View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1802_low_50 (Length: 225)
Name: NF1802_low_50
Description: NF1802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1802_low_50 |
 | |
|
| [»] scaffold0425 (1 HSPs) |
| | |
|
| [»] scaffold0958 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 159; Significance: 8e-85; HSPs: 28)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 7587592 - 7587782
Alignment:
| Q |
18 |
aactcttcttcacttttgtctcttcggcaacatttcaacaaaccttctgccatccaaagcatgatcaattcatcttttttaaattcataacccttgggaa |
117 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
7587592 |
aactcttcttcacttttgtctcttccgcaacatttcagcaaaccttctgccatccaaagcttgatcaattcatctttttcaaatacataacccttgggaa |
7587691 |
T |
|
| Q |
118 |
atattgaacaataggcaaaacaacgctttagattggaagggagattatggtaactcaatctcaatactgagttaattccatcaccaccctt |
208 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7587692 |
atattgaacaaaaggcaaaacaacgctttagattggatgggagattatggtaactcaatctcaatactgagttaatttcatcaccaccctt |
7587782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 20 - 208
Target Start/End: Complemental strand, 8569255 - 8569067
Alignment:
| Q |
20 |
ctcttcttcacttttgtctcttcggcaacatttcaacaaaccttctgccatccaaagcatgatcaattcatcttttttaaattcataacccttgggaaat |
119 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
8569255 |
ctcttcttcacttttgtctcttttgcaacacttcaacaaaccttctgccatccaaagcttgatcaattcatctttttcaaattcataacccttgggaaaa |
8569156 |
T |
|
| Q |
120 |
attgaacaataggcaaaacaacgctttagattggaagggagattatggtaactcaatctcaatactgagttaattccatcaccaccctt |
208 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||| |
|
|
| T |
8569155 |
attgaacaataggcaaaacaacgcttgagattggaagggagattatggtaactcaatctcaatactgggttaatttcatcgtcaccctt |
8569067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 16 - 193
Target Start/End: Complemental strand, 6520476 - 6520299
Alignment:
| Q |
16 |
caaactcttcttcacttttgtctcttcggcaacatttcaacaaaccttctgccatccaaagcatgatcaattcatcttttttaaattcataacccttggg |
115 |
Q |
| |
|
|||| ||||||||||||||||| || | |||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
6520476 |
caaaatcttcttcacttttgtccaatccgtaacacttcaacaaaccttctgccatccaaagcttgatcaatttatcttttttaaatttataacccttggg |
6520377 |
T |
|
| Q |
116 |
aaatattgaacaataggcaaaacaacgctttagattggaagggagattatggtaactcaatctcaatactgagttaat |
193 |
Q |
| |
|
||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6520376 |
aaaaatagaacaatatgcaaaacaacgctttagattggaagggagattatggtaactcaatctcaatactgagttaat |
6520299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 16 - 192
Target Start/End: Original strand, 8454369 - 8454545
Alignment:
| Q |
16 |
caaactcttcttcacttttgtctcttcggcaacatttcaacaaaccttctgccatccaaagcatgatcaattcatcttttttaaattcataacccttggg |
115 |
Q |
| |
|
||||||||||||||||| ||| || |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||| |
|
|
| T |
8454369 |
caaactcttcttcacttctgttagatccgcaacacttcaacaaaccttctgccatccaaagcatgatcagttcatcttttttaaatttatgacccttggg |
8454468 |
T |
|
| Q |
116 |
aaatattgaacaataggcaaaacaacgctttagattggaagggagattatggtaactcaatctcaatactgagttaa |
192 |
Q |
| |
|
||| || |||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
8454469 |
aaaaatggaacaataggaaaagcaacgctttagattagaagggagattatggtaactcaatctcagtactgagttaa |
8454545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 18 - 180
Target Start/End: Original strand, 6946986 - 6947148
Alignment:
| Q |
18 |
aactcttcttcacttttgtctcttcggcaacatttcaacaaaccttctgccatccaaagcatgatcaattcatcttttttaaattcataacccttgggaa |
117 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
6946986 |
aactcttcttcacttttgtctcttctgcaacacttcaacaaaccttctgccatccaaagcttgatcaattcatctttttcaaatgtataacccttgggaa |
6947085 |
T |
|
| Q |
118 |
atattgaacaataggcaaaacaacgctttagattggaagggagattatggtaactcaatctca |
180 |
Q |
| |
|
| || || |||||||||||||||||||| |||||||||| ||||| |||||||||||||||| |
|
|
| T |
6947086 |
aaatggagcaataggcaaaacaacgcttccgattggaaggaagattgtggtaactcaatctca |
6947148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 16 - 193
Target Start/End: Complemental strand, 6449101 - 6448924
Alignment:
| Q |
16 |
caaactcttcttcacttttgtctcttcggcaacatttcaacaaaccttctgccatccaaagcatgatcaattcatcttttttaaattcataacccttggg |
115 |
Q |
| |
|
||||||||||||||||||||||| || |||||| ||||||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||||||| || |
|
|
| T |
6449101 |
caaactcttcttcacttttgtctgatccgcaacacttcaacataccttctgccatccaaagcttgatcaattcatcctttttaaatctataacccttagg |
6449002 |
T |
|
| Q |
116 |
aaatattgaacaataggcaaaacaacgctttagattggaagggagattatggtaactcaatctcaatactgagttaat |
193 |
Q |
| |
|
|| || || ||||||||||| |||| ||||||| |||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
6449001 |
gaaaatggagcaataggcaaagcaacactttagactggaagggagattatggtaactcaatctcagtactgagttaat |
6448924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 16 - 193
Target Start/End: Original strand, 6735705 - 6735882
Alignment:
| Q |
16 |
caaactcttcttcacttttgtctcttcggcaacatttcaacaaaccttctgccatccaaagcatgatcaattcatcttttttaaattcataacccttggg |
115 |
Q |
| |
|
||||||||||||||||||||||| || |||||| |||| |||||||||||||||||||||| |||||||| | |||||||||||| |||||||||||| |
|
|
| T |
6735705 |
caaactcttcttcacttttgtctgatccgcaacacttcagcaaaccttctgccatccaaagcttgatcaatacttcttttttaaatctataacccttggg |
6735804 |
T |
|
| Q |
116 |
aaatattgaacaataggcaaaacaacgctttagattggaagggagattatggtaactcaatctcaatactgagttaat |
193 |
Q |
| |
|
|| || |||||||||||||| ||||||||||||| || ||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
6735805 |
gaaaatggaacaataggcaaagcaacgctttagatctgatgggagattatggtaactcaatcttagtactgagttaat |
6735882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 8471281 - 8471456
Alignment:
| Q |
18 |
aactcttcttcacttttgtctcttcggcaacatttcaacaaaccttctgccatccaaagcatgatcaattcatcttttttaaattcataacccttgggaa |
117 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||| | | ||| ||| ||||||| |||| |
|
|
| T |
8471281 |
aactcttcctcacttttgtctcttctgcaacatttcagcaaaccttctgccatccaaagcttgatcaattcatccctgtcaaactcaaaacccttaggaa |
8471380 |
T |
|
| Q |
118 |
atattgaacaataggcaaaacaacgctttagattggaagggagattatggtaactcaatctcaatactgagttaat |
193 |
Q |
| |
|
|||| || || ||||||||||| ||||| ||||| |||||||| ||||||||||||||||||||| | |||||||| |
|
|
| T |
8471381 |
atatagagcagtaggcaaaacagcgcttcagattagaagggaggttatggtaactcaatctcaatgccgagttaat |
8471456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 16 - 193
Target Start/End: Complemental strand, 6554752 - 6554575
Alignment:
| Q |
16 |
caaactcttcttcacttttgtctcttcggcaacatttcaacaaaccttctgccatccaaagcatgatcaattcatcttttttaaattcataacccttggg |
115 |
Q |
| |
|
||||||||||||||||||||||| || |||||| |||| |||||||||||||||||||||| |||||||| | ||||||| |||| ||| |||||||| |
|
|
| T |
6554752 |
caaactcttcttcacttttgtctgatccgcaacacttcagcaaaccttctgccatccaaagcttgatcaatacttctttttcaaatctatagcccttggg |
6554653 |
T |
|
| Q |
116 |
aaatattgaacaataggcaaaacaacgctttagattggaagggagattatggtaactcaatctcaatactgagttaat |
193 |
Q |
| |
|
|| || |||||||| ||||| ||||||||||||| |||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
6554652 |
gaaaatggaacaatacgcaaagcaacgctttagatccgaagggagattatggtaactcaatcttagtactgagttaat |
6554575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 16 - 180
Target Start/End: Complemental strand, 6480296 - 6480132
Alignment:
| Q |
16 |
caaactcttcttcacttttgtctcttcggcaacatttcaacaaaccttctgccatccaaagcatgatcaattcatcttttttaaattcataacccttggg |
115 |
Q |
| |
|
||||||||||||||||||||| | || |||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||| |
|
|
| T |
6480296 |
caaactcttcttcacttttgtatgatccgcaacacttcaacaaaccttctgccatccaaagcttgatcaattcatctttttcaaatgtataacccttggg |
6480197 |
T |
|
| Q |
116 |
aaatattgaacaataggcaaaacaacgctttagattggaagggagattatggtaactcaatctca |
180 |
Q |
| |
|
|| || ||||| ||||||| ||||||||| ||| |||||||||||| |||||||||||||||| |
|
|
| T |
6480196 |
gaaaatggaacagaaggcaaagcaacgcttttgatcggaagggagattgtggtaactcaatctca |
6480132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 8589446 - 8589618
Alignment:
| Q |
18 |
aactcttcttcacttttgtctcttcggcaacatttcaacaaaccttctgccatccaaagcatgatcaattcatcttttttaaattcataacccttgggaa |
117 |
Q |
| |
|
||||||||||||||||||| | || |||||| ||||| ||||||||||||||||| ||| ||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
8589446 |
aactcttcttcacttttgtgtgatccgcaacacttcaataaaccttctgccatccagagcttgatcaattcacctttttcaaattcataacccttgggaa |
8589545 |
T |
|
| Q |
118 |
atattgaacaataggcaaaacaacgctttagattggaagggagattatggtaactcaatctcaatactgagtt |
190 |
Q |
| |
|
| || |||||||| | ||| ||| |||||||| |||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
8589546 |
aaatggaacaataagaaaagcaatgctttagaatggaagggagattatggtaacttaatctcagaactgagtt |
8589618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 18 - 180
Target Start/End: Original strand, 6916846 - 6917008
Alignment:
| Q |
18 |
aactcttcttcacttttgtctcttcggcaacatttcaacaaaccttctgccatccaaagcatgatcaattcatcttttttaaattcataacccttgggaa |
117 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||| |||| |||||| | || | ||| ||||| |||||||||| |
|
|
| T |
6916846 |
aactcttcttcacttttgtctcttccacaacacttcagcaaaccttctgccatccaaagcttgattaattcacccttctcaaactcatagcccttgggaa |
6916945 |
T |
|
| Q |
118 |
atattgaacaataggcaaaacaacgctttagattggaagggagattatggtaactcaatctca |
180 |
Q |
| |
|
|||| ||||| || ||||||||| |||| ||||| |||| ||||||| ||||||||| ||||| |
|
|
| T |
6916946 |
atatggaacagtaagcaaaacaatgcttcagatttgaagagagattaaggtaactcattctca |
6917008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 6899833 - 6899998
Alignment:
| Q |
18 |
aactcttcttcacttttgtctcttcggcaacatttcaacaaaccttctgccatccaaagcatgatcaattcatcttttttaaattcataacccttgggaa |
117 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||| |||| | |||| | || | ||| ||||| ||||| |||| |
|
|
| T |
6899833 |
aactcttcttcacttttgtctcttccgcaacacttcagcaaaccttctgccatccaaagcttgattacttcacccttctcaaactcatagccctttggaa |
6899932 |
T |
|
| Q |
118 |
atattgaacaataggcaaaacaacgctttagattggaagggagattatggtaactcaatctcaata |
183 |
Q |
| |
|
||| |||||||| |||||||| |||| |||||||||||||| ||| ||||||||||| |||||| |
|
|
| T |
6899933 |
ataaagaacaataatcaaaacaatgcttcagattggaagggaggttaaggtaactcaatttcaata |
6899998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 181
Target Start/End: Complemental strand, 6839213 - 6839053
Alignment:
| Q |
21 |
tcttcttcacttttgtctcttcggcaacatttcaacaaaccttctgccatccaaagcatgatcaattcatcttttttaaattcataacccttgggaaata |
120 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||| |||||||||||||||||||||| ||||||||||||| | | ||| ||| ||||| | ||||||| |
|
|
| T |
6839213 |
tcttcttcacttttgtctcttccgcagtatttcagcaaaccttctgccatccaaagcttgatcaattcatccctgtcaaactcaaaacccctaggaaata |
6839114 |
T |
|
| Q |
121 |
ttgaacaataggcaaaacaacgctttagattggaagggagattatggtaactcaatctcaa |
181 |
Q |
| |
|
||||| ||||||||||| || || | | |||||||||| |||||||||||||||||||| |
|
|
| T |
6839113 |
cagaacagtaggcaaaacagcgtttcaaactggaagggaggttatggtaactcaatctcaa |
6839053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 6168636 - 6168791
Alignment:
| Q |
18 |
aactcttcttcacttttgtctcttcggcaacatttcaacaaaccttctgccatccaaagcatgatcaattcatcttttttaaattcataacccttgggaa |
117 |
Q |
| |
|
|||||||||||| |||||||| ||| |||||| || | |||||||| ||||||||||||| |||| ||| |||| |||| ||| | |||||||||||||| |
|
|
| T |
6168636 |
aactcttcttcatttttgtcttttccgcaacactttagcaaaccttgtgccatccaaagcttgattaatccatccttttcaaacttataacccttgggaa |
6168735 |
T |
|
| Q |
118 |
atattgaacaataggcaaaacaacgctttagattggaagggagattatggtaactc |
173 |
Q |
| |
|
|||| |||||||| ||||||||| |||| ||||| |||||||| ||| |||||||| |
|
|
| T |
6168736 |
atatagaacaatatgcaaaacaatgcttcagatttgaagggaggttaaggtaactc |
6168791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 6591637 - 6591462
Alignment:
| Q |
18 |
aactcttcttcacttttgtctcttcggcaacatttcaacaaaccttctgccatccaaagcatgatcaattcatcttttttaaattcataacccttgggaa |
117 |
Q |
| |
|
|||| |||||||||||||| |||| ||||| || | ||| |||||||||||||||||| |||| |||||| | || | ||| ||||| |||||||||| |
|
|
| T |
6591637 |
aacttttcttcacttttgtgtctttcccaacactttagcaagccttctgccatccaaagcttgattaattcacccttctcaaactcatagcccttgggaa |
6591538 |
T |
|
| Q |
118 |
atattgaacaataggcaaaacaacgctttagattggaagggagattatggtaactcaatctcaatactgagttaat |
193 |
Q |
| |
|
|||| |||||||| |||||||||||||| |||||||| ||||| ||| ||||||||||||||| ||| | |||||| |
|
|
| T |
6591537 |
atatagaacaataagcaaaacaacgcttcagattggatgggaggttaaggtaactcaatctcagtacggggttaat |
6591462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 56 - 174
Target Start/End: Original strand, 6245070 - 6245188
Alignment:
| Q |
56 |
caaaccttctgccatccaaagcatgatcaattcatcttttttaaattcataacccttgggaaatattgaacaataggcaaaacaacgctttagattggaa |
155 |
Q |
| |
|
||||||||||||||||||||| |||| ||| |||| |||| ||| |||||||||||||||||||| |||||||| ||||||||| |||| ||||||||| |
|
|
| T |
6245070 |
caaaccttctgccatccaaagtttgattaatccatccttttcaaactcataacccttgggaaatatagaacaataagcaaaacaatgcttcagattggaa |
6245169 |
T |
|
| Q |
156 |
gggagattatggtaactca |
174 |
Q |
| |
|
||||| ||| ||||||||| |
|
|
| T |
6245170 |
gggaggttaaggtaactca |
6245188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 56 - 181
Target Start/End: Original strand, 6258979 - 6259104
Alignment:
| Q |
56 |
caaaccttctgccatccaaagcatgatcaattcatcttttttaaattcataacccttgggaaatattgaacaataggcaaaacaacgctttagattggaa |
155 |
Q |
| |
|
|||||||| ||||||||||||| |||| |||||| | |||| ||| |||||||||||||||||||| |||||||| ||||||||| |||| ||||||||| |
|
|
| T |
6258979 |
caaaccttttgccatccaaagcttgattaattcacccttttcaaactcataacccttgggaaatatagaacaataagcaaaacaatgcttcagattggaa |
6259078 |
T |
|
| Q |
156 |
gggagattatggtaactcaatctcaa |
181 |
Q |
| |
|
||||| || ||||||||| |||||| |
|
|
| T |
6259079 |
gggaggctaaggtaactcattctcaa |
6259104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 178
Target Start/End: Complemental strand, 6722378 - 6722218
Alignment:
| Q |
18 |
aactcttcttcacttttgtctcttcggcaacatttcaacaaaccttctgccatccaaagcatgatcaattcatcttttttaaattcataacccttgggaa |
117 |
Q |
| |
|
||||||| ||||||||||||||||| |||||| ||||||||| |||||| |||||||||| | || | |||| || | ||| ||||| |||||||||| |
|
|
| T |
6722378 |
aactcttgttcacttttgtctcttccgcaacacttcaacaaatcttctgtcatccaaagcttaattagttcactcttctcaaactcatagcccttgggaa |
6722279 |
T |
|
| Q |
118 |
atattgaacaataggcaaaacaacgctttagattggaagggagattatggtaactcaatct |
178 |
Q |
| |
|
|||| |||||||| |||||||||||||| |||| ||||||||| ||| | |||||||||| |
|
|
| T |
6722278 |
atatagaacaataagcaaaacaacgcttcagatcggaagggaggttaaagaaactcaatct |
6722218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 4389252 - 4389077
Alignment:
| Q |
18 |
aactcttcttcacttttgtctcttcggcaacatttcaacaaaccttctgccatccaaagcatgatcaattcatcttttttaaattcataacccttgggaa |
117 |
Q |
| |
|
|||||||||||||||||||| |||| |||||| ||||||||||| || || ||||||||| |||| |||||| || | ||| | ||| ||||||| |
|
|
| T |
4389252 |
aactcttcttcacttttgtcacttccgcaacacttcaacaaaccatccgctatccaaagcttgattaattcacgcttgtcaaaaatgtgacctttgggaa |
4389153 |
T |
|
| Q |
118 |
atattgaacaataggcaaaacaacgctttagattggaagggagattatggtaactcaatctcaatactgagttaat |
193 |
Q |
| |
|
|||| |||||||| | ||||||||| || ||| |||||||||||| ||||||||||||||||| |||||| ||||| |
|
|
| T |
4389152 |
atatggaacaataagaaaaacaacgtttaagaatggaagggagatgatggtaactcaatctcagtactgaattaat |
4389077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 180
Target Start/End: Original strand, 6882249 - 6882411
Alignment:
| Q |
18 |
aactcttcttcacttttgtctcttcggcaacatttcaacaaaccttctgccatccaaagcatgatcaattcatcttttttaaattcataacccttgggaa |
117 |
Q |
| |
|
||||||| ||| |||||||||||| | ||| |||||||||||||||||||||||||| | || | |||| | || | || ||||| |||||||||| |
|
|
| T |
6882249 |
aactcttgttcgcttttgtctcttttgtgacacttcaacaaaccttctgccatccaaagtttaattagttcacccttctcaagctcatagcccttgggaa |
6882348 |
T |
|
| Q |
118 |
atattgaacaataggcaaaacaacgctttagattggaagggagattatggtaactcaatctca |
180 |
Q |
| |
|
|||| |||||||| |||||||||||||| |||||||||||||| || ||||||||||||||| |
|
|
| T |
6882349 |
atatagaacaataagcaaaacaacgcttcagattggaagggaggataaggtaactcaatctca |
6882411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 56 - 180
Target Start/End: Complemental strand, 13270805 - 13270681
Alignment:
| Q |
56 |
caaaccttctgccatccaaagcatgatcaattcatcttttttaaattcataacccttgggaaatattgaacaataggcaaaacaacgctttagattggaa |
155 |
Q |
| |
|
|||||||| ||||||||||||| |||| ||| |||| |||| ||| |||||||||||||||||||| |||||||| ||||||||| |||| ||||||||| |
|
|
| T |
13270805 |
caaaccttgtgccatccaaagcttgattaatccatccttttcaaactcataacccttgggaaatatagaacaatatgcaaaacaatgcttcagattggaa |
13270706 |
T |
|
| Q |
156 |
gggagattatggtaactcaatctca |
180 |
Q |
| |
|
|| || || ||||||||| ||||| |
|
|
| T |
13270705 |
ggtaggctaaggtaactcattctca |
13270681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 5298451 - 5298626
Alignment:
| Q |
18 |
aactcttcttcacttttgtctcttcggcaacatttcaacaaaccttctgccatccaaagcatgatcaattcatcttttttaaattcataacccttgggaa |
117 |
Q |
| |
|
|||||||||||| |||| || ||| ||| || ||||||||||||||||||||||||||| |||| |||||| | || ||| |||||| | |||| |
|
|
| T |
5298451 |
aactcttcttcagttttatcaattctgcagcacttcaacaaaccttctgccatccaaagcttgattaattcagccttgcaaaaaatataacctcttggaa |
5298550 |
T |
|
| Q |
118 |
atattgaacaataggcaaaacaacgctttagattggaagggagattatggtaactcaatctcaatactgagttaat |
193 |
Q |
| |
|
|||| |||||||| | |||||||||||| ||||| |||||||||| |||| ||||||| ||||| ||||||||||| |
|
|
| T |
5298551 |
atatggaacaataagaaaaacaacgcttcagatttgaagggagatgatggaaactcaacctcaaaactgagttaat |
5298626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 180
Target Start/End: Original strand, 7749747 - 7749909
Alignment:
| Q |
18 |
aactcttcttcacttttgtctcttcggcaacatttcaacaaaccttctgccatccaaagcatgatcaattcatcttttttaaattcataacccttgggaa |
117 |
Q |
| |
|
|||| ||||||| |||||||||||| ||||| || | ||| |||||||||||||||||| |||| || || || | ||| ||||| ||||| |||| |
|
|
| T |
7749747 |
aactgttcttcagttttgtctcttccccaacactttagcaagccttctgccatccaaagcttgattaacccacgcttctcaaactcatagccctttggaa |
7749846 |
T |
|
| Q |
118 |
atattgaacaataggcaaaacaacgctttagattggaagggagattatggtaactcaatctca |
180 |
Q |
| |
|
|||| |||||||| |||||||||||||| |||||||||||||| ||| ||||| ||||||||| |
|
|
| T |
7749847 |
atatagaacaataagcaaaacaacgcttcagattggaagggaggttaaggtaattcaatctca |
7749909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 160
Target Start/End: Original strand, 6265436 - 6265578
Alignment:
| Q |
18 |
aactcttcttcacttttgtctcttcggcaacatttcaacaaaccttctgccatccaaagcatgatcaattcatcttttttaaattcataacccttgggaa |
117 |
Q |
| |
|
|||||||||| ||||||| ||||| |||||| || |||||||||||||||||||||||| |||| |||||| | | | ||| |||||||||||||||| |
|
|
| T |
6265436 |
aactcttctttgcttttgtttcttccgcaacaatttaacaaaccttctgccatccaaagcctgattaattcaccctcctcaaactcataacccttgggaa |
6265535 |
T |
|
| Q |
118 |
atattgaacaataggcaaaacaacgctttagattggaagggag |
160 |
Q |
| |
|
| || ||| | |||||||||||||| ||||||| |||||| |
|
|
| T |
6265536 |
gattagaccaacaagcaaaacaacgcttcagattgggagggag |
6265578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 51 - 160
Target Start/End: Original strand, 6142064 - 6142173
Alignment:
| Q |
51 |
ttcaacaaaccttctgccatccaaagcatgatcaattcatcttttttaaattcataacccttgggaaatattgaacaataggcaaaacaacgctttagat |
150 |
Q |
| |
|
||||| ||||||||||||||||||||| |||| |||||| | || | ||| ||||| |||||||||||||| |||||||| ||||||||| |||| |||| |
|
|
| T |
6142064 |
ttcaagaaaccttctgccatccaaagcttgattaattcacccttctcaaactcatagcccttgggaaatatagaacaataagcaaaacaatgcttcagat |
6142163 |
T |
|
| Q |
151 |
tggaagggag |
160 |
Q |
| |
|
|||||||| |
|
|
| T |
6142164 |
cagaagggag |
6142173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 111 - 193
Target Start/End: Original strand, 5267869 - 5267951
Alignment:
| Q |
111 |
ttgggaaatattgaacaataggcaaaacaacgctttagattggaagggagattatggtaactcaatctcaatactgagttaat |
193 |
Q |
| |
|
|||||||||| |||||||| | |||||| ||||| |||||||||||||||| ||||||||||||||||| |||||| ||||| |
|
|
| T |
5267869 |
ttgggaaataaggaacaataagaaaaacagcgcttcagattggaagggagatgatggtaactcaatctcagtactgaattaat |
5267951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 105 - 193
Target Start/End: Original strand, 5249976 - 5250064
Alignment:
| Q |
105 |
taacccttgggaaatattgaacaataggcaaaacaacgctttagattggaagggagattatggtaactcaatctcaatactgagttaat |
193 |
Q |
| |
|
||||| || |||||||| |||||||| | ||| |||||||| ||| | ||||||||| ||||||||||||||||| |||||| ||||| |
|
|
| T |
5249976 |
taacctttaggaaatatggaacaataagaaaagcaacgcttaagaatagaagggagacaatggtaactcaatctcagtactgaattaat |
5250064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 6573607 - 6573425
Alignment:
| Q |
18 |
aactcttcttcacttttgtctcttcggcaacatttcaacaaaccttctgccatccaaagcatgatcaattcatcttttttaaattcataacccttgggaa |
117 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||| ||||||||| ||||||||||| |||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
6573607 |
aactcttgttcacttttgtctcttccgcaacatttcagcaaaccttcagccatccaaaggttgatcaattcatctttttcaaatttataacccttgggaa |
6573508 |
T |
|
| Q |
118 |
atattgaacaataggcaaaacaacgctttagattggaagggagattatggtaactcaatctcaatactgagttaattccatca |
200 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||| |
|
|
| T |
6573507 |
atatggaacaatatgcaaaacaacgctttagattggaagggagattatgataactcaatctcaataccgagttaatttcatca |
6573425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 16 - 193
Target Start/End: Complemental strand, 7791 - 7614
Alignment:
| Q |
16 |
caaactcttcttcacttttgtctcttcggcaacatttcaacaaaccttctgccatccaaagcatgatcaattcatcttttttaaattcataacccttggg |
115 |
Q |
| |
|
||||||||||||||||||||||| || |||||| |||| |||||||||| ||||||||||| |||||||| | ||||||| |||| ||| |||||||| |
|
|
| T |
7791 |
caaactcttcttcacttttgtctgatccgcaacacttcagcaaaccttctcccatccaaagcttgatcaatacttctttttcaaatctatagcccttggg |
7692 |
T |
|
| Q |
116 |
aaatattgaacaataggcaaaacaacgctttagattggaagggagattatggtaactcaatctcaatactgagttaat |
193 |
Q |
| |
|
||| || |||||||||| ||| |||||| |||||| |||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
7691 |
aaaaatggaacaataggaaaagcaacgccttagatcagaagggagattatggtaactcaatctcagtactgagttaat |
7614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 56 - 180
Target Start/End: Complemental strand, 35140618 - 35140494
Alignment:
| Q |
56 |
caaaccttctgccatccaaagcatgatcaattcatcttttttaaattcataacccttgggaaatattgaacaataggcaaaacaacgctttagattggaa |
155 |
Q |
| |
|
||||||||||| |||||||||| |||| ||| |||| |||| ||| |||||||||||||||||||| ||| |||| ||||||||| |||| ||||||||| |
|
|
| T |
35140618 |
caaaccttctgtcatccaaagcttgattaatccatcattttcaaactcataacccttgggaaatatagaataatatgcaaaacaatgcttcagattggaa |
35140519 |
T |
|
| Q |
156 |
gggagattatggtaactcaatctca |
180 |
Q |
| |
|
||||| || ||||||||| ||||| |
|
|
| T |
35140518 |
gggaggctaaggtaactcattctca |
35140494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 178
Target Start/End: Complemental strand, 25242445 - 25242285
Alignment:
| Q |
18 |
aactcttcttcacttttgtctcttcggcaacatttcaacaaaccttctgccatccaaagcatgatcaattcatcttttttaaattcataacccttgggaa |
117 |
Q |
| |
|
||||||||||||||||||| | ||| ||||| |||| ||| |||| ||| ||||||||| |||| |||||| | || ||| ||||||| || |||| |
|
|
| T |
25242445 |
aactcttcttcacttttgtttgttctacaacacttcagcaagccttatgctatccaaagcttgattaattcacccttgcaaaaagcataacctttaggaa |
25242346 |
T |
|
| Q |
118 |
atattgaacaataggcaaaacaacgctttagattggaagggagattatggtaactcaatct |
178 |
Q |
| |
|
|||| ||||| || |||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
25242345 |
atatggaacagtaactaaaacaacgcttcagattggaagggagattatggtaactcaatct |
25242285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0958 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0958
Description:
Target: scaffold0958; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 114
Target Start/End: Complemental strand, 190 - 140
Alignment:
| Q |
64 |
ctgccatccaaagcatgatcaattcatcttttttaaattcataacccttgg |
114 |
Q |
| |
|
|||||||||||||| | |||||||||||||||| | ||||||||||||||| |
|
|
| T |
190 |
ctgccatccaaagcttaatcaattcatctttttcatattcataacccttgg |
140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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