View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1802_low_42 (Length: 250)
Name: NF1802_low_42
Description: NF1802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1802_low_42 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 14 - 194
Target Start/End: Original strand, 34026011 - 34026191
Alignment:
| Q |
14 |
aaatgcaagttacgaacaagcaacccacctaactccctcatctaacaaaccttatctcaataaatcaaatgaattttttgagatccccttacaccgtccc |
113 |
Q |
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| T |
34026011 |
aaatgcaagttacgaacaagcaacccacctaactccctcatctaacaaaccttatctcaataaatcaaatgaattttttgagatccccttacaccctccc |
34026110 |
T |
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| Q |
114 |
cataaaacagatttaaaaagagactcaatttttagatggatccttaaagaaggaaaggaagcacattggtaacgaagataa |
194 |
Q |
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| T |
34026111 |
cataaaacagatttaaaaagagactcaattcttagatggagccttaaagaaggaaaggaagcacattggtaacgaagataa |
34026191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 34026220 - 34026275
Alignment:
| Q |
195 |
gcatggataaatcggggctctttcatcccgacaattttgctagaatcttttcaatc |
250 |
Q |
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| T |
34026220 |
gcatggataaattggggctctttcatcccgacaattttgctagaatcttatcaatc |
34026275 |
T |
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