View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1802_low_49 (Length: 226)
Name: NF1802_low_49
Description: NF1802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1802_low_49 |
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| [»] chr2 (10 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 158; Significance: 3e-84; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 34688823 - 34689031
Alignment:
| Q |
1 |
gtggaggttgatacatttggacagactttcaggattgaaacagttccctctaaaggcttatgtaagtccaatcattttgaatataaagactcacatgaat |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
34688823 |
gtggaggttgatacatttggacagactttcaggattgaaacagttccctgtaaa-----------------tcattttgaatataaagactcacatgaat |
34688905 |
T |
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| Q |
101 |
ttcagtcaatagtaaagaatttaaagtaaagattgttaatagcactagtcattccacggccactgttcgcggccgccacacctctttactttaaagaata |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34688906 |
ttcagtcaatagtaaagaatttaaagtaacgattgttaatagcactagtcattccacggccactgttcgcggccgccacacctctttactttaaagaata |
34689005 |
T |
|
| Q |
201 |
tatgttagcgttccaggactattgac |
226 |
Q |
| |
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||||||||| |||||||||||||||| |
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| T |
34689006 |
tatgttagcattccaggactattgac |
34689031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 34711235 - 34711443
Alignment:
| Q |
1 |
gtggaggttgatacatttggacagactttcaggattgaaacagttccctctaaaggcttatgtaagtccaatcattttgaatataaagactcacatgaat |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
34711235 |
gtggaggttgatacatttggacagactttcaggattgaaacagttccctgtaaa-----------------tcattttgaatataaagactcacatgaat |
34711317 |
T |
|
| Q |
101 |
ttcagtcaatagtaaagaatttaaagtaaagattgttaatagcactagtcattccacggccactgttcgcggccgccacacctctttactttaaagaata |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34711318 |
ttcagtcaatagtaaagaatttaaagtaacgattgttaatagcactagtcattccacggccactgttcgcggccgccacacctctttactttaaagaata |
34711417 |
T |
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| Q |
201 |
tatgttagcgttccaggactattgac |
226 |
Q |
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||||||||| |||||||||||||||| |
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| T |
34711418 |
tatgttagcattccaggactattgac |
34711443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 16231063 - 16231218
Alignment:
| Q |
1 |
gtggaggttgatacatttggacagactttcaggattgaaacagttccctctaaaggcttatgtaagtccaatcattttgaatataaagactcacatgaat |
100 |
Q |
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||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
16231063 |
gtggaggttgatacatttggacagattttcacgactgaaacagttccctctaaaggcttatgtaagttcaatcattttgaatataaagtctcacatgaat |
16231162 |
T |
|
| Q |
101 |
ttcagtcaatagtaaagaatttaaagtaaagattgttaatagcactagtcattcca |
156 |
Q |
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|||| |||| ||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
16231163 |
ttcaatcaacagtaaagaatttaaattaaagattgttaatagcactagtcattcca |
16231218 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 90 - 144
Target Start/End: Complemental strand, 35925339 - 35925285
Alignment:
| Q |
90 |
ctcacatgaatttcagtcaatagtaaagaatttaaagtaaagattgttaatagca |
144 |
Q |
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|||||| ||||||||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
35925339 |
ctcacaagaatttcagtcaatagtaaagaattcaaaataaagattgttaatagca |
35925285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 150
Target Start/End: Original strand, 34689781 - 34689833
Alignment:
| Q |
98 |
aatttcagtcaatagtaaagaatttaaagtaaagattgttaatagcactagtc |
150 |
Q |
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||||||||||||||||||| | | |||||| |||||||||||||||||||||| |
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| T |
34689781 |
aatttcagtcaatagtaaaaagtctaaagttaagattgttaatagcactagtc |
34689833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 150
Target Start/End: Original strand, 34712193 - 34712245
Alignment:
| Q |
98 |
aatttcagtcaatagtaaagaatttaaagtaaagattgttaatagcactagtc |
150 |
Q |
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||||||||||||||||||| | | |||||| |||||||||||||||||||||| |
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| T |
34712193 |
aatttcagtcaatagtaaaaagtctaaagttaagattgttaatagcactagtc |
34712245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 132
Target Start/End: Complemental strand, 34689084 - 34689053
Alignment:
| Q |
101 |
ttcagtcaatagtaaagaatttaaagtaaaga |
132 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
34689084 |
ttcagtcaatagtaaagaatttaaagtaaaga |
34689053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 132
Target Start/End: Complemental strand, 34711496 - 34711465
Alignment:
| Q |
101 |
ttcagtcaatagtaaagaatttaaagtaaaga |
132 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
34711496 |
ttcagtcaatagtaaagaatttaaagtaaaga |
34711465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 139
Target Start/End: Complemental strand, 34990350 - 34990309
Alignment:
| Q |
98 |
aatttcagtcaatagtaaagaatttaaagtaaagattgttaa |
139 |
Q |
| |
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|||||||||||||| ||||||| |||| |||||||||||||| |
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| T |
34990350 |
aatttcagtcaatattaaagaaattaatgtaaagattgttaa |
34990309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 118
Target Start/End: Complemental strand, 35891034 - 35890990
Alignment:
| Q |
73 |
cattttgaatataaagactcacatgaatttcagtcaatagtaaaga |
118 |
Q |
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|||||||||||||| | || |||||||||||||||||||||||||| |
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| T |
35891034 |
cattttgaatataa-gtctgacatgaatttcagtcaatagtaaaga |
35890990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 60
Target Start/End: Original strand, 4384183 - 4384237
Alignment:
| Q |
6 |
ggttgatacatttggacagactttcaggattgaaacagttccctctaaaggctta |
60 |
Q |
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|||| ||| |||||||||||||| ||||| ||||||| |||| |||||||||||| |
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| T |
4384183 |
ggttaatatatttggacagacttccaggactgaaacatttccgtctaaaggctta |
4384237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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