| || |||||| |||| ||||| || | |||||||| ||||| | ||||| |  ||||||||| | ||||||| ||||| ||||| |||     
T  32897731 attagaaaatggatcaagatatgataggatagtgacatgatagacatttatcctatcatacg--tttggtgcagatatgataagaaagaggataacattt 32897634  T
Q  108 ttttatcatattatgtgtttg 128  Q
    ||||||| ||| || ||||||    
T  32897633 ttttatcctatcatatgtttg 32897613  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 132
Target Start/End: Complemental strand, 40627094 - 40626995
Alignment:
Q  31 atatgatagggataagatagacacttatcatgtcataagtttttggtgcacacatgataacaaagatgataatattattttatcatattatgtgtttgat 130  Q
    |||||||||  | |||||||||||||||||| ||||  || |||||| |||||||||||| || || |||| | ||||||||| |||| |||||||||||    
T  40627094 atatgatagtaacaagatagacacttatcatttcat--gtgtttggtacacacatgataagaaggaggatattcttattttattatatcatgtgtttgat 40626997  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 134
Target Start/End: Complemental strand, 19427243 - 19427141
Alignment:
Q  30 gatatgatagggataagatagacacttatcatgtcataagtttttggtgcacacatgataacaaagatgataatattattttatcatattatgtgtttga 129  Q
    ||||| |||| |||||||||||||  |||| ||||||| |  ||||||||| | ||||||| ||| ||||||  ||||| |||||||||| ||||||||     
T  19427243 gatatcatagtgataagatagacatctatcgtgtcatacg--tttggtgcatatatgataataaatatgatagcattatgttatcatattttgtgtttgg 19427146  T
Q  130 tgcac 134  Q
    |||||    
T  19427145 tgcac 19427141  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 130
Target Start/End: Complemental strand, 29463280 - 29463222
Alignment:
Q  72 tttggtgcacacatgataacaaagatgataatattattttatcatattatgtgtttgat 130  Q
    ||||||| ||| ||||||| ||||||||||  ||||||||||||||| || ||||||||    
T  29463280 tttggtgtacatatgataagaaagatgatagcattattttatcatatcatatgtttgat 29463222  T

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Target: scaffold0377 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0377
Description:

Target: scaffold0377; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 11991 - 11929
Alignment:
Q  72 tttggtgcacacatgataacaaagatgataatattattttatcatattatgtgtttgatgcac 134  Q
    |||||||||| |||||||  ||| ||||||| ||||||||||||||| |||| ||||||||||    
T  11991 tttggtgcacgcatgataggaaatatgataacattattttatcatatcatgtttttgatgcac 11929  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 42078192 - 42078130
Alignment:
Q  72 tttggtgcacacatgataacaaagatgataatattattttatcatattatgtgtttgatgcac 134  Q
    |||||||||| |||||||| ||| ||||||| ||||||||||||||| || | ||||||||||    
T  42078192 tttggtgcacgcatgataagaaatatgataacattattttatcatatcatatttttgatgcac 42078130  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 37970505 - 37970443
Alignment:
Q  72 tttggtgcacacatgataacaaagatgataatattattttatcatattatgtgtttgatgcac 134  Q
    |||||||||||| |||||| ||||||||||  ||||||||||| ||| ||| ||||| |||||    
T  37970505 tttggtgcacacttgataaaaaagatgatagcattattttatcctatcatgcgtttggtgcac 37970443  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 14518618 - 14518556
Alignment:
Q  72 tttggtgcacacatgataacaaagatgataatattattttatcatattatgtgtttgatgcac 134  Q
    |||| ||| |||| ||||| ||||||||||||||||||||||||||| || |||||| |||||    
T  14518618 tttgatgcgcacaagataagaaagatgataatattattttatcatatcatatgtttggtgcac 14518556  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 26634583 - 26634632
Alignment:
Q  1 tgataaaattagaaaatgaataaagataggatatgatagggataagataga 51  Q
    ||||| |||||||||||| ||||||||| |||||||||| |||||||||||    
T  26634583 tgatagaattagaaaatggataaagata-gatatgatagtgataagataga 26634632  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 133
Target Start/End: Original strand, 171929 - 171990
Alignment:
Q  72 tttggtgcacacatgataacaaagatgataatattattttatcatattatgtgtttgatgca 133  Q
    |||| |||||||| ||||||||| || || ||||||||||||||||| |||| ||| |||||    
T  171929 tttgatgcacacaagataacaaatattatcatattattttatcatatcatgtattttatgca 171990  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 129
Target Start/End: Complemental strand, 40417727 - 40417621
Alignment:
Q  20 ataaagataggatatgatagggataagatagacacttatcatgtcataagtttttggtgcacacatgataacaaagatgataatattattttatcatatt 119  Q
    |||| |||||||||||| || || | |||| ||| ||||||| ||||| ||||  ||||||| |||||||| ||| ||||||  |||||||||||||||     
T  40417727 ataaggataggatatgacagtgacatgata-acatttatcatatcatatgttt--ggtgcacgcatgataagaaatatgatagcattattttatcatatc 40417631  T
Q  120 atgtgtttga 129  Q
    ||||||||||    
T  40417630 atgtgtttga 40417621  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 127
Target Start/End: Complemental strand, 20525611 - 20525556
Alignment:
Q  72 tttggtgcacacatgataacaaagatgataatattattttatcatattatgtgttt 127  Q
    ||||||||| | ||||||| |||||||||| |||||||||||||||| || |||||    
T  20525611 tttggtgcagatatgataagaaagatgatattattattttatcatatcatatgttt 20525556  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 100
Target Start/End: Original strand, 48935746 - 48935819
Alignment:
Q  25 gataggatatgatagggataagatagacacttatcatgtcataagtttttggtgcacacatgataacaaagatgat 100  Q
    ||||||||| ||||| || | |||||||||||||| | ||||  || ||||||| ||||||||||| |||||||||    
T  48935746 gataggataggatagtgacatgatagacacttatcctatcat--gtgtttggtgtacacatgataagaaagatgat 48935819  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 115
Target Start/End: Original strand, 31799395 - 31799468
Alignment:
Q  40 ggataagatagacacttatcatgtcataagtttttggtgcacacatgataacaaagatgataatattattttatca 115  Q
    ||||| |||||||||||||||| ||||| |||||   |||||| ||||||| ||| |||||| |||||||||||||    
T  31799395 ggataggatagacacttatcatatcatatgtttta--tgcacatatgataagaaatatgatagtattattttatca 31799468  T

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