View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1802_low_41 (Length: 251)
Name: NF1802_low_41
Description: NF1802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1802_low_41 |
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| [»] chr4 (6 HSPs) |
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| [»] scaffold0040 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 194 - 251
Target Start/End: Original strand, 5883478 - 5883535
Alignment:
| Q |
194 |
ctttaaaactttatatatcaacccaattatgttctaaattgtgaaggtctaactcagt |
251 |
Q |
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| T |
5883478 |
ctttaaaactttatatatcaacccaattatgttctaaattttgaaggtctaactcagt |
5883535 |
T |
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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 188 - 248
Target Start/End: Original strand, 5845399 - 5845462
Alignment:
| Q |
188 |
tagagcctttaaaactttatatatcaaccca---attatgttctaaattgtgaaggtctaactc |
248 |
Q |
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| T |
5845399 |
tagagcctttaaaactttatatatcaacccaattattatgttctacattttgaaggtctaactc |
5845462 |
T |
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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 5550995 - 5550958
Alignment:
| Q |
183 |
atatctagagcctttaaaactttatatatcaacccaat |
220 |
Q |
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|||| ||||||||||||||||||||||||||||||||| |
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| T |
5550995 |
atatatagagcctttaaaactttatatatcaacccaat |
5550958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 222
Target Start/End: Original strand, 5855423 - 5855457
Alignment:
| Q |
188 |
tagagcctttaaaactttatatatcaacccaatta |
222 |
Q |
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||||||||| ||||||||||||||||||||||||| |
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| T |
5855423 |
tagagccttcaaaactttatatatcaacccaatta |
5855457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 222
Target Start/End: Original strand, 5897418 - 5897452
Alignment:
| Q |
188 |
tagagcctttaaaactttatatatcaacccaatta |
222 |
Q |
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||||||||||||||| ||||||||||||||||||| |
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| T |
5897418 |
tagagcctttaaaacattatatatcaacccaatta |
5897452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 80
Target Start/End: Complemental strand, 41248312 - 41248282
Alignment:
| Q |
50 |
acttaagaatgagggtcttaagtgagactct |
80 |
Q |
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| T |
41248312 |
acttaagaatgagggtcttaagtgagactct |
41248282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 42401010 - 42400931
Alignment:
| Q |
22 |
attattttaataaaaggtagtgagt--ttcacttaagaatgagggtcttaagtgagactctcggtcttacaagaccccca |
99 |
Q |
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||||||||||||||| |||||| | | ||||||||||| ||||||||||||||||| || ||||||| |||||||||| |
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| T |
42401010 |
attattttaataaaaagtagtgtggggtccacttaagaataagggtcttaagtgagaccctgggtcttagaagaccccca |
42400931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 78
Target Start/End: Complemental strand, 32544928 - 32544899
Alignment:
| Q |
49 |
cacttaagaatgagggtcttaagtgagact |
78 |
Q |
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| T |
32544928 |
cacttaagaatgagggtcttaagtgagact |
32544899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 105
Target Start/End: Original strand, 9486967 - 9487022
Alignment:
| Q |
50 |
acttaagaatgagggtcttaagtgagactctcggtcttacaagacccccataattt |
105 |
Q |
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| T |
9486967 |
acttacgaatgagggtcttaagtgagaccctcggtcttagaagacctccaaaattt |
9487022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 49 - 99
Target Start/End: Complemental strand, 38223958 - 38223908
Alignment:
| Q |
49 |
cacttaagaatgagggtcttaagtgagactctcggtcttacaagaccccca |
99 |
Q |
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||||||||| |||| ||||||||||||||||| ||||||| |||||||||| |
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| T |
38223958 |
cacttaagattgagagtcttaagtgagactctgggtcttataagaccccca |
38223908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 77
Target Start/End: Original strand, 34975668 - 34975713
Alignment:
| Q |
32 |
taaaaggtagtgagtttcacttaagaatgagggtcttaagtgagac |
77 |
Q |
| |
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||||| || ||||| | ||||||||||||||||||||||||||||| |
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| T |
34975668 |
taaaaagtggtgagatccacttaagaatgagggtcttaagtgagac |
34975713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 77
Target Start/End: Complemental strand, 33202915 - 33202883
Alignment:
| Q |
45 |
gtttcacttaagaatgagggtcttaagtgagac |
77 |
Q |
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||||||||||||| ||||||||||||||||||| |
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| T |
33202915 |
gtttcacttaagattgagggtcttaagtgagac |
33202883 |
T |
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Target: scaffold0040 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 55907 - 55961
Alignment:
| Q |
41 |
gtgagtttcacttaagaatgagggtcttaagtgagactctcggtcttacaagacc |
95 |
Q |
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||||||| ||||||||||||||||||||||||||||| || |||| || |||||| |
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| T |
55907 |
gtgagttccacttaagaatgagggtcttaagtgagaccctgggtcctataagacc |
55961 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 94
Target Start/End: Original strand, 4942567 - 4942612
Alignment:
| Q |
49 |
cacttaagaatgagggtcttaagtgagactctcggtcttacaagac |
94 |
Q |
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|||||||||||||||||||||||||||||||| ||| ||| ||||| |
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| T |
4942567 |
cacttaagaatgagggtcttaagtgagactctgggtattaaaagac |
4942612 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 163
Target Start/End: Complemental strand, 45707528 - 45707482
Alignment:
| Q |
117 |
gtaccgggtcttaaatggtgtagacctcaacattgaagatggtctaa |
163 |
Q |
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||||||| |||||||||||| |||||||| |||||| |||||||||| |
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| T |
45707528 |
gtaccggatcttaaatggtgaagacctcaccattgaggatggtctaa |
45707482 |
T |
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