View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1802_low_7 (Length: 511)
Name: NF1802_low_7
Description: NF1802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1802_low_7 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: scaffold0028 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 10 - 495
Target Start/End: Original strand, 124913 - 125399
Alignment:
| Q |
10 |
attattcttatggcaattagaagcaaacaaaaaatacttgttataacaacaatatattataaaccaacaacatagtttggtgaactaaaaatcacctctt |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
124913 |
attattcttatggcaattagaagcaaacaaaaaatacttgttataacaacaatatattataaaccaacaacatagtttggtgaactaaaaatcacctctt |
125012 |
T |
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| Q |
110 |
tgtcgcacaccaccatctcaatatgttgtttgttctttgaatttccaacagtccataaatcaacaactcgaacagcaattttccacaaagattttgaatc |
209 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
125013 |
tgtcgcaccccaccatctcaatatgttgtttgttctttgaatttccaacagtccataaatcaacaactcgaacagcaattttccacaaagattttgaatc |
125112 |
T |
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| Q |
210 |
attgaggctgttaattttttggaaaggcctagccattgttgctgtaaaaaacatgttgacaatgacattttacaatgatttcacattcactttacaaaac |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
125113 |
attgaggctgttaattttttggaaaggcctagccattgttgctgtaaaaaacatgttgacaatgacattttacaatgatttcacattcactttacaaaat |
125212 |
T |
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| Q |
310 |
atttnnnnnnntgcacatgcatttcagacaataatttaagttgacatgttgaacaaagttgatataaagtaaacg-tttnnnnnnnnnntggaaccttaa |
408 |
Q |
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|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||| |
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| T |
125213 |
atttaaaaaaatgcacatgcatttcaaacaataatttaagttgacatgttgaacaaagttgatataaagtaaacgttttaaaaaaaaaatggaacattaa |
125312 |
T |
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| Q |
409 |
caaacgaaataaaaatatgggttttcttttacaatatatactaatattcacagatctatttccttaaatgaaactgaaccaaaaaac |
495 |
Q |
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| T |
125313 |
caaacgaaataaaaatatgggttttcttttacaatatatactaatattctcagatctatttccttaaatgaaactgaaccaaaaaac |
125399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 7e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 102 - 260
Target Start/End: Original strand, 22079870 - 22080028
Alignment:
| Q |
102 |
cacctctttgtcgcacaccaccatctcaatatgttgtttgttctttgaatttccaacagtccataaatcaacaactcgaacagcaattttccacaaagat |
201 |
Q |
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|||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||| |||| |
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| T |
22079870 |
cacctctttgtcacacaacaccatctcaatatgttgtttgttctttgaatttgcaacagtccacatgtcaacaactcgaacagcaattttccacagagat |
22079969 |
T |
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| Q |
202 |
tttgaatcattgaggctgttaattttttggaaaggcctagccattgttgctgtaaaaaa |
260 |
Q |
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| T |
22079970 |
ttgaaatcattgatgttcttgatcttttgcaaaggcctggccattgttgctggaaaaaa |
22080028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 103 - 253
Target Start/End: Original strand, 23700170 - 23700320
Alignment:
| Q |
103 |
acctctttgtcgcacaccaccatctcaatatgttgtttgttctttgaatttccaacagtccataaatcaacaactcgaacagcaattttccacaaagatt |
202 |
Q |
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||||||||||| |||| |||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||| |||||||||||| ||||| |
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| T |
23700170 |
acctctttgtcacacaacaccatctcaatatgttgtttgctctttgaattagtaacagtccacaaatcaacaactcgaacatcaattttccacagagatt |
23700269 |
T |
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| Q |
203 |
ttgaatcattgaggctgttaattttttggaaaggcctagccattgttgctg |
253 |
Q |
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| T |
23700270 |
tggaaccattgaggttcttgattttttccaaaggcctagccattgttgctg |
23700320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 102 - 249
Target Start/End: Complemental strand, 1522683 - 1522538
Alignment:
| Q |
102 |
cacctctttgtcgcacaccaccatctcaatatgttgtttgttctttgaatttccaacagtccataaatcaacaactcgaacagcaattttccacaaagat |
201 |
Q |
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|||||||||||| |||| ||||||||||||||| ||||| |||||||||||| |||||||||| | ||||||||||||||| |||||||| || ||| |
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| T |
1522683 |
cacctctttgtcacacaacaccatctcaatatgctgtttcttctttgaatttgcaacagtccacatgtcaacaactcgaacaacaattttc--cagggat |
1522586 |
T |
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| Q |
202 |
tttgaatcattgaggctgttaattttttggaaaggcctagccattgtt |
249 |
Q |
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|| |||||||||||| | || || ||||| |||||||||||||||||| |
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| T |
1522585 |
ttggaatcattgaggttcttgatcttttgcaaaggcctagccattgtt |
1522538 |
T |
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