View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1802_low_4 (Length: 622)

Name: NF1802_low_4
Description: NF1802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1802_low_4
NF1802_low_4
[»] chr3 (15 HSPs)
chr3 (109-610)||(26215162-26215665)
chr3 (114-367)||(35870227-35870478)
chr3 (175-367)||(48266209-48266399)
chr3 (382-606)||(35870465-35870694)
chr3 (382-610)||(48266386-48266617)
chr3 (231-367)||(52349726-52349861)
chr3 (382-610)||(52349848-52350089)
chr3 (552-604)||(5884254-5884306)
chr3 (109-173)||(26297662-26297725)
chr3 (552-604)||(54945608-54945660)
chr3 (109-152)||(346614-346657)
chr3 (388-442)||(54945722-54945776)
chr3 (109-154)||(5885643-5885688)
chr3 (109-154)||(10176721-10176766)
chr3 (109-153)||(3744470-3744514)
[»] chr4 (25 HSPs)
chr4 (114-367)||(5430592-5430848)
chr4 (382-608)||(5430835-5431061)
chr4 (109-367)||(34737806-34738062)
chr4 (114-367)||(53830512-53830767)
chr4 (109-367)||(21802775-21803031)
chr4 (109-367)||(21632776-21633033)
chr4 (382-610)||(34737583-34737819)
chr4 (382-606)||(53830294-53830525)
chr4 (382-610)||(46092425-46092662)
chr4 (389-610)||(2500431-2500657)
chr4 (231-367)||(2505008-2505143)
chr4 (179-367)||(2500651-2500838)
chr4 (382-610)||(2504780-2505021)
chr4 (385-610)||(21632562-21632786)
chr4 (241-367)||(46092312-46092438)
chr4 (241-367)||(46134837-46134963)
chr4 (382-499)||(46134950-46135071)
chr4 (385-606)||(21803021-21803242)
chr4 (199-367)||(20036251-20036418)
chr4 (109-201)||(26382346-26382438)
chr4 (386-444)||(20036409-20036467)
chr4 (539-602)||(20036522-20036587)
chr4 (115-153)||(27256664-27256702)
chr4 (109-163)||(43942134-43942188)
chr4 (405-442)||(43943567-43943604)
[»] chr8 (16 HSPs)
chr8 (111-367)||(20171837-20172093)
chr8 (382-610)||(11427934-11428162)
chr8 (109-307)||(11428184-11428382)
chr8 (382-604)||(20172080-20172303)
chr8 (111-367)||(8150498-8150752)
chr8 (109-367)||(10186233-10186489)
chr8 (109-367)||(4138196-4138459)
chr8 (385-610)||(10186479-10186705)
chr8 (439-610)||(918775-918945)
chr8 (385-610)||(4138449-4138668)
chr8 (312-367)||(918962-919017)
chr8 (382-444)||(8150449-8150511)
chr8 (109-163)||(32663985-32664039)
chr8 (332-367)||(11428149-11428184)
chr8 (109-149)||(9083151-9083191)
chr8 (109-149)||(31686162-31686202)
[»] chr7 (16 HSPs)
chr7 (111-367)||(44393547-44393803)
chr7 (114-367)||(47233829-47234079)
chr7 (382-604)||(44393790-44394014)
chr7 (231-367)||(25419582-25419717)
chr7 (231-367)||(39066877-39067012)
chr7 (231-367)||(5768071-5768206)
chr7 (382-610)||(47233607-47233842)
chr7 (382-610)||(25419354-25419595)
chr7 (382-499)||(5767963-5768084)
chr7 (19-82)||(44699733-44699796)
chr7 (552-604)||(47932806-47932858)
chr7 (382-444)||(39066825-39066890)
chr7 (388-442)||(47932920-47932974)
chr7 (109-153)||(17026576-17026620)
chr7 (109-153)||(39073319-39073363)
chr7 (114-154)||(47140378-47140418)
[»] scaffold0516 (2 HSPs)
scaffold0516 (111-367)||(3127-3382)
scaffold0516 (382-599)||(3369-3572)
[»] chr2 (16 HSPs)
chr2 (109-367)||(41646715-41646969)
chr2 (382-610)||(41646492-41646728)
chr2 (231-367)||(7574098-7574233)
chr2 (231-367)||(16668693-16668828)
chr2 (382-610)||(7573870-7574111)
chr2 (382-610)||(16668465-16668706)
chr2 (439-606)||(43564311-43564478)
chr2 (312-367)||(43564239-43564294)
chr2 (312-367)||(29455449-29455504)
chr2 (511-587)||(29455575-29455653)
chr2 (439-478)||(29455521-29455560)
chr2 (111-153)||(29455086-29455128)
chr2 (109-154)||(37904093-37904138)
chr2 (109-149)||(6414355-6414395)
chr2 (109-153)||(22990028-22990072)
chr2 (114-154)||(29752926-29752966)
[»] chr5 (9 HSPs)
chr5 (109-367)||(37301995-37302251)
chr5 (114-367)||(21605074-21605324)
chr5 (382-610)||(21604856-21605087)
chr5 (382-610)||(36991165-36991404)
chr5 (231-367)||(36991043-36991178)
chr5 (453-610)||(37301690-37301852)
chr5 (382-460)||(37301929-37302008)
chr5 (109-201)||(11386777-11386869)
chr5 (109-163)||(10180445-10180499)
[»] chr1 (12 HSPs)
chr1 (119-367)||(23726032-23726278)
chr1 (166-367)||(22912535-22912735)
chr1 (231-367)||(13786229-13786364)
chr1 (231-367)||(25807779-25807914)
chr1 (382-587)||(22912341-22912548)
chr1 (382-610)||(13786351-13786592)
chr1 (382-610)||(25807550-25807792)
chr1 (382-599)||(23725842-23726045)
chr1 (453-587)||(39623649-39623783)
chr1 (109-153)||(39621652-39621696)
chr1 (166-204)||(23727848-23727886)
chr1 (109-150)||(29679055-29679096)
[»] chr6 (9 HSPs)
chr6 (382-605)||(16711903-16712129)
chr6 (231-367)||(13433460-13433595)
chr6 (382-610)||(13433232-13433473)
chr6 (453-610)||(18882820-18882976)
chr6 (328-367)||(16712116-16712155)
chr6 (552-604)||(16857407-16857459)
chr6 (114-163)||(16855932-16855981)
chr6 (552-604)||(10810392-10810444)
chr6 (453-497)||(26721029-26721073)
[»] scaffold0061 (1 HSPs)
scaffold0061 (110-173)||(46366-46427)
[»] scaffold0017 (1 HSPs)
scaffold0017 (110-173)||(152360-152421)
[»] scaffold0182 (1 HSPs)
scaffold0182 (552-603)||(8705-8756)
[»] scaffold0316 (1 HSPs)
scaffold0316 (109-163)||(5484-5538)


Alignment Details
Target: chr3 (Bit Score: 405; Significance: 0; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 109 - 610
Target Start/End: Original strand, 26215162 - 26215665
Alignment:
Q  109 acatgtattctaaactacattttacttatgtgtcacttcaccaatgtttcccttttgtaactaatctctcatacttatgccatgtggctctcttttgttc 208  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26215162 acatgtattctaaactacattttacttatgtgttacttcaccaatgtttcccttttgtaactaatctctcatacttatgccatgtggctctcttttgttc 26215261  T
Q  209 ttgattctttactagccattccttactatctaatctttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaatgaat 308  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26215262 ttgattctttgctagccattccttactatctaatctttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaatgaat 26215361  T
Q  309 gtgttataatccattttattaatagtgaggggttacattttaaaattattcatattcttcttc-nnnnnnnnntttattcatattcttagtcaatcatct 407  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||    
T  26215362 gtgttataatccattttattaatagcgaggggttacattttaaaattattcatattcttcttcaaaaaaaaaaattattcatattcttagtcaatcatct 26215461  T
Q  408 tacacacaaaagtttactataaagctcctcattttttctaagctcatatatatgttgcttatgttatccttctcatttcttcttccatttca-nnnnnnn 506  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  26215462 tacacacacaagtttactataaagctcctcattttttctaagctcatatatatgttgcttatgttatccttctcatttcttcttccatttcatttttttt 26215561  T
Q  507 natggttttgattctctcttcaagcttcgtgagtgtgtgtttctatctataattttttgtattctctaatggatattttttctttcatttcacatacaca 606  Q
     || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  26215562 tatagttttgattctctcttcaagcttcgtgagtgtgtgtttctatctataatttttcgtattctctaatggatattttttctttcatttcacaaacaca 26215661  T
Q  607 ggtt 610  Q
    ||||    
T  26215662 ggtt 26215665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 114 - 367
Target Start/End: Original strand, 35870227 - 35870478
Alignment:
Q  114 tattctaaactacattttacttatgtgtcacttcaccaatgtttcccttttgtaactaatctctcatacttatgccatgtggctctcttttgttcttgat 213  Q
    |||||||| |||||||||   |||||||||| | |||||||   ||||||  |||||||||||||||||||||||||||||||| |||||| ||||||||    
T  35870227 tattctaagctacattttttctatgtgtcaccttaccaatgcccccctttc-taactaatctctcatacttatgccatgtggctatcttttcttcttgat 35870325  T
Q  214 tctttactagccattccttactatctaatctttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaatgaatgtgtt 313  Q
    |||||||||| |||||||||||||||| ||||||||||||||||| |||  ||||||||||||||||||||||||||| |||||||||||||||||  ||    
T  35870326 tctttactagtcattccttactatcta-tctttcattttccatcagttgcgaaaactctccatttacttcacttcatgcaagttacacaatgaatgcatt 35870424  T
Q  314 ataatccattttattaatagtgaggggttacattttaaaattattcatattctt 367  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  35870425 ataatccattttattaatattgagaggttacattttaaaattattcatattctt 35870478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 175 - 367
Target Start/End: Original strand, 48266209 - 48266399
Alignment:
Q  175 tctcatacttatgccatgtggctctcttttgttcttgattctttactagccattccttactatctaatctttcattttccatcaattggaaaaactctcc 274  Q
    ||||||||||||| ||||||||| |||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||| |||||||||||    
T  48266209 tctcatacttatgtcatgtggctatcttttcttcttgattctttactagtcattccttactatcta-tctttcattttccatcagttgcaaaaactctcc 48266307  T
Q  275 atttacttcacttcatggaagttacacaatgaatgtgttataatccattttattaatagtgaggggttacattttaaaattattcatattctt 367  Q
    |||||||| |||||||| |||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  48266308 atttactt-acttcatgcaagttacacaatgaatgcattataatccattttattaatattgaggggttacattttaaaattattcatattctt 48266399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 382 - 606
Target Start/End: Original strand, 35870465 - 35870694
Alignment:
Q  382 ttattcatattcttagtcaatcatcttacacacaaaagttta---ctataaagctcctcatttttt-ctaagctcatatatatgttgcttatgttatcct 477  Q
    ||||||||||||||| |||||| ||||||||||| |||||||   |||||||| |||||||||||| |||| || |||||||||||||||||||||||||    
T  35870465 ttattcatattcttaatcaatcctcttacacacacaagtttattactataaaggtcctcatttttttctaaacttatatatatgttgcttatgttatcct 35870564  T
Q  478 tctcatttcttcttccatttcannnnnnnnatggttttgattctctcttcaagcttcgtgagtgtgtgtttcta--tctataattttttgtattctctaa 575  Q
    | ||||||||||||||||||||        || ||||||||| ||||||||||||| ||| |||| ||||||||  |||||||||||| |||||||||||    
T  35870565 tttcatttcttcttccatttca-ttttttgatagttttgattttctcttcaagctttgtgtgtgtatgtttctatttctataatttttcgtattctctaa 35870663  T
Q  576 tggatattttttctttcatttcacatacaca 606  Q
    |||||||||||||||| |||||| |||||||    
T  35870664 tggatattttttctttgatttcaaatacaca 35870694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 382 - 610
Target Start/End: Original strand, 48266386 - 48266617
Alignment:
Q  382 ttattcatattcttagtcaatcatcttacacacaaaagttta---ctataaagctcctcatttt-ttctaagctcatatatatgttgcttatgttatcct 477  Q
    ||||||||||||||| |||||| ||||||||||| |||||||   ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  48266386 ttattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcatttttttctaagcttatatatatgttgcttatgttatcct 48266485  T
Q  478 tctcatttcttcttccatttcannnnnnnnatggttttgattctctcttcaagcttcgtgagtgtgtgtttctatctataattttttgtattctctaatg 577  Q
      |||||||||||||||||| |        || ||||||||| ||||||||||||| ||| |||||| | | | ||||||||||||  ||||||||||||    
T  48266486 cttcatttcttcttccatttta-ttttttgatagttttgattttctcttcaagctttgtgtgtgtgtttctatttctataatttttcatattctctaatg 48266584  T
Q  578 gatattttttctttcatttcacatacacaggtt 610  Q
    |||||||||||||| |||||| |||||||||||    
T  48266585 gatattttttctttgatttcaaatacacaggtt 48266617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 231 - 367
Target Start/End: Original strand, 52349726 - 52349861
Alignment:
Q  231 ttactatctaatctttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaatgaatgtgttataatccattttattaa 330  Q
    |||||||||| ||||||||||||||||| ||  |||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||    
T  52349726 ttactatcta-tctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaa 52349824  T
Q  331 tagtgaggggttacattttaaaattattcatattctt 367  Q
    || ||||||||||||||||||||||||| ||||||||    
T  52349825 tattgaggggttacattttaaaattatttatattctt 52349861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 382 - 610
Target Start/End: Original strand, 52349848 - 52350089
Alignment:
Q  382 ttattcatattcttagtcaatcatcttacacacaaaagttta---ctataaagctcctcatttt-ttctaagctcatatatatgttgcttatgttatcct 477  Q
    ||||| ||||||||| |||||| ||||||||||| || ||||   ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  52349848 ttatttatattcttaatcaatcctcttacacacacaaatttattactataaagctcctcatttttttctaagcttatatatatgttgcttatgttatcct 52349947  T
Q  478 tctcatttcttcttccatttcannnnnnnnatggttttgattctctcttcaagctt--------cgtgagtgtgtgtt--tctatctataattttttgta 567  Q
    | ||||||||||||||||||||        || ||||||||| |||||||||||||         ||| |||||||||  | | |||||||||||| |||    
T  52349948 tttcatttcttcttccatttca-ttttttgatagttttgattttctcttcaagctttatgtgtgtgtgtgtgtgtgttaatatttctataatttttcgta 52350046  T
Q  568 ttctctaatggatattttttctttcatttcacatacacaggtt 610  Q
    |||||||||||||||||||||||| |||||| |||||||||||    
T  52350047 ttctctaatggatattttttctttgatttcaaatacacaggtt 52350089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 552 - 604
Target Start/End: Complemental strand, 5884306 - 5884254
Alignment:
Q  552 tctataattttttgtattctctaatggatattttttctttcatttcacataca 604  Q
    ||||||||||||||| |||||||||| ||||  ||||||| ||||||||||||    
T  5884306 tctataattttttgttttctctaatgaatatcctttctttgatttcacataca 5884254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 109 - 173
Target Start/End: Complemental strand, 26297725 - 26297662
Alignment:
Q  109 acatgtattctaaactacattttacttatgtgtcacttcaccaatgtttcccttttgtaactaat 173  Q
    ||||||||||||||||||| ||| ||||||||| || |||||||| |||||| ||| ||||||||    
T  26297725 acatgtattctaaactacactttgcttatgtgttacctcaccaat-tttcccctttctaactaat 26297662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 552 - 604
Target Start/End: Complemental strand, 54945660 - 54945608
Alignment:
Q  552 tctataattttttgtattctctaatggatattttttctttcatttcacataca 604  Q
    ||||||||||||||| |||||||||| ||||  ||||||| ||||||||||||    
T  54945660 tctataattttttgttttctctaatgaatatcctttctttgatttcacataca 54945608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 152
Target Start/End: Original strand, 346614 - 346657
Alignment:
Q  109 acatgtattctaaactacattttacttatgtgtcacttcaccaa 152  Q
    ||||||||||||||||||||||| |||||||||||  |||||||    
T  346614 acatgtattctaaactacattttgcttatgtgtcatctcaccaa 346657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 388 - 442
Target Start/End: Complemental strand, 54945776 - 54945722
Alignment:
Q  388 atattcttagtcaatcatcttacacacaaaagtttactataaagctcctcatttt 442  Q
    ||||| ||| || ||| ||||||||||| |||||||||| |||||||||||||||    
T  54945776 atatttttattctatcctcttacacacacaagtttactacaaagctcctcatttt 54945722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 154
Target Start/End: Complemental strand, 5885688 - 5885643
Alignment:
Q  109 acatgtattctaaactacattttacttatgtgtcacttcaccaatg 154  Q
    ||||||||||||| ||||||||| ||||  ||||||||||||||||    
T  5885688 acatgtattctaacctacattttgcttacatgtcacttcaccaatg 5885643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 154
Target Start/End: Complemental strand, 10176766 - 10176721
Alignment:
Q  109 acatgtattctaaactacattttacttatgtgtcacttcaccaatg 154  Q
    ||||||||||||||||||||||| | |||||||||| | |||||||    
T  10176766 acatgtattctaaactacatttttcctatgtgtcaccttaccaatg 10176721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 3744514 - 3744470
Alignment:
Q  109 acatgtattctaaactacattttacttatgtgtcacttcaccaat 153  Q
    ||||||||||||| ||||| ||| |||||||||||| ||||||||    
T  3744514 acatgtattctaacctacactttgcttatgtgtcacctcaccaat 3744470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 203; Significance: 1e-110; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 114 - 367
Target Start/End: Original strand, 5430592 - 5430848
Alignment:
Q  114 tattctaaactacattttacttatgtgtcacttcaccaatgtttcccttttgtaactaatctctcatacttatgccatgtggctctcttttgttcttgat 213  Q
    |||| ||||||||||||| ||||||||||||||||| ||| ||| | ||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  5430592 tattataaactacattttgcttatgtgtcacttcactaatattttctttttgtaactaatttttcatacttatgccatgtggctctcttttgttcttgat 5430691  T
Q  214 tctttactagccattccttactatctaatctttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaatgaatgtgtt 313  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  5430692 tctttactagccattccttactatctaatctttcatttcccatcaattggaaaaactctccatttacttcacttcatggaagttacacaatgaatgtatt 5430791  T
Q  314 ataatccattttat---taatagtgaggggttacattttaaaattattcatattctt 367  Q
    ||||||||||||||   ||||||||||||||||||||||||||||||||||||||||    
T  5430792 ataatccattttattaataatagtgaggggttacattttaaaattattcatattctt 5430848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 382 - 608
Target Start/End: Original strand, 5430835 - 5431061
Alignment:
Q  382 ttattcatattcttagtcaatcatcttacacacaaaagtttactataaagctcctcattttttctaagctcatatatatgttgcttatgttatccttctc 481  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5430835 ttattcatattcttagtcaatcatcttacacacacaagtttactataaaactcctcattttttctaagctcatatatatgttgcttatgttattcttctc 5430934  T
Q  482 atttcttcttccatttcannnnnnnnatggttttgattctctcttcaagcttcgtgagtgtgtgtttctatctataattttttgtattctctaatggata 581  Q
    ||||||||||||||||||        || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5430935 atttcttcttccatttcattttttttatagttttgattctctcttcaagcttcgtgagtgtgtgtttctatctataatttttcgtattctctaatggata 5431034  T
Q  582 ttttttctttcatttcacatacacagg 608  Q
    |||||||||||||||||||||||||||    
T  5431035 ttttttctttcatttcacatacacagg 5431061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 109 - 367
Target Start/End: Complemental strand, 34738062 - 34737806
Alignment:
Q  109 acatgtattctaaactacattttacttatgtgtcacttcaccaatgtttcccttttgtaactaatctctcatacttatgccatgtggctctcttttgttc 208  Q
    ||||||||||||| ||||||||| | |||||||||| | |||||||  |||||||  |||||||||||||||||||||||||||||| ||||||||||||    
T  34738062 acatgtattctaacctacattttgcatatgtgtcaccttaccaatgcctccctttc-taactaatctctcatacttatgccatgtggatctcttttgttc 34737964  T
Q  209 ttgattctttactagccattccttactatctaatctttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaatgaat 308  Q
    |||||||||||||||||||||| ||| ||||| ||||||||||||||||| ||| |||||| |||||| |||||||||||||| ||||||||||||||||    
T  34737963 ttgattctttactagccattccgtacaatcta-tctttcattttccatcagttgcaaaaacactccatctacttcacttcatgcaagttacacaatgaat 34737865  T
Q  309 gtgttataatccattttattaatagtgaggggttacattttaaaattattcatattctt 367  Q
    |  ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  34737864 gcattataatccattttattaacaatgaggggttacattttaaaattattcatattctt 34737806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 114 - 367
Target Start/End: Complemental strand, 53830767 - 53830512
Alignment:
Q  114 tattctaaactacattttacttatgtgtcacttcaccaatgtttcccttttgtaactaatctctcatacttatgccatgtggctctcttttgttcttgat 213  Q
    |||||||| ||||||||| | |||||||||| | ||| |||   ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  53830767 tattctaagctacatttttcctatgtgtcaccttaccgatgcccccctttt-taactaatctctcatacttatgccatgtggctatcttttgttcttgat 53830669  T
Q  214 tctttactagccattccttactatcta---atctttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaatgaatgt 310  Q
    |||||||||||| ||||||||||||||   |||||||||||||||||  ||| |||||| ||| ||||||||||||||||| |||||||||||||||||     
T  53830668 tctttactagccgttccttactatctatctatctttcattttccatcggttgcaaaaacactctatttacttcacttcatgcaagttacacaatgaatgc 53830569  T
Q  311 gttataatccattttattaatagtgaggggttacattttaaaattattcatattctt 367  Q
     ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  53830568 attataatccattttattaatattgaggggttacattttaaaattattcatattctt 53830512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 109 - 367
Target Start/End: Original strand, 21802775 - 21803031
Alignment:
Q  109 acatgtattctaaactacattttacttatgtgtcacttcaccaatgtttcccttttgtaactaatctctcatacttatgccatgtggctctcttttgttc 208  Q
    ||||||||||||| ||||||||  | |||||||||| | |||||||   ||||||  ||||||||||||||||||||||||| |||||||||||||||||    
T  21802775 acatgtattctaagctacatttcgcctatgtgtcaccttaccaatgcccccctttc-taactaatctctcatacttatgccaagtggctctcttttgttc 21802873  T
Q  209 ttgattctttactagccattccttactatctaatctttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaatgaat 308  Q
    ||||||||||||||||||||| |||||||||| |||||||||| | |||| ||| ||||||  | ||||||||||||||| || ||||||||||||||||    
T  21802874 ttgattctttactagccattcattactatcta-tctttcatttcctatcagttgcaaaaacatttcatttacttcacttcttgcaagttacacaatgaat 21802972  T
Q  309 gtgttataatccattttattaatagtgaggggttacattttaaaattattcatattctt 367  Q
    |  ||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||    
T  21802973 gcattataatccattttattaatattgaggggttacgttttaaaattgttcatattctt 21803031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 109 - 367
Target Start/End: Complemental strand, 21633033 - 21632776
Alignment:
Q  109 acatgtattctaaactacattttacttatgtgtcacttcaccaatgtttcccttttgtaactaatctctcatacttatgccatgtggctctcttttgttc 208  Q
    ||||||||||||| ||||||||| | |||||||||| | ||||||    ||||||  ||||||||||||||||||||||||| ||||| |||||||||||    
T  21633033 acatgtattctaagctacattttgcctatgtgtcaccttaccaatacccccctttc-taactaatctctcatacttatgccaagtggcgctcttttgttc 21632935  T
Q  209 ttgattctttactagccattccttactatctaatctttcattttccatcaattg-gaaaaactctccatttacttcacttcatggaagttacacaatgaa 307  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| |||| |||  ||||||  | ||||||||||||||| || ||||||||| |||||    
T  21632934 ttgattctttactagccattccttactatct-atctttcattttctatcagttgcaaaaaacatttcatttacttcacttcttgcaagttacacgatgaa 21632836  T
Q  308 tgtgttataatccattttattaatagtgaggggttacattttaaaattattcatattctt 367  Q
    ||  |||| |||||||||||||||| ||||||||||  |||||||||| |||||||||||    
T  21632835 tgcattatgatccattttattaatattgaggggttatgttttaaaattgttcatattctt 21632776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 382 - 610
Target Start/End: Complemental strand, 34737819 - 34737583
Alignment:
Q  382 ttattcatattcttagtcaatcatcttacacacaaaagtttactataaagctcctcatttttt-ctaagctcatatatatgttgcttatgttatccttct 480  Q
    ||||||||||||||  |||||| ||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |    
T  34737819 ttattcatattcttgatcaatcctcttacacacacaagtttactataaagctcctcatttttttctaagcttatatatatgttgcttatgttatcctttt 34737720  T
Q  481 catttcttcttccatttcannnnnnnnatggttttgattctctcttcaagcttcgtgagtgtgt------gtttcta--tctataattttttgtattctc 572  Q
    |||||||||||||||||||        || ||||||||| ||||||||||||| ||| ||||||      | |||||  |||||||||||| ||||||||    
T  34737719 catttcttcttccatttca-ttttttgatagttttgattttctcttcaagctttgtgtgtgtgtgcgcgcgcttctatttctataatttttcgtattctc 34737621  T
Q  573 taatggatattttttctttcatttcacatacacaggtt 610  Q
    ||||||||||||||||||| |||||| |||||||||||    
T  34737620 taatggatattttttctttgatttcaaatacacaggtt 34737583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 382 - 606
Target Start/End: Complemental strand, 53830525 - 53830294
Alignment:
Q  382 ttattcatattcttagtcaatcatcttacacacaaaagttta---ctataaagctcctcatttttt-ctaagctcatatatatgttgcttatgttatcct 477  Q
    ||||||||||||||| |||||| ||||||||||| |||||||   ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  53830525 ttattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcatttttttctaagcttatatatatgttgcttatgttatcct 53830426  T
Q  478 tctcatttcttcttccatttcannnnnnnnatggttttgattctctcttcaagcttcgtg--agtgtgtgtttcta--tctataattttttgtattctct 573  Q
    | ||||||||||||||||||||        || ||||||||| ||||||||||||| |||    ||||||||||||  |||||||||||| |||||||||    
T  53830425 tttcatttcttcttccatttca-ttttttgatagttttgattttctcttcaagctttgtgtttatgtgtgtttctatttctataatttttcgtattctct 53830327  T
Q  574 aatggatattttttctttcatttcacatacaca 606  Q
    |||||||||||||||||| |||||| |||||||    
T  53830326 aatggatattttttctttgatttcaaatacaca 53830294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 382 - 610
Target Start/End: Original strand, 46092425 - 46092662
Alignment:
Q  382 ttattcatattcttagtcaatcatcttacacacaaaagttta---ctataaagctcctcatttt-ttctaagctcatatatatgttgcttatgttatcct 477  Q
    ||||||||||||||| |||||| ||||||||||| |||||||   ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  46092425 ttattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcatttttttctaagcttatatatatgttgcttatgttatcct 46092524  T
Q  478 tctcatttcttcttccatttcannnnnnnnatggttttgattctctcttcaagctt----cgtgagtgtgtgtttcta--tctataattttttgtattct 571  Q
    | ||||||||||||||||||||        || ||||||||| |||||| ||||||     ||| |||||||||||||  |||||||||||| |||||||    
T  46092525 tttcatttcttcttccatttca-ttttttgatagttttgattttctctttaagctttgtgtgtgtgtgtgtgtttctatttctataatttttcgtattct 46092623  T
Q  572 ctaatggatattttttctttcatttcacatacacaggtt 610  Q
    ||||| |||||||||||||| |||||| |||||||||||    
T  46092624 ctaatagatattttttctttgatttcaaatacacaggtt 46092662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 389 - 610
Target Start/End: Complemental strand, 2500657 - 2500431
Alignment:
Q  389 tattcttagtcaatcatcttacacacaaaagtttactataaagctcctcatttttt-ctaagctcatatatatgttgcttatgttatccttctcatttct 487  Q
    |||||||  |||||| ||||||||||| |||||||||||||| || |||||||||| ||||||| | ||||||||||||||| |||||||| ||||||||    
T  2500657 tattcttgatcaatcctcttacacacacaagtttactataaatctactcatttttttctaagcttacatatatgttgcttatattatccttttcatttct 2500558  T
Q  488 tcttccatttcannnnnnnnatggttttgattctctcttcaagcttcgtgagtgtgtg--tttcta--tctataattttttgtattctctaatggatatt 583  Q
    ||||||||||||        |  ||||||||| ||||||||||||||||| |||||||  ||||||  ||||||||||||  ||||||||||||||||||    
T  2500557 tcttccatttcattttttttacagttttgattttctcttcaagcttcgtgtgtgtgtgtttttctatttctataatttttcatattctctaatggatatt 2500458  T
Q  584 ttttctttcatttcacatacacaggtt 610  Q
    |||||||| |||||||||| |||||||    
T  2500457 ttttctttgatttcacataaacaggtt 2500431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 231 - 367
Target Start/End: Complemental strand, 2505143 - 2505008
Alignment:
Q  231 ttactatctaatctttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaatgaatgtgttataatccattttattaa 330  Q
    |||||||||| ||||||||||||||||| ||  |||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||    
T  2505143 ttactatcta-tctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaa 2505045  T
Q  331 tagtgaggggttacattttaaaattattcatattctt 367  Q
    || ||||||||||||||||||||||||||||||||||    
T  2505044 tattgaggggttacattttaaaattattcatattctt 2505008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 179 - 367
Target Start/End: Complemental strand, 2500838 - 2500651
Alignment:
Q  179 atacttatgccatgtggctctcttttgttcttgattctttactagccattccttactatctaatctttcattttccatcaattggaaaaactctccattt 278  Q
    |||||||||||||||||||||||||||||||||||||  |||||  ||||||||||||| || |||||||||| |||||  ||| |||||  | ||||||    
T  2500838 atacttatgccatgtggctctcttttgttcttgattccctactaatcattccttactattta-tctttcatttcccatccgttgcaaaaatacaccattt 2500740  T
Q  279 acttcacttcatggaagttacacaatgaatgtgttataatccattttattaatagtgaggggttacattttaaaattattcatattctt 367  Q
    ||||||||||||| ||||| |||||||||||  ||||||||||||||||||||| || | ||||||||||||||||||||  |||||||    
T  2500739 acttcacttcatgcaagttgcacaatgaatgcattataatccattttattaatattgtgcggttacattttaaaattatttgtattctt 2500651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 382 - 610
Target Start/End: Complemental strand, 2505021 - 2504780
Alignment:
Q  382 ttattcatattcttagtcaatcatcttacacacaaaagttta---ctataaagctcctcatttttt-ctaagctcatatatatgttgcttatgttatcct 477  Q
    ||||||||||||||| |||||| ||||||||||| || ||||   ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  2505021 ttattcatattcttaatcaatcctcttacacacacaaatttattactataaagctcctcatttttttctaagcttatatatatgttgcttatgttatcct 2504922  T
Q  478 tctcatttcttcttccatttcannnnnnnnatggttttgattctctcttcaagctt--------cgtgagtgtgtgtt--tctatctataattttttgta 567  Q
    | ||||||||||||||||||||        || ||||||||| |||||||||||||         ||| |||||||||  | | |||||||||||| |||    
T  2504921 tttcatttcttcttccatttca-ttttttgatagttttgattttctcttcaagctttatgtgtgtgtgtgtgtgtgttaatatttctataatttttcgta 2504823  T
Q  568 ttctctaatggatattttttctttcatttcacatacacaggtt 610  Q
    |||||||||||||||||||||||| |||||| |||||||||||    
T  2504822 ttctctaatggatattttttctttgatttcaaatacacaggtt 2504780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 385 - 610
Target Start/End: Complemental strand, 21632786 - 21632562
Alignment:
Q  385 ttcatattcttagtcaatcatcttacacacaaaagtttactataaagctcctcatt--ttttctaagctcatatatatgttgcttatgttatccttctca 482  Q
    |||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||  ||||||||||| || ||| ||||||||||||||||||| |||    
T  21632786 ttcatattcttaatcaatcttcttacacacacaagtttactataaagctcctcattttttttctaagcttat-tatgtgttgcttatgttatccttttca 21632688  T
Q  483 tttcttcttccatttcannnnnnnnatggttttgattctctcttcaagcttcgtgagtgtgtgtttctatctataattttttgtattctctaatggatat 582  Q
    ||||||||||||||| |        || |||||| || ||||||||||||| ||| || ||| | | | |||||||| ||| |||||||||||||||||     
T  21632687 tttcttcttccatttta-ttttttgatagttttgcttttctcttcaagctttgtgtgtatgtttctatttctataatatttcgtattctctaatggata- 21632590  T
Q  583 tttttctttcatttcacatacacaggtt 610  Q
    ||||||||| |||||| |||||||||||    
T  21632589 tttttctttgatttcaaatacacaggtt 21632562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 241 - 367
Target Start/End: Original strand, 46092312 - 46092438
Alignment:
Q  241 atctttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaatgaatgtgttataatccattttattaatagtgagggg 340  Q
    |||||||||||||||||  ||  |||||||  ||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||| |||||||    
T  46092312 atctttcattttccatcggttacaaaaacttgccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattgagggg 46092411  T
Q  341 ttacattttaaaattattcatattctt 367  Q
    |||||||||||||||||||||||||||    
T  46092412 ttacattttaaaattattcatattctt 46092438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 241 - 367
Target Start/End: Original strand, 46134837 - 46134963
Alignment:
Q  241 atctttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaatgaatgtgttataatccattttattaatagtgagggg 340  Q
    |||||||||||||||||  ||  |||||||  ||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||| |||||||    
T  46134837 atctttcattttccatcggttacaaaaacttgccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattgagggg 46134936  T
Q  341 ttacattttaaaattattcatattctt 367  Q
    |||||||||||||||||||||||||||    
T  46134937 ttacattttaaaattattcatattctt 46134963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 382 - 499
Target Start/End: Original strand, 46134950 - 46135071
Alignment:
Q  382 ttattcatattcttagtcaatcatcttacacacaaaagttta---ctataaagctcctcatttt-ttctaagctcatatatatgttgcttatgttatcct 477  Q
    ||||||||||||||| |||||| ||||||||||| |||||||   ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  46134950 ttattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcatttttttctaagcttatatatatgttgcttatgttatcct 46135049  T
Q  478 tctcatttcttcttccatttca 499  Q
    | ||||||||||||||||||||    
T  46135050 tttcatttcttcttccatttca 46135071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 385 - 606
Target Start/End: Original strand, 21803021 - 21803242
Alignment:
Q  385 ttcatattcttagtcaatcatcttacacacaaaagtttactataaagctcctca-ttttttctaagctcatatatatgttgcttatgttatccttctcat 483  Q
    |||||||||||| ||||| |||||||||||| |||||||||||||||||||||| ||||||||||||| || ||| ||||||||||||||||||| ||||    
T  21803021 ttcatattcttaatcaataatcttacacacacaagtttactataaagctcctcatttttttctaagcttat-tatgtgttgcttatgttatccttttcat 21803119  T
Q  484 ttcttcttccatttcannnnnnnnatggttttgattctctcttcaagcttcgtgagtgtgtgtttctatctata--attttttgtattctctaatggata 581  Q
     ||||||||||||| |        || |||||| || ||||||||||||| ||| |||||| | | | ||||||  || ||| ||||||||||||| |||    
T  21803120 ctcttcttccatttta-ttttttgatagttttgcttttctcttcaagctttgtgtgtgtgtttctatttctataatatatttcgtattctctaatgaata 21803218  T
Q  582 ttttttctttcatttcacatacaca 606  Q
     ||||||||| |||||| |||||||    
T  21803219 -tttttctttgatttcaaatacaca 21803242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 199 - 367
Target Start/End: Original strand, 20036251 - 20036418
Alignment:
Q  199 tcttttgttcttgattctttactagccattccttactatctaatctttcattttccatcaattggaaaaa-ctctccatttacttcacttcatggaagtt 297  Q
    |||||||||||| |||||||||||| ||||| |||||||||| |||||||||| ||||||  || ||||| | || || ||||||||||||||| |||||    
T  20036251 tcttttgttctt-attctttactagtcattcattactatcta-tctttcatttcccatcagatgtaaaaaacacttcagttacttcacttcatgcaagtt 20036348  T
Q  298 acacaatgaatgtgttataatccattttattaatagtgaggggttacattttaaaattattcatattctt 367  Q
     || ||||||||  ||||||| ||||||||||||| ||||  ||||||||||||||||| ||||||||||    
T  20036349 gcataatgaatgcattataattcattttattaatattgagcagttacattttaaaattaatcatattctt 20036418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 109 - 201
Target Start/End: Original strand, 26382346 - 26382438
Alignment:
Q  109 acatgtattctaaactacattttacttatgtgtcacttcaccaatgtttcccttttgtaactaatctctcatacttatgccatgtggctctct 201  Q
    ||||||||||||| ||||||||| ||||  |||||| ||||||| | |  || |||||||| |||||||||||||||||||||||||||||||    
T  26382346 acatgtattctaagctacattttccttacatgtcacctcaccaaagctctccctttgtaaccaatctctcatacttatgccatgtggctctct 26382438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 386 - 444
Target Start/End: Original strand, 20036409 - 20036467
Alignment:
Q  386 tcatattcttagtcaatcatcttacacacaaaagtttactataaagctcctcatttttt 444  Q
    ||||||||||| |||||| |||||||| || ||||||||||||||| ||||||||||||    
T  20036409 tcatattcttaatcaatcctcttacactcacaagtttactataaagttcctcatttttt 20036467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 539 - 602
Target Start/End: Original strand, 20036522 - 20036587
Alignment:
Q  539 gtgtgtgtttctat--ctataattttttgtattctctaatggatattttttctttcatttcacata 602  Q
    ||||||||||||||  ||||||||||  |||||| ||||||||| |||||||||| |||| |||||    
T  20036522 gtgtgtgtttctatttctataattttccgtattccctaatggattttttttctttgattttacata 20036587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 115 - 153
Target Start/End: Original strand, 27256664 - 27256702
Alignment:
Q  115 attctaaactacattttacttatgtgtcacttcaccaat 153  Q
    ||||||||||||| |||||||||||||||| ||||||||    
T  27256664 attctaaactacactttacttatgtgtcacctcaccaat 27256702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 109 - 163
Target Start/End: Original strand, 43942134 - 43942188
Alignment:
Q  109 acatgtattctaaactacattttacttatgtgtcacttcaccaatgtttcccttt 163  Q
    ||||||||||||| ||||||||| ||||  |||||||||||||||| | ||||||    
T  43942134 acatgtattctaatctacattttgcttacatgtcacttcaccaatgatccccttt 43942188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 442
Target Start/End: Original strand, 43943567 - 43943604
Alignment:
Q  405 tcttacacacaaaagtttactataaagctcctcatttt 442  Q
    ||||||||||| |||||||||| |||||||||||||||    
T  43943567 tcttacacacacaagtttactacaaagctcctcatttt 43943604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 193; Significance: 1e-104; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 111 - 367
Target Start/End: Original strand, 20171837 - 20172093
Alignment:
Q  111 atgtattctaaactacattttacttatgtgtcacttcaccaatgtttcccttttgtaactaatctctcatacttatgccatgtggctctcttttgttctt 210  Q
    ||||||| ||||||||||||| ||||||||||||||||| ||| ||| | ||||||||||||| | | ||||||||| ||||||||||||||||||||||    
T  20171837 atgtattttaaactacattttgcttatgtgtcacttcactaatattttctttttgtaactaattttttatacttatgtcatgtggctctcttttgttctt 20171936  T
Q  211 gattctttactagccattccttactatctaatctttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaatgaatgt 310  Q
    ||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  20171937 gattctttactagtcatttcttactatctaatctttcatttcccatcaattggaaaaactctctatttacttcacttcatggaagttacacaatgaatgt 20172036  T
Q  311 gttataatccattttattaatagtgaggggttacattttaaaattattcatattctt 367  Q
     ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  20172037 attataatccattttattaatagtgaggggtttcattttaaaattattcatattctt 20172093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 382 - 610
Target Start/End: Complemental strand, 11428162 - 11427934
Alignment:
Q  382 ttattcatattcttagtcaatcatcttacacacaaaagtttactataaagctcctcattttttctaagctcatatatatgttgcttatgttatccttctc 481  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11428162 ttattcatattcttagtcaatcatcttacacacagaagtttacgataaagctcctcattttttctaagctcatatatatgttgcttatgttatccttctc 11428063  T
Q  482 atttcttcttccatttcannnnnnnnatggttttgattctctcttcaagcttcgtgagtgtgtgtttctatctataattttttgtattctctaatggata 581  Q
    ||||||||||||||||||        || ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  11428062 atttcttcttccatttcattttttttatagttttgattttctcttcaagcttcgtgagtgtgtgtttctatctataatttttcgtattctctaatgaata 11427963  T
Q  582 ttttttctttcatttcacatacacaggtt 610  Q
    |||||||||||||||||||||||||||||    
T  11427962 ttttttctttcatttcacatacacaggtt 11427934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 109 - 307
Target Start/End: Complemental strand, 11428382 - 11428184
Alignment:
Q  109 acatgtattctaaactacattttacttatgtgtcacttcaccaatgtttcccttttgtaactaatctctcatacttatgccatgtggctctcttttgttc 208  Q
    ||||||||||||| ||||||||| |||||||||||| |||| ||| ||||||||||||||||||| | ||||||||||||| ||||||||||||||||||    
T  11428382 acatgtattctaagctacattttgcttatgtgtcacctcactaatatttcccttttgtaactaatttttcatacttatgccttgtggctctcttttgttc 11428283  T
Q  209 ttgattctttactagccattccttactatctaatctttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaatgaa 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11428282 ttgattctttactagccattccttactatctaatctttcattttccatcaattggaaaaactatccatttacttcacttcatggaagttacacaatgaa 11428184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 382 - 604
Target Start/End: Original strand, 20172080 - 20172303
Alignment:
Q  382 ttattcatattcttagtcaatcatcttacacacaaaagtttactataaagctcctcattttttctaagctcatatatatgttgcttatgttatccttctc 481  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  20172080 ttattcatattcttagtcaatcatcttacacacacaagtttactataaagctcctcatttt--ctaagctcatatatatgttgcttatgttatccttctc 20172177  T
Q  482 atttcttcttccatttca---nnnnnnnnatggttttgattctctcttcaagcttcgtgagtgtgtgtttctatctataattttttgtattctctaatgg 578  Q
    ||||||||||||||||||           || ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  20172178 atttcttcttccatttcatttttttttttatagttttgattctctcttcaaacttcgtgagtgtgtgtttctatctataatttttcgtattctctaatgg 20172277  T
Q  579 atattttttctttcatttcacataca 604  Q
    |||||||||||||||||| |||||||    
T  20172278 atattttttctttcatttaacataca 20172303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 111 - 367
Target Start/End: Complemental strand, 8150752 - 8150498
Alignment:
Q  111 atgtattctaaactacattttacttatgtgtcacttcaccaatgtttcccttttgtaactaatctctcatacttatgccatgtggctctcttttgttctt 210  Q
    ||||||||||| ||||||||| | |||||||||| | |||||||   ||||||  ||||||||||||||||||||||||||||| ||| |||||||||||    
T  8150752 atgtattctaagctacattttgcatatgtgtcaccttaccaatgcccccctttc-taactaatctctcatacttatgccatgtgactcacttttgttctt 8150654  T
Q  211 gattctttactagccattccttactatctaatctttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaatgaatgt 310  Q
    |||||||||||||||||| ||||||||||| |||||||||| |||||| ||| |||||| ||||||||||||||||| |||  ||||||||||||||||     
T  8150653 gattctttactagccatttcttactatcta-tctttcatttcccatcagttgcaaaaacactccatttacttcactttatgcgagttacacaatgaatgc 8150555  T
Q  311 gttataatccattttattaatagtgaggggttacattttaaaattattcatattctt 367  Q
     |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  8150554 attataatcaattttattaatattgaggggttacattttaaaattattcatattctt 8150498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 109 - 367
Target Start/End: Original strand, 10186233 - 10186489
Alignment:
Q  109 acatgtattctaaactacattttacttatgtgtcacttcaccaatgtttcccttttgtaactaatctctcatacttatgccatgtggctctcttttgttc 208  Q
    ||||||||||||| ||||||||  | |||||||||| | |||||||   ||||||  |||||||| |||| ||||||||||| ||| |||||||||||||    
T  10186233 acatgtattctaagctacatttcgcctatgtgtcaccttaccaatgcccccctttc-taactaatatctcttacttatgccaagtgactctcttttgttc 10186331  T
Q  209 ttgattctttactagccattccttactatctaatctttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaatgaat 308  Q
    ||||||||||||||| |||||||||||||||| |||||||||| | |||| ||| ||||||  | ||||||| ||||||| || ||||||||||||||||    
T  10186332 ttgattctttactagtcattccttactatcta-tctttcatttcctatcagttgcaaaaacatttcatttacctcacttcttgcaagttacacaatgaat 10186430  T
Q  309 gtgttataatccattttattaatagtgaggggttacattttaaaattattcatattctt 367  Q
    |  ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  10186431 gcattataatccattttattaatattgaggggttacattttaaaattgttcatattctt 10186489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 109 - 367
Target Start/End: Original strand, 4138196 - 4138459
Alignment:
Q  109 acatgtattctaaactacattttacttatgtgtcacttcaccaatgtttcccttttgtaactaatctctcatacttatgccatgtggctctcttttgttc 208  Q
    ||||||||||||| ||||||||  | |||||||||| | |||||||   ||||||  ||||||||||||||||||||||||| |||||||||||||||||    
T  4138196 acatgtattctaagctacatttcgcctatgtgtcaccttaccaatgcccccctttc-taactaatctctcatacttatgccaagtggctctcttttgttc 4138294  T
Q  209 ttgattctttactagccattccttactatcta------atctttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacaca 302  Q
    |||||||||||||||||||||  |||||||||      ||||||||||| | |||  ||| ||||||  | ||||||||||||||| || ||||||||||    
T  4138295 ttgattctttactagccattctctactatctatctttcatctttcatttcctatccgttgcaaaaacatttcatttacttcacttcttgcaagttacaca 4138394  T
Q  303 atgaatgtgttataatccattttattaatagtgaggggttacattttaaaattattcatattctt 367  Q
    |||||||  |||||||| |||||||||||| ||||||||||| |||||||||| |||||||||||    
T  4138395 atgaatgcattataatctattttattaatattgaggggttacgttttaaaattgttcatattctt 4138459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 385 - 610
Target Start/End: Original strand, 10186479 - 10186705
Alignment:
Q  385 ttcatattcttagtcaatcatcttacacacaaaagtttactataaagctcctca-ttttttctaagctcatatatatgttgcttatgttatccttctcat 483  Q
    |||||||||||| |||||| ||||||||||| |||||||||||||||||||||| ||||||| ||||| || ||| ||||||||||||||||||| ||||    
T  10186479 ttcatattcttaatcaatcctcttacacacacaagtttactataaagctcctcatttttttccaagcttat-tatgtgttgcttatgttatccttttcat 10186577  T
Q  484 ttcttcttccatttcannnnnnnnatggttttgattctctcttcaagcttcgtgagtgtgtgtttcta--tctataattttttgtattctctaatggata 581  Q
    ||| ||||||||||||        || |||||| || ||||||||||||| ||| |||||||||||||  |||||||| ||| |||||||||||||||||    
T  10186578 ttcctcttccatttcatttttttgatagttttgcttttctcttcaagctttgtgtgtgtgtgtttctatttctataatatttcgtattctctaatggata 10186677  T
Q  582 ttttttctttcatttcacatacacaggtt 610  Q
     ||||||||| |||||| |||||||||||    
T  10186678 -tttttctttgatttcaaatacacaggtt 10186705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 439 - 610
Target Start/End: Complemental strand, 918945 - 918775
Alignment:
Q  439 ttttttctaagctcatatatatgttgcttatgttatccttctcatttcttcttccatttcannnnnnnnatggttttgattctctcttcaagcttcgtga 538  Q
    ||||||||||||| |||||||| |||| |||||||||||| ||||||||||||||||||||        || ||||||||| |||||||||| || |||     
T  918945 ttttttctaagcttatatatatattgcatatgttatccttttcatttcttcttccatttca-ttttttgatagttttgattttctcttcaagtttagtgt 918847  T
Q  539 gtgtgtgtttctatctataattttttgtattctctaatggatattttttctttcatttcacatacacaggtt 610  Q
    |||| | | | | |||||||||||| |||||||||||||||||||||||| || |||||| || ||||||||    
T  918846 gtgtatttctatttctataatttttcgtattctctaatggatattttttccttgatttcaaatgcacaggtt 918775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 385 - 610
Target Start/End: Original strand, 4138449 - 4138668
Alignment:
Q  385 ttcatattcttagtcaatcatcttacacacaaaagtttactataaagctcctcatttttt-ctaagctcatatatatgttgcttatgttatccttctcat 483  Q
    |||||||||||| ||||   ||||||||||| ||||||||      |||||||||||||| ||||||| || ||| ||||||||||||||||||| ||||    
T  4138449 ttcatattcttaatcaagactcttacacacacaagtttac------gctcctcatttttttctaagcttat-tatgtgttgcttatgttatccttttcat 4138541  T
Q  484 ttcttcttccatttcannnnnnnnatggttttgattctctcttcaagcttcgtgagtgtgtgtttctat--ctataattttttgtattctctaatggata 581  Q
    ||||||||||||||||        || |||||| || ||||||||||| | ||| ||||||||||||||  ||||||| ||| |||||||||||||||||    
T  4138542 ttcttcttccatttcattttttg-atagttttgcttttctcttcaagccttgtgtgtgtgtgtttctatttctataatatttcgtattctctaatggata 4138640  T
Q  582 ttttttctttcatttcacatacacaggtt 610  Q
     |||||| || |||||| |||||||||||    
T  4138641 -tttttcattgatttcaaatacacaggtt 4138668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 312 - 367
Target Start/End: Complemental strand, 919017 - 918962
Alignment:
Q  312 ttataatccattttattaatagtgaggggttacattttaaaattattcatattctt 367  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  919017 ttataatccattttattaatattgaggggttacattttaaaattattcatattctt 918962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 382 - 444
Target Start/End: Complemental strand, 8150511 - 8150449
Alignment:
Q  382 ttattcatattcttagtcaatcatcttacacacaaaagtttactataaagctcctcatttttt 444  Q
    ||||||||||||||| ||| || ||||||||||| ||||||||||||||||||||||||||||    
T  8150511 ttattcatattcttaatcagtcctcttacacacacaagtttactataaagctcctcatttttt 8150449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 109 - 163
Target Start/End: Original strand, 32663985 - 32664039
Alignment:
Q  109 acatgtattctaaactacattttacttatgtgtcacttcaccaatgtttcccttt 163  Q
    ||||||||||||||||||| ||| |||||||||||| |||||||| |||||||||    
T  32663985 acatgtattctaaactacactttgcttatgtgtcacctcaccaatttttcccttt 32664039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 332 - 367
Target Start/End: Complemental strand, 11428184 - 11428149
Alignment:
Q  332 agtgaggggttacattttaaaattattcatattctt 367  Q
    ||||||||||||||||||||||||||||||||||||    
T  11428184 agtgaggggttacattttaaaattattcatattctt 11428149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 9083191 - 9083151
Alignment:
Q  109 acatgtattctaaactacattttacttatgtgtcacttcac 149  Q
    ||||||||||||||||||| ||| |||||||||||| ||||    
T  9083191 acatgtattctaaactacactttgcttatgtgtcacctcac 9083151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 109 - 149
Target Start/End: Original strand, 31686162 - 31686202
Alignment:
Q  109 acatgtattctaaactacattttacttatgtgtcacttcac 149  Q
    |||||||||||||||||||| || |||||||||||| ||||    
T  31686162 acatgtattctaaactacatattgcttatgtgtcacctcac 31686202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 193; Significance: 1e-104; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 111 - 367
Target Start/End: Original strand, 44393547 - 44393803
Alignment:
Q  111 atgtattctaaactacattttacttatgtgtcacttcaccaatgtttcccttttgtaactaatctctcatacttatgccatgtggctctcttttgttctt 210  Q
    ||||||| ||||||||||||| ||||||||||||||||| ||| ||| | ||||||||||||| | | ||||||||| ||||||||||||||||||||||    
T  44393547 atgtattttaaactacattttgcttatgtgtcacttcactaatattttctttttgtaactaattttttatacttatgtcatgtggctctcttttgttctt 44393646  T
Q  211 gattctttactagccattccttactatctaatctttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaatgaatgt 310  Q
    ||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  44393647 gattctttactagtcatttcttactatctaatctttcatttcccatcaattggaaaaactctctatttacttcacttcatggaagttacacaatgaatgt 44393746  T
Q  311 gttataatccattttattaatagtgaggggttacattttaaaattattcatattctt 367  Q
     ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  44393747 attataatccattttattaatagtgaggggtttcattttaaaattattcatattctt 44393803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 114 - 367
Target Start/End: Complemental strand, 47234079 - 47233829
Alignment:
Q  114 tattctaaactacattttacttatgtgtcacttcaccaatgtttcccttttgtaactaatctctcatacttatgccatgtggctctcttttgttcttgat 213  Q
    |||||||||||| ||||| | |||||||||||| |||||||   ||| ||| |||||||||||||||||||||| ||||||||| |||||||||||||||    
T  47234079 tattctaaactatatttttcctatgtgtcactttaccaatgc--cccctttctaactaatctctcatacttatgtcatgtggctatcttttgttcttgat 47233982  T
Q  214 tctttactagccattccttactatctaatctttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaatgaatgtgtt 313  Q
    |||||||||| |||||||||||||||| ||||||||||||||||| ||| |||||| || |||||||||||||||||| |||||||||||||||||  ||    
T  47233981 tctttactagtcattccttactatcta-tctttcattttccatcagttgcaaaaacacttcatttacttcacttcatgcaagttacacaatgaatgcatt 47233883  T
Q  314 ataatccattttattaatagtgaggggttacattttaaaattattcatattctt 367  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  47233882 ataatccattttattaatattaaggggttacattttaaaattattcatattctt 47233829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 382 - 604
Target Start/End: Original strand, 44393790 - 44394014
Alignment:
Q  382 ttattcatattcttagtcaatcatcttacacacaaaagtttactataaagctcctcattttttctaagctcatatatatgttgcttatgttatccttctc 481  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  44393790 ttattcatattcttagtcaatcatcttacacacacaagtttactataaagctcctcatttt--ctaagctcatatatatgttgcttatgttatccttctc 44393887  T
Q  482 atttcttcttccatttca----nnnnnnnnatggttttgattctctcttcaagcttcgtgagtgtgtgtttctatctataattttttgtattctctaatg 577  Q
    ||||||||||||||||||            || ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  44393888 atttcttcttccatttcattttttttttttatagttttgattctctcttcaaacttcgtgagtgtgtgtttctatctataatttttcgtattctctaatg 44393987  T
Q  578 gatattttttctttcatttcacataca 604  Q
    ||||||||||||||||||| |||||||    
T  44393988 gatattttttctttcatttaacataca 44394014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 231 - 367
Target Start/End: Complemental strand, 25419717 - 25419582
Alignment:
Q  231 ttactatctaatctttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaatgaatgtgttataatccattttattaa 330  Q
    |||||||||| ||||||||||||||||| ||  |||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||    
T  25419717 ttactatcta-tctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaa 25419619  T
Q  331 tagtgaggggttacattttaaaattattcatattctt 367  Q
    || ||||||||||||||||||||||||||||||||||    
T  25419618 tattgaggggttacattttaaaattattcatattctt 25419582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 231 - 367
Target Start/End: Complemental strand, 39067012 - 39066877
Alignment:
Q  231 ttactatctaatctttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaatgaatgtgttataatccattttattaa 330  Q
    |||||||||| ||||||||||||||||| ||  |||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||    
T  39067012 ttactatcta-tctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaa 39066914  T
Q  331 tagtgaggggttacattttaaaattattcatattctt 367  Q
    || ||||||||||||||||||||||||||||||||||    
T  39066913 tattgaggggttacattttaaaattattcatattctt 39066877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 231 - 367
Target Start/End: Complemental strand, 5768206 - 5768071
Alignment:
Q  231 ttactatctaatctttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaatgaatgtgttataatccattttattaa 330  Q
    |||||||||| ||||||||||||||||| ||  |||||||||||||||||||||||||||| |||||||||||||||||  |||||||| ||||||||||    
T  5768206 ttactatcta-tctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatcaattttattaa 5768108  T
Q  331 tagtgaggggttacattttaaaattattcatattctt 367  Q
    || ||||||||||||||||||||||||||||||||||    
T  5768107 tattgaggggttacattttaaaattattcatattctt 5768071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 382 - 610
Target Start/End: Complemental strand, 47233842 - 47233607
Alignment:
Q  382 ttattcatattcttagtcaatcatcttacacacaaaagttta---ctataaagctcctcattttttc-taagctcatatatatgttgcttatgttatcct 477  Q
    ||||||||||||||| |||||| ||||||||||| |||||||   |||||||||||||||||||||  |||||| ||||||||||||||||| |||||||    
T  47233842 ttattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcatttttttataagcttatatatatgttgcttatattatcct 47233743  T
Q  478 tctcatttcttcttccatttcannnnnnnnatggttttgattctctcttcaagctt--cgtgagtgtgtgtttcta--tctataattttttgtattctct 573  Q
    | ||||||||||||||||||||        || ||||||||| |||||||||||||   ||| |||||||||||||  ||||||| ||||  ||||||||    
T  47233742 tttcatttcttcttccatttca-ttttttgatagttttgattttctcttcaagctttgtgtgtgtgtgtgtttctatttctataacttttcatattctct 47233644  T
Q  574 aatggatattttttctttcatttcacatacacaggtt 610  Q
    |||||||||||||||||| |||||| | |||||||||    
T  47233643 aatggatattttttctttgatttcaaagacacaggtt 47233607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 382 - 610
Target Start/End: Complemental strand, 25419595 - 25419354
Alignment:
Q  382 ttattcatattcttagtcaatcatcttacacacaaaagttta---ctataaagctcctcatttttt-ctaagctcatatatatgttgcttatgttatcct 477  Q
    ||||||||||||||| |||||| ||||||||||| || ||||   ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  25419595 ttattcatattcttaatcaatcctcttacacacacaaatttattactataaagctcctcatttttttctaagcttatatatatgttgcttatgttatcct 25419496  T
Q  478 tctcatttcttcttccatttcannnnnnnnatggttttgattctctcttcaagctt--------cgtgagtgtgtgtt--tctatctataattttttgta 567  Q
    | ||||||||||||||||||||        || ||||||||| |||||||||||||         ||| |||||||||  | | |||||||||||| |||    
T  25419495 tttcatttcttcttccatttca-ttttttgatagttttgattttctcttcaagctttatgtgtgtgtgtgtgtgtgttaatatttctataatttttcgta 25419397  T
Q  568 ttctctaatggatattttttctttcatttcacatacacaggtt 610  Q
    |||||||||||||||||||||||| |||||| |||||||||||    
T  25419396 ttctctaatggatattttttctttgatttcaaatacacaggtt 25419354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 382 - 499
Target Start/End: Complemental strand, 5768084 - 5767963
Alignment:
Q  382 ttattcatattcttagtcaatcatcttacacacaaaagttta---ctataaagctcctcatttttt-ctaagctcatatatatgttgcttatgttatcct 477  Q
    ||||||||||||||| |||||| ||||||||||| |||||||   ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  5768084 ttattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcatttttttctaagcttatatatatgttgcttatgttatcct 5767985  T
Q  478 tctcatttcttcttccatttca 499  Q
    | ||||||||||||||||||||    
T  5767984 tttcatttcttcttccatttca 5767963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 44699733 - 44699796
Alignment:
Q  19 agatagatcgatcaacgtttcaaaagggttgatggaccaacaatataatttgaacccacgcctc 82  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  44699733 agattgatcgatcaacgtttcaaaagggttgatggatcaacaatataatttgaacccacgcctc 44699796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 552 - 604
Target Start/End: Complemental strand, 47932858 - 47932806
Alignment:
Q  552 tctataattttttgtattctctaatggatattttttctttcatttcacataca 604  Q
    ||||||||||||||| |||||||||| ||||  ||||||| ||||||||||||    
T  47932858 tctataattttttgttttctctaatgaatatcctttctttgatttcacataca 47932806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 444
Target Start/End: Complemental strand, 39066890 - 39066825
Alignment:
Q  382 ttattcatattcttagtcaatcatcttacacacaaaagt---ttactataaagctcctcatttttt 444  Q
    ||||||||||||||| |||||| ||||||||| | ||||   ||||||||| ||||||||||||||    
T  39066890 ttattcatattcttaatcaatcctcttacacatacaagtttattactataaggctcctcatttttt 39066825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 388 - 442
Target Start/End: Complemental strand, 47932974 - 47932920
Alignment:
Q  388 atattcttagtcaatcatcttacacacaaaagtttactataaagctcctcatttt 442  Q
    ||||| ||| || ||| ||||||||||| |||||||||| |||||||||||||||    
T  47932974 atatttttattctatcctcttacacacacaagtttactacaaagctcctcatttt 47932920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 17026576 - 17026620
Alignment:
Q  109 acatgtattctaaactacattttacttatgtgtcacttcaccaat 153  Q
    ||||||||||||| ||||| ||| |||||||||||| ||||||||    
T  17026576 acatgtattctaagctacactttgcttatgtgtcacctcaccaat 17026620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 39073363 - 39073319
Alignment:
Q  109 acatgtattctaaactacattttacttatgtgtcacttcaccaat 153  Q
    ||||||||||||| ||||| ||| |||||||||||| ||||||||    
T  39073363 acatgtattctaacctacactttgcttatgtgtcacctcaccaat 39073319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 114 - 154
Target Start/End: Original strand, 47140378 - 47140418
Alignment:
Q  114 tattctaaactacattttacttatgtgtcacttcaccaatg 154  Q
    |||||||||||||| ||| |||||||||||| |||||||||    
T  47140378 tattctaaactacactttgcttatgtgtcacctcaccaatg 47140418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516 (Bit Score: 173; Significance: 1e-92; HSPs: 2)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 111 - 367
Target Start/End: Original strand, 3127 - 3382
Alignment:
Q  111 atgtattctaaactacattttacttatgtgtcacttcaccaatgtttcccttttgtaactaatctctcatacttatgccatgtggctctcttttgttctt 210  Q
    ||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  3127 atgtattttaaactacattttacttatgtgtcacttcaccaacgtctcccttttgtaactaatctctcatacttatgtcatgtggctctcttttgttctt 3226  T
Q  211 gattctttactagccattccttactatctaatctttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaatgaatgt 310  Q
    ||||||||||||||||||| ||||||| | ||||||||||| |||||| ||| |||||| || |||||||||||||||||| ||||| |||||||| ||     
T  3227 gattctttactagccattctttactat-ttatctttcatttcccatcagttgcaaaaacacttcatttacttcacttcatgcaagttgcacaatgattga 3325  T
Q  311 gttataatccattttattaatagtgaggggttacattttaaaattattcatattctt 367  Q
     ||||||||||||||||||||| | || |||||||||||||||||||||||||||||    
T  3326 attataatccattttattaatattaagcggttacattttaaaattattcatattctt 3382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 382 - 599
Target Start/End: Original strand, 3369 - 3572
Alignment:
Q  382 ttattcatattcttagtcaatcatcttacacacaaaagtttactataaagctcctcattttttctaagctcatatatatgttgcttatgttatccttctc 481  Q
    ||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||               |||||||||||||| |||||| |     
T  3369 ttattcatattcttaatcaatcctcttacacacacaagtttactataaagctcctcatttt---------------tatgttgcttatgtcatcctttta 3453  T
Q  482 atttcttcttccatttcannnnnnnnatggttttgattctctcttcaagcttcgtgagtgtgtgtttcta--tctataattttttgtattctctaatgga 579  Q
    ||||||||||||||||||        ||  ||||| || |||||||| |||| ||| |||||||||||||  ||||| |||||||||||||| |||||||    
T  3454 atttcttcttccatttca-ttttttgataattttgtttttctcttcaggctttgtgtgtgtgtgtttctatttctattattttttgtattctttaatgga 3552  T
Q  580 tattttttctttcatttcac 599  Q
    |||||||||||| |||||||    
T  3553 tattttttctttgatttcac 3572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 158; Significance: 9e-84; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 109 - 367
Target Start/End: Complemental strand, 41646969 - 41646715
Alignment:
Q  109 acatgtattctaaactacattttacttatgtgtcacttcaccaatgtttcccttttgtaactaatctctcatacttatgccatgtggctctcttttgttc 208  Q
    ||||||||| ||| ||||||||| | |||||||||| | ||||||||  ||| ||| |||||||||||||||||||||||||||||||| ||||||||||    
T  41646969 acatgtattataagctacatttttcctatgtgtcaccttaccaatgtcccccctttttaactaatctctcatacttatgccatgtggctatcttttgttc 41646870  T
Q  209 ttgattctttactagccattccttactatctaatctttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaatgaat 308  Q
    |||||||||||||||||||||||||||     |||||||||||||||||  ||| |||||| |||||||||||||| |||||| ||||||||||||||||    
T  41646869 ttgattctttactagccattccttactt----atctttcattttccatcggttgcaaaaacactccatttacttcatttcatgcaagttacacaatgaat 41646774  T
Q  309 gtgttataatccattttattaatagtgaggggttacattttaaaattattcatattctt 367  Q
    || || |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  41646773 gtattttaatccattttattaatattgaggggttacattttaaaattattcatattctt 41646715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 382 - 610
Target Start/End: Complemental strand, 41646728 - 41646492
Alignment:
Q  382 ttattcatattcttagtcaatcatcttacacacaaaagttta---ctataaagctcctcatttttt--ctaagctcatatatatgttgcttatgttatcc 476  Q
    ||||||||||||||| |||||| ||||||||||| |||||||   |||||||||||||||||||||  ||||||| |||||||||||||||||||| |||    
T  41646728 ttattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcattttttttctaagcttatatatatgttgcttatgttgtcc 41646629  T
Q  477 ttctcatttcttcttccatttcannnnnnnnatggttttgattctctcttcaagctt--cgtgagtgtgtgtttcta--tctataattttttgtattctc 572  Q
    || ||||||||||||||||||||        || ||||||||| |||||||||||||   ||| |||||||||||||  |||||||||||| ||||| ||    
T  41646628 ttttcatttcttcttccatttca-ttttttgatagttttgattttctcttcaagctttgtgtgtgtgtgtgtttctatttctataatttttcgtattttc 41646530  T
Q  573 taatggatattttttctttcatttcacatacacaggtt 610  Q
    ||||||||||||||||||| |||||| |||||||||||    
T  41646529 taatggatattttttctttgatttcaaatacacaggtt 41646492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 231 - 367
Target Start/End: Complemental strand, 7574233 - 7574098
Alignment:
Q  231 ttactatctaatctttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaatgaatgtgttataatccattttattaa 330  Q
    |||||||||| ||||||||||||||||| ||  |||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||    
T  7574233 ttactatcta-tctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaa 7574135  T
Q  331 tagtgaggggttacattttaaaattattcatattctt 367  Q
    || ||||||||||||||||||||||||||||||||||    
T  7574134 tattgaggggttacattttaaaattattcatattctt 7574098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 231 - 367
Target Start/End: Complemental strand, 16668828 - 16668693
Alignment:
Q  231 ttactatctaatctttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaatgaatgtgttataatccattttattaa 330  Q
    |||||||||| ||||||||||||||||| ||  |||||||||||||||||||||||||||| |||||||| ||||||||  |||||||||||||||||||    
T  16668828 ttactatcta-tctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacataatgaatgcattataatccattttattaa 16668730  T
Q  331 tagtgaggggttacattttaaaattattcatattctt 367  Q
    || ||||||||||||||||||||||||||||||||||    
T  16668729 tattgaggggttacattttaaaattattcatattctt 16668693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 382 - 610
Target Start/End: Complemental strand, 7574111 - 7573870
Alignment:
Q  382 ttattcatattcttagtcaatcatcttacacacaaaagttta---ctataaagctcctcatttttt-ctaagctcatatatatgttgcttatgttatcct 477  Q
    ||||||||||||||| |||||| ||||||||||| || ||||   ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  7574111 ttattcatattcttaatcaatcctcttacacacacaaatttattactataaagctcctcatttttttctaagcttatatatatgttgcttatgttatcct 7574012  T
Q  478 tctcatttcttcttccatttcannnnnnnnatggttttgattctctcttcaagctt--------cgtgagtgtgtgtt--tctatctataattttttgta 567  Q
    | ||||||||||||||||||||        || ||||||||| |||||||||||||         ||| |||||||||  | | |||||||||||| |||    
T  7574011 tttcatttcttcttccatttca-ttttttgatagttttgattttctcttcaagctttatgtgtgtgtgtgtgtgtgttaatatttctataatttttcgta 7573913  T
Q  568 ttctctaatggatattttttctttcatttcacatacacaggtt 610  Q
    |||||||||||||||||||||||| |||||| |||||||||||    
T  7573912 ttctctaatggatattttttctttgatttcaaatacacaggtt 7573870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 382 - 610
Target Start/End: Complemental strand, 16668706 - 16668465
Alignment:
Q  382 ttattcatattcttagtcaatcatcttacacacaaaagttta---ctataaagctcctcatttttt-ctaagctcatatatatgttgcttatgttatcct 477  Q
    ||||||||||||||  |||||| ||||||||||| || ||||   ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  16668706 ttattcatattcttgatcaatcctcttacacacacaaatttattactataaagctcctcatttttttctaagcttatatatatgttgcttatgttatcct 16668607  T
Q  478 tctcatttcttcttccatttcannnnnnnnatggttttgattctctcttcaagctt--------cgtgagtgtgtgtt--tctatctataattttttgta 567  Q
    | ||||||||||||||||||||        || ||||||||| |||||||||||||         ||| |||||||||  | | |||||||||||| |||    
T  16668606 tttcatttcttcttccatttca-ttttttgatagttttgattttctcttcaagctttatgtgtgtgtgtgtgtgtgttaatatttctataatttttcgta 16668508  T
Q  568 ttctctaatggatattttttctttcatttcacatacacaggtt 610  Q
    |||||||||||||||||||||||| |||||| |||||||||||    
T  16668507 ttctctaatggatattttttctttgatttcaaatacacaggtt 16668465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 439 - 606
Target Start/End: Original strand, 43564311 - 43564478
Alignment:
Q  439 ttttttctaagctcatatatatgttgcttatgttatccttctcatttcttcttccatttcannnnnnnnatggttttgattctctcttcaagcttcgtga 538  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||        || ||||||||| ||||||||||||| |||     
T  43564311 ttttttctaagcttatatatatgttgcttatgttatccttttcatttcttcttccatttcatttttcg-atagttttgattttctcttcaagctttgtgt 43564409  T
Q  539 gtgtgtgtttctat--ctataattttttgtattctctaatggatattttttctttcatttcacatacaca 606  Q
    ||||||||||||||  ||||||||||| ||||||||||||||||||||||| ||| |||||| |||||||    
T  43564410 gtgtgtgtttctatttctataatttttcgtattctctaatggatattttttattt-atttcaaatacaca 43564478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 312 - 367
Target Start/End: Original strand, 43564239 - 43564294
Alignment:
Q  312 ttataatccattttattaatagtgaggggttacattttaaaattattcatattctt 367  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  43564239 ttataatccattttattaatattgaggggttacattttaaaattattcatattctt 43564294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 312 - 367
Target Start/End: Original strand, 29455449 - 29455504
Alignment:
Q  312 ttataatccattttattaatagtgaggggttacattttaaaattattcatattctt 367  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  29455449 ttataatccattttattaatatcgaggggttacattttaaaattattcatattctt 29455504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 511 - 587
Target Start/End: Original strand, 29455575 - 29455653
Alignment:
Q  511 gttttgattctctcttcaagcttcgtgagtgtgtgtttctat--ctataattttttgtattctctaatggatatttttt 587  Q
    ||||||||| ||||||||||||| ||| ||||| ||||||||  ||||||||||| ||||||||||||||||| |||||    
T  29455575 gttttgattttctcttcaagctttgtgtgtgtgcgtttctatttctataatttttcgtattctctaatggataattttt 29455653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 439 - 478
Target Start/End: Original strand, 29455521 - 29455560
Alignment:
Q  439 ttttttctaagctcatatatatgttgcttatgttatcctt 478  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  29455521 ttttttctaagcttatatatatgttgcttatgttatcctt 29455560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 111 - 153
Target Start/End: Original strand, 29455086 - 29455128
Alignment:
Q  111 atgtattctaaactacattttacttatgtgtcacttcaccaat 153  Q
    ||||||||||| ||||||||| | |||||||||||||||||||    
T  29455086 atgtattctaagctacatttttcctatgtgtcacttcaccaat 29455128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 154
Target Start/End: Complemental strand, 37904138 - 37904093
Alignment:
Q  109 acatgtattctaaactacattttacttatgtgtcacttcaccaatg 154  Q
    ||||||||||||| ||||||||| | |||||||||| |||||||||    
T  37904138 acatgtattctaagctacatttttcctatgtgtcacctcaccaatg 37904093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 6414395 - 6414355
Alignment:
Q  109 acatgtattctaaactacattttacttatgtgtcacttcac 149  Q
    ||||||||||||||||||| ||| |||||||||||| ||||    
T  6414395 acatgtattctaaactacactttgcttatgtgtcacctcac 6414355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 22990072 - 22990028
Alignment:
Q  109 acatgtattctaaactacattttacttatgtgtcacttcaccaat 153  Q
    |||||||||||||  |||||||| |||||||||||| ||||||||    
T  22990072 acatgtattctaacgtacattttgcttatgtgtcacctcaccaat 22990028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 114 - 154
Target Start/End: Original strand, 29752926 - 29752966
Alignment:
Q  114 tattctaaactacattttacttatgtgtcacttcaccaatg 154  Q
    |||||||||||||| ||| |||||||||||| |||||||||    
T  29752926 tattctaaactacactttgcttatgtgtcacctcaccaatg 29752966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 151; Significance: 1e-79; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 109 - 367
Target Start/End: Complemental strand, 37302251 - 37301995
Alignment:
Q  109 acatgtattctaaactacattttacttatgtgtcacttcaccaatgtttcccttttgtaactaatctctcatacttatgccatgtggctctcttttgttc 208  Q
    ||||||||||||| ||||||||| | |||||||||| | |||||||  | |||||  |||||||||||| ||||||||||||||||| ||||||||||||    
T  37302251 acatgtattctaacctacattttgcatatgtgtcaccttaccaatgacttcctttc-taactaatctcttatacttatgccatgtggatctcttttgttc 37302153  T
Q  209 ttgattctttactagccattccttactatctaatctttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaatgaat 308  Q
    |||||||||||||||||||||| ||| ||||| |||||||||| |||||| ||| |||||| ||||||||||||||||||||| ||||||||||||||||    
T  37302152 ttgattctttactagccattccgtacaatcta-tctttcatttcccatcatttgcaaaaacactccatttacttcacttcatgcaagttacacaatgaat 37302054  T
Q  309 gtgttataatccattttattaatagtgaggggttacattttaaaattattcatattctt 367  Q
    |  ||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||    
T  37302053 gcattataatccattttattaataatggagggttacattttaaaattattcatattctt 37301995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 114 - 367
Target Start/End: Complemental strand, 21605324 - 21605074
Alignment:
Q  114 tattctaaactacattttacttatgtgtcacttcaccaatgtttcccttttgtaactaatctctcatacttatgccatgtggctctcttttgttcttgat 213  Q
    |||||||| ||||||||| | |||||||||| | ||||||    ||| ||| |||||||||||||||||||||| ||||||||| |||||||||||||||    
T  21605324 tattctaagctacatttttcctatgtgtcaccttaccaatac--cccctttctaactaatctctcatacttatgtcatgtggctatcttttgttcttgat 21605227  T
Q  214 tctttactagccattccttactatctaatctttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaatgaatgtgtt 313  Q
    |||||| ||| |||||||||||||||| |||||||||||||||    || |||||| || |||||||||||||||||| |||||||||||||||||  ||    
T  21605226 tctttattagtcattccttactatcta-tctttcattttccattggctgcaaaaacacttcatttacttcacttcatgcaagttacacaatgaatgcatt 21605128  T
Q  314 ataatccattttattaatagtgaggggttacattttaaaattattcatattctt 367  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  21605127 ataatccattttattaatattgaggggttaaattttaaaattattcatattctt 21605074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 382 - 610
Target Start/End: Complemental strand, 21605087 - 21604856
Alignment:
Q  382 ttattcatattcttagtcaatcatcttacacacaaaagttta---ctataaagctcctcatttttt-ctaagctcatatatatgttgcttatgttatcct 477  Q
    ||||||||||||||| |||||| ||||||||||| |||||||   ||||||||||||||||||||| |||||||  ||||||||||||||||||||||||    
T  21605087 ttattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcatttttttctaagct--tatatatgttgcttatgttatcct 21604990  T
Q  478 tctcatttcttcttccatttcannnnnnnnatggttttgattctctcttcaagcttcgtgagtgtgtgtttcta--tctataattttttgtattctctaa 575  Q
    | ||||||||||||||||||||        || ||||||||| ||| || |||||| ||  |||||||||||||  |||||||||||| |||||||||||    
T  21604989 tttcatttcttcttccatttca-ttttttgatagttttgattttctttttaagctttgtttgtgtgtgtttctatttctataatttttcgtattctctaa 21604891  T
Q  576 tggatattttttctttcatttcacatacacaggtt 610  Q
    |||||||||||||||| |||||| |||||||||||    
T  21604890 tggatattttttctttgatttcaaatacacaggtt 21604856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 382 - 610
Target Start/End: Original strand, 36991165 - 36991404
Alignment:
Q  382 ttattcatattcttagtcaatcatcttacacacaaaagttta---ctataaagctcctcatttt-ttctaagctcatatatatgttgcttatgttatcct 477  Q
    ||||||||||||||| |||||| ||||||||||| |||||||   ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  36991165 ttattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcatttttttctaagcttatatatatgttgcttatgttatcct 36991264  T
Q  478 tctcatttcttcttccatttcannnnnnnnatggttttgattctctcttcaagctt------cgtgagtgtgtgtttcta--tctataattttttgtatt 569  Q
    | ||||||||||||||||||||        || ||||||||| |||||| ||||||       ||| |||||||||||||  ||||||||||||||||||    
T  36991265 tttcatttcttcttccatttca-ttttttgatagttttgattttctctttaagctttgtgtgtgtgtgtgtgtgtttctatttctataattttttgtatt 36991363  T
Q  570 ctctaatggatattttttctttcatttcacatacacaggtt 610  Q
    ||||||| |||||||||||||| |||||| |||||||||||    
T  36991364 ctctaatagatattttttctttgatttcaaatacacaggtt 36991404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 231 - 367
Target Start/End: Original strand, 36991043 - 36991178
Alignment:
Q  231 ttactatctaatctttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaatgaatgtgttataatccattttattaa 330  Q
    |||||||||| ||||||||||||||||| ||  |||||||||||||||||||||||||||| |||||||||||||||||  |||||||| ||||||||||    
T  36991043 ttactatcta-tctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatctattttattaa 36991141  T
Q  331 tagtgaggggttacattttaaaattattcatattctt 367  Q
    || ||||||||||||||||||||||||||||||||||    
T  36991142 tattgaggggttacattttaaaattattcatattctt 36991178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 453 - 610
Target Start/End: Complemental strand, 37301852 - 37301690
Alignment:
Q  453 atatatatgttgcttatgttatccttctcatttcttcttccatttcannnnnnnnatggttttgattctctcttcaagcttcgtgagtgtgtgt----tt 548  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||        || ||||||||| ||||||||||||| ||| ||||||||    ||    
T  37301852 atatatatgttgcttatgttatccttttcatttcttcttccatttcattttttg-atagttttgattttctcttcaagctttgtgtgtgtgtgtgtgttt 37301754  T
Q  549 ctat--ctataattttttgtattctctaatggatattttttctttcatttcacatacacaggtt 610  Q
    ||||  ||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||    
T  37301753 ctatttctataatttttcgtattctctaatggatattttttctttgatttcaaatacacaggtt 37301690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 382 - 460
Target Start/End: Complemental strand, 37302008 - 37301929
Alignment:
Q  382 ttattcatattcttagtcaatcatcttacacacaaaagtttactataaagctcctcatt-ttttctaagctcatatatat 460  Q
    ||||||||||||||| ||||||  |||||||||| |||||||||||||| ||||||||| ||||||||||| ||||||||    
T  37302008 ttattcatattcttaatcaatccacttacacacacaagtttactataaaactcctcatttttttctaagcttatatatat 37301929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 109 - 201
Target Start/End: Original strand, 11386777 - 11386869
Alignment:
Q  109 acatgtattctaaactacattttacttatgtgtcacttcaccaatgtttcccttttgtaactaatctctcatacttatgccatgtggctctct 201  Q
    ||||||||||||| ||||||||| ||||  |||||| |||||||   |  || |||||||| |||||||||||||||||||||||||||||||    
T  11386777 acatgtattctaagctacattttccttacatgtcacctcaccaaaactctccctttgtaaccaatctctcatacttatgccatgtggctctct 11386869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 163
Target Start/End: Original strand, 10180445 - 10180499
Alignment:
Q  109 acatgtattctaaactacattttacttatgtgtcacttcaccaatgtttcccttt 163  Q
    ||||||||||||| ||||||||| |||||||||||| |||||||||  |||||||    
T  10180445 acatgtattctaacctacattttgcttatgtgtcacctcaccaatgcctcccttt 10180499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 125; Significance: 4e-64; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 119 - 367
Target Start/End: Complemental strand, 23726278 - 23726032
Alignment:
Q  119 taaactacattttacttatgtgtcacttcaccaatgtttcccttttgtaactaatctctcatacttatgccatgtggctctcttttgttcttgattcttt 218  Q
    |||| ||||||||  ||||||||||||||||||  || |||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||    
T  23726278 taaattacattttgtttatgtgtcacttcaccagcgtctcccttttgtaactaatctctcatacttatgttatatggctctcttttgttcttgattcttt 23726179  T
Q  219 actagccattccttactatctaatctttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaatgaatgtgttataat 318  Q
    ||| | ||||| ||||||||| |||||||||||| ||||  ||| |||||| || ||||||||||| |||||| ||||| |||||||||||  |||||||    
T  23726178 actggtcattctttactatct-atctttcatttttcatctgttgcaaaaacacttcatttacttcatttcatgcaagttgcacaatgaatgaattataat 23726080  T
Q  319 ccattttattaatagtgaggggttacattttaaaattattcatattctt 367  Q
    |||||||||||||| | |  ||||||||||| |||||||||||||||||    
T  23726079 ccattttattaatattaaacggttacatttt-aaattattcatattctt 23726032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 166 - 367
Target Start/End: Complemental strand, 22912735 - 22912535
Alignment:
Q  166 taactaatctctcatacttatgccatgtggctctcttttgttcttgattctttactagccattccttactatctaatctttcattttccatca-attgga 264  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||| ||||||  ||| |    
T  22912735 taactaatctctcatacttatgccatgtggctctcttttgttcttgattctttactagccattccttattat-ttatctttcatttcccatcaggttgca 22912637  T
Q  265 aaaactctccatttacttcacttcatggaagttacacaatgaatgtgttataatccattttattaatagtgaggggttacattttaaaattattcatatt 364  Q
     |||| |||||||||||||||||| || | |||||| ||||||||  |||||| |||||||||||||| ||||| |||||||||||||||||||||||||    
T  22912636 gaaacactccatttacttcacttcttgcatgttacaaaatgaatgcattataaaccattttattaata-tgaggagttacattttaaaattattcatatt 22912538  T
Q  365 ctt 367  Q
    |||    
T  22912537 ctt 22912535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 231 - 367
Target Start/End: Original strand, 13786229 - 13786364
Alignment:
Q  231 ttactatctaatctttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaatgaatgtgttataatccattttattaa 330  Q
    |||||||||| ||||||||||||||||| ||  |||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||    
T  13786229 ttactatcta-tctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaa 13786327  T
Q  331 tagtgaggggttacattttaaaattattcatattctt 367  Q
    || ||||||||||||||||||||||||||||||||||    
T  13786328 tattgaggggttacattttaaaattattcatattctt 13786364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 231 - 367
Target Start/End: Complemental strand, 25807914 - 25807779
Alignment:
Q  231 ttactatctaatctttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaatgaatgtgttataatccattttattaa 330  Q
    |||||||||| ||||||||||||||||||||  ||||||| |||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||    
T  25807914 ttactatcta-tctttcattttccatcaattacaaaaactttccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaa 25807816  T
Q  331 tagtgaggggttacattttaaaattattcatattctt 367  Q
    || ||||||||||||||||||||||||||||||||||    
T  25807815 tattgaggggttacattttaaaattattcatattctt 25807779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 382 - 587
Target Start/End: Complemental strand, 22912548 - 22912341
Alignment:
Q  382 ttattcatattcttagtcaatcatcttacacacaaaagtttactataaagctcctcatttttt-ctaagctcatatatatgttgcttatgttatccttct 480  Q
    ||||||||||||||| |||||| |||||||||||  | |||||||| |||||||||||||||| ||||||| |||||||||||||||||||||| ||| |    
T  22912548 ttattcatattcttaatcaatcctcttacacacacgaatttactattaagctcctcatttttttctaagcttatatatatgttgcttatgttattctttt 22912449  T
Q  481 catttcttcttccatttcannnnnnnnatggttttgattctctcttcaagcttcgtgagtgtgtgtttcta--tctataattttttgtattctctaatgg 578  Q
    ||||||||||||||||| |        || ||||||||| ||||||||||||| ||| || ||||||||||  |||||||||||| ||||||||||||||    
T  22912448 catttcttcttccatttta-ttttttgatagttttgattttctcttcaagctttgtgtgtctgtgtttctatttctataatttttcgtattctctaatgg 22912350  T
Q  579 atatttttt 587  Q
    |||||||||    
T  22912349 atatttttt 22912341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 382 - 610
Target Start/End: Original strand, 13786351 - 13786592
Alignment:
Q  382 ttattcatattcttagtcaatcatcttacacacaaaagttta---ctataaagctcctcatttt-ttctaagctcatatatatgttgcttatgttatcct 477  Q
    ||||||||||||||| |||||| ||||||||||| || ||||   ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  13786351 ttattcatattcttaatcaatcctcttacacacacaaatttattactataaagctcctcatttttttctaagcttatatatatgttgcttatgttatcct 13786450  T
Q  478 tctcatttcttcttccatttcannnnnnnnatggttttgattctctcttcaagctt--------cgtgagtgtgtgtt--tctatctataattttttgta 567  Q
    | ||||||||||||||||||||        || ||||||||| |||||||||||||         ||| |||||||||  | | |||||||||||| |||    
T  13786451 tttcatttcttcttccatttca-ttttttgatagttttgattttctcttcaagctttatgtgtgtgtgtgtgtgtgttaatatttctataatttttcgta 13786549  T
Q  568 ttctctaatggatattttttctttcatttcacatacacaggtt 610  Q
    |||||||||||||||||||||||| |||||| |||||||||||    
T  13786550 ttctctaatggatattttttctttgatttcaaatacacaggtt 13786592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 382 - 610
Target Start/End: Complemental strand, 25807792 - 25807550
Alignment:
Q  382 ttattcatattcttagtcaatcatcttacacacaaaagttta---ctataaagctcctcatttttt--ctaagctcatatatatgttgcttatgttatcc 476  Q
    ||||||||||||||| |||||| ||||||||||| |||||||   |||||||||||||||||||||  ||||||| ||||||||||| ||||||||||||    
T  25807792 ttattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcattttttttctaagcttatatatatgtttcttatgttatcc 25807693  T
Q  477 ttctcatttcttcttccatttcannnnnnnnatggttttgattctctcttcaagctt--------cgtgagtgtgtgtt--tctatctataattttttgt 566  Q
    || ||||||||||||||||||||        || ||||||||| |||||||||||||         ||| |||||||||  | | |||||||||||| ||    
T  25807692 ttttcatttcttcttccatttca-ttttttgatagttttgattttctcttcaagctttatgtgtgtgtgtgtgtgtgttaatatttctataatttttcgt 25807594  T
Q  567 attctctaatggatattttttctttcatttcacatacacaggtt 610  Q
    ||||||||||||||||||||||||| |||||| |||||||||||    
T  25807593 attctctaatggatattttttctttgatttcaaatacacaggtt 25807550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 382 - 599
Target Start/End: Complemental strand, 23726045 - 23725842
Alignment:
Q  382 ttattcatattcttagtcaatcatcttacacacaaaagtttactataaagctcctcattttttctaagctcatatatatgttgcttatgttatccttctc 481  Q
    ||||||||||||||| |||||| |||| |||||||  |||||||||||||||||||||||||               ||||| ||||||| |||||| ||    
T  23726045 ttattcatattcttaatcaatcctcttgcacacaa--gtttactataaagctcctcattttt---------------atgtttcttatgtcatccttttc 23725963  T
Q  482 atttcttcttccatttcannnnnnnnatggttttgattctctcttcaagcttcgt--gagtgtgtgtttctat--ctataattttttgtattctctaatg 577  Q
    ||||||||||||||||||        ||  |||||||| | ||||||||||||||  | ||||||||||||||  |||||||||||||||||||||||||    
T  23725962 atttcttcttccatttcattttttt-attattttgattttttcttcaagcttcgtttgtgtgtgtgtttctatttctataattttttgtattctctaatg 23725864  T
Q  578 gatattttttctttcatttcac 599  Q
    |||||||||||||| |||||||    
T  23725863 gatattttttctttgatttcac 23725842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 453 - 587
Target Start/End: Original strand, 39623649 - 39623783
Alignment:
Q  453 atatatatgttgcttatgttatccttctcatttcttcttccatttcannnnnnnnatggttttgattctctcttcaagcttcgtgagtgtgtgtttctat 552  Q
    |||||||| |||||||| |||||||| ||||||||||||||||||||        || ||||||||| ||| ||||||||||||| |||||| | | | |    
T  39623649 atatatatattgcttattttatccttttcatttcttcttccatttcatttttttgatagttttgattttctgttcaagcttcgtgtgtgtgtttctattt 39623748  T
Q  553 ctataattttttgtattctctaatggatatttttt 587  Q
    ||||||||||  |||||||| ||| ||||||||||    
T  39623749 ctataattttccgtattctcgaatagatatttttt 39623783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 39621652 - 39621696
Alignment:
Q  109 acatgtattctaaactacattttacttatgtgtcacttcaccaat 153  Q
    ||||||||||||||||||| ||| |||||||||||| ||||||||    
T  39621652 acatgtattctaaactacactttgcttatgtgtcacctcaccaat 39621696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 23727886 - 23727848
Alignment:
Q  166 taactaatctctcatacttatgccatgtggctctctttt 204  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  23727886 taaccaatctctcatacttatgccaagtggctctctttt 23727848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 150
Target Start/End: Original strand, 29679055 - 29679096
Alignment:
Q  109 acatgtattctaaactacattttacttatgtgtcacttcacc 150  Q
    ||||||||||||||||||| ||| |||||||||||| |||||    
T  29679055 acatgtattctaaactacactttgcttatgtgtcacctcacc 29679096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 111; Significance: 1e-55; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 382 - 605
Target Start/End: Complemental strand, 16712129 - 16711903
Alignment:
Q  382 ttattcatattcttagtcaatcatcttacacacaaaagtttactataaagctcctcatttttt-ctaagctcatatatatgttgcttatgttatccttct 480  Q
    ||||||||||||||| ||||||||||||||||||   ||| || ||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |    
T  16712129 ttattcatattcttaatcaatcatcttacacacac--gttcaccataaaactcctcatttttttctaagctcatatatatgttgcttatgttatcctttt 16712032  T
Q  481 catttcttcttccatttcannnnnnnn-----atggttttgattctctcttcaagcttcgtgagtgtgtgtttctatctataattttttgtattctctaa 575  Q
    |||| |||||||||||||              || ||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||| ||    
T  16712031 catt-cttcttccatttcttctttttgggttgatagttttgattttctcatcaagcttcgtgagtgtgtgtttctatctataatttttcgtattctcaaa 16711933  T
Q  576 tggatattttttctttcatttcacatacac 605  Q
    ||||||||||||||||||||||||||||||    
T  16711932 tggatattttttctttcatttcacatacac 16711903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 231 - 367
Target Start/End: Complemental strand, 13433595 - 13433460
Alignment:
Q  231 ttactatctaatctttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaatgaatgtgttataatccattttattaa 330  Q
    |||||||||| ||||||||||||||||| ||  |||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||    
T  13433595 ttactatcta-tctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaa 13433497  T
Q  331 tagtgaggggttacattttaaaattattcatattctt 367  Q
    || ||||||||||||||||||||||||||||||||||    
T  13433496 tattgaggggttacattttaaaattattcatattctt 13433460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 382 - 610
Target Start/End: Complemental strand, 13433473 - 13433232
Alignment:
Q  382 ttattcatattcttagtcaatcatcttacacacaaaagttta---ctataaagctcctcatttttt-ctaagctcatatatatgttgcttatgttatcct 477  Q
    ||||||||||||||| |||||| ||||||||||| || ||||   ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  13433473 ttattcatattcttaatcaatcctcttacacacacaaatttattactataaagctcctcatttttttctaagcttatatatatgttgcttatgttatcct 13433374  T
Q  478 tctcatttcttcttccatttcannnnnnnnatggttttgattctctcttcaagctt--------cgtgagtgtgtgtt--tctatctataattttttgta 567  Q
    | ||||||||||||||||||||        || ||||||||| |||||||||||||         ||| |||||||||  | | |||||||||||| |||    
T  13433373 tttcatttcttcttccatttca-ttttttgatagttttgattttctcttcaagctttatgtgtgtgtgtgtgtgtgttaatatttctataatttttcgta 13433275  T
Q  568 ttctctaatggatattttttctttcatttcacatacacaggtt 610  Q
    |||||||||||||||||||||||| |||||| |||||||||||    
T  13433274 ttctctaatggatattttttctttgatttcaaatacacaggtt 13433232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 453 - 610
Target Start/End: Original strand, 18882820 - 18882976
Alignment:
Q  453 atatatatgttgcttatgttatccttctcatttcttcttccatttcannnnnnnnatggttttgattctctcttcaagcttcgtgagtgtgtgtttcta- 551  Q
    |||||||| |||||||| |||||||| ||||||||||||||||||||        || ||||||||| ||| ||||||||||    |||||||||||||     
T  18882820 atatatatattgcttattttatccttttcatttcttcttccatttcatttttttgatagttttgattttctgttcaagcttc----gtgtgtgtttctat 18882915  T
Q  552 -tctataattttttgtattctctaatggatatt-ttttctttcatttcacatacacaggtt 610  Q
     |||||||||||  |||||||| ||| |||||| |||||||| |||||| |||||| ||||    
T  18882916 ttctataattttccgtattctcgaatagatattcttttctttgatttcaaatacacgggtt 18882976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 328 - 367
Target Start/End: Complemental strand, 16712155 - 16712116
Alignment:
Q  328 taatagtgaggggttacattttaaaattattcatattctt 367  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  16712155 taatagtgaggggttacattttaaaattattcatattctt 16712116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 552 - 604
Target Start/End: Original strand, 16857407 - 16857459
Alignment:
Q  552 tctataattttttgtattctctaatggatattttttctttcatttcacataca 604  Q
    ||||||||||||||| |||||||||| ||||  ||||||| ||||||||||||    
T  16857407 tctataattttttgttttctctaatgaatatcctttctttgatttcacataca 16857459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 163
Target Start/End: Original strand, 16855932 - 16855981
Alignment:
Q  114 tattctaaactacattttacttatgtgtcacttcaccaatgtttcccttt 163  Q
    |||||||||||||||||| ||||  |||||||||||||||| | ||||||    
T  16855932 tattctaaactacattttgcttacatgtcacttcaccaatgatccccttt 16855981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 552 - 604
Target Start/End: Original strand, 10810392 - 10810444
Alignment:
Q  552 tctataattttttgtattctctaatggatattttttctttcatttcacataca 604  Q
    ||||||||||||||||||||||||||  |||  ||| ||| ||||||||||||    
T  10810392 tctataattttttgtattctctaatgagtatcctttatttgatttcacataca 10810444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 453 - 497
Target Start/End: Complemental strand, 26721073 - 26721029
Alignment:
Q  453 atatatatgttgcttatgttatccttctcatttcttcttccattt 497  Q
    |||||| ||||||||||||||||||| | |||||||||| |||||    
T  26721073 atatatttgttgcttatgttatccttttaatttcttctttcattt 26721029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 110 - 173
Target Start/End: Complemental strand, 46427 - 46366
Alignment:
Q  110 catgtattctaaactacattttacttatgtgtcacttcaccaatgtttcccttttgtaactaat 173  Q
    |||||||||||| ||||| |||||||||||||||| |||||||  |||||| ||| ||||||||    
T  46427 catgtattctaagctacactttacttatgtgtcacctcaccaa--tttcccctttctaactaat 46366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 110 - 173
Target Start/End: Original strand, 152360 - 152421
Alignment:
Q  110 catgtattctaaactacattttacttatgtgtcacttcaccaatgtttcccttttgtaactaat 173  Q
    |||||||||||| ||||| |||||||||||||||| |||||||  |||||| ||| ||||||||    
T  152360 catgtattctaagctacactttacttatgtgtcacctcaccaa--tttcccctttctaactaat 152421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 552 - 603
Target Start/End: Complemental strand, 8756 - 8705
Alignment:
Q  552 tctataattttttgtattctctaatggatattttttctttcatttcacatac 603  Q
    ||||||||||||||| |||||||||| ||||  ||||||| |||||||||||    
T  8756 tctataattttttgttttctctaatgaatatcctttctttgatttcacatac 8705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 109 - 163
Target Start/End: Complemental strand, 5538 - 5484
Alignment:
Q  109 acatgtattctaaactacattttacttatgtgtcacttcaccaatgtttcccttt 163  Q
    ||||||||||||| ||||||||| | |||||||||| | ||||||||| ||||||    
T  5538 acatgtattctaacctacatttttcctatgtgtcaccttaccaatgttccccttt 5484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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