View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18030_high_3 (Length: 575)
Name: NF18030_high_3
Description: NF18030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18030_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 252 - 556
Target Start/End: Original strand, 52262300 - 52262603
Alignment:
| Q |
252 |
caatattatccctagcttgaacagcagcaacagatctcgcaccattctcagccaccatttcatcatcaaacaattcaaaattccatccaggatccatctt |
351 |
Q |
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| T |
52262300 |
caatattatccctagcttgaacagcagcaacagatctcgcaccattctcagccaccatttcatcatcaaacaattcaaaattccatccag-atccatctt |
52262398 |
T |
|
| Q |
352 |
ctcatttctcatctcacaaatattatgcaaaacacaacaagcacctaaaatcttaggcaaatcctcaattttcacctctgtcctcttctgcaaacaggac |
451 |
Q |
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| T |
52262399 |
ctcatttctcatctcacaaatattatgcaaaacacaacaagcacctaaaatcttaggcaaatcctcaattttcacctctgtcctcttttgcaaacaggac |
52262498 |
T |
|
| Q |
452 |
cacctccctttcagccttgcaaatgcatctttagcaatcctctgaatatcctcaaccctctcattaaacgcgtgctgcgtccaagtaagattcttatgtg |
551 |
Q |
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| T |
52262499 |
cacctccctttcagccttgcaaatgcatctttagcaatcctctgaatatcctcaaccttctcattaaacgcgtgctgcgtccaagtaagattcttatgtg |
52262598 |
T |
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| Q |
552 |
cataa |
556 |
Q |
| |
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||||| |
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| T |
52262599 |
cataa |
52262603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 183 - 556
Target Start/End: Original strand, 52250584 - 52250961
Alignment:
| Q |
183 |
tgacataacagaaaacataaa----cctatagaaaagtattgccagcacggccacgatgcaacaagtcatgagcaatattatccctagcttgaacagcag |
278 |
Q |
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| T |
52250584 |
tgacataacagaaaacataaaaaaacttataaaaaagtattgccaacacgaccacgatgcaacaaatcatgagcaatattatccctagcttgagcagcag |
52250683 |
T |
|
| Q |
279 |
caacagatctcgcaccattctcagccaccatttcatcatcaaacaattcaaaattccatccaggatccatcttctcatttctcatctcacaaatattatg |
378 |
Q |
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| T |
52250684 |
caacagatttcacaccattctcagcaaccatttcatcatcaaaaagttcaaaattccatgcaggatccatcttctcattcctcatttcacaaatattatg |
52250783 |
T |
|
| Q |
379 |
caaaacacaacaagcacctaaaatcttaggcaaatcctcaattttcacctctgtcctcttctgcaaacaggaccacctccctttcagccttgcaaatgca |
478 |
Q |
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|||||||||||||||||| | || |||||| |||||||| ||||||||| |||||||||||||||| |||||||| ||||||| | ||||||| ||| |
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| T |
52250784 |
caaaacacaacaagcaccaagaacaccaggcaactcctcaatcttcacctctatcctcttctgcaaacaagaccaccttcctttcacctttgcaaacgca |
52250883 |
T |
|
| Q |
479 |
tctttagcaatcctctgaatatcctcaaccctctcattaaacgcgtgctgcgtccaagtaagattcttatgtgcataa |
556 |
Q |
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| T |
52250884 |
tccttactcagcttctgaatatcttccactttctcattaaacgcgtgctgtgtccaagtaagattctgatgtgtataa |
52250961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 98 - 196
Target Start/End: Original strand, 52262179 - 52262277
Alignment:
| Q |
98 |
taacaatagatccacacaatatagtcttgttcttctctaatatgaatgactagtaataagtcatagctaaaatattgaaatcatttgacataacagaaa |
196 |
Q |
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| T |
52262179 |
taacaatagatccacacaatatagtcttgttcttctctaatatgaatgactagtaataagtcatagctaaaatattgaaatcatttgacataatagaaa |
52262277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 52262119 - 52262173
Alignment:
| Q |
1 |
agtcgtgagttcaaatccgcgcccttgtaaactgatgtctccatcaaataaacta |
55 |
Q |
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| T |
52262119 |
agtcgtgagttcaaatccgcgcccttgtaaacagatgtctccatcaaataaacta |
52262173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 339 - 488
Target Start/End: Complemental strand, 3698992 - 3698843
Alignment:
| Q |
339 |
caggatccatcttctcatttctcatctcacaaatattatgcaaaacacaacaagcacctaaaatcttaggcaaatcctcaattttcacctctgtcctctt |
438 |
Q |
| |
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|||||||||| |||||| | ||||||||||||| ||||||||||||||||||||||| | | ||||||||| | | ||||| || ||||| || |
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| T |
3698992 |
caggatccattttctcacctttcatctcacaaatgttatgcaaaacacaacaagcaccaagtacaacaggcaaatcttgtagcttcacttcagtcctttt |
3698893 |
T |
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| Q |
439 |
ctgcaaacaggaccacctccctttcagccttgcaaatgcatctttagcaa |
488 |
Q |
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| T |
3698892 |
ctgcaaacaagaccacctacctttcaatctagcaaatgcatctttagcaa |
3698843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 339 - 488
Target Start/End: Complemental strand, 3702680 - 3702531
Alignment:
| Q |
339 |
caggatccatcttctcatttctcatctcacaaatattatgcaaaacacaacaagcacctaaaatc-ttaggcaaatcctcaattttcacctctgtcctct |
437 |
Q |
| |
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|||||||||| |||||| | ||||||||||||| ||||||||||||||||||||| | || || ||||||||| | || ||||| || ||||| | |
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| T |
3702680 |
caggatccattttctcacctttcatctcacaaatgttatgcaaaacacaacaagca-caaagttcaacaggcaaatcttgaagcttcacttcagtccttt |
3702582 |
T |
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| Q |
438 |
tctgcaaacaggaccacctccctttcagccttgcaaatgcatctttagcaa |
488 |
Q |
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|||||||||| |||||||| ||||||| || ||||||||||||||||||| |
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| T |
3702581 |
tctgcaaacaagaccacctacctttcaatctagcaaatgcatctttagcaa |
3702531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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