View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18030_high_5 (Length: 440)
Name: NF18030_high_5
Description: NF18030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18030_high_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Complemental strand, 33236384 - 33235946
Alignment:
| Q |
1 |
gaatgtacatatagccacttacaaaggataaaactaggtcaatggtggaaaatatgcaaaaataacactattaactccctatacactgccaagtgtgttc |
100 |
Q |
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| T |
33236384 |
gaatgtacatatagccacttacaaaggataaaactaggtcaatggtggaaaatatgcaaaaataacactattaactccctatacactgccaagtgtgttc |
33236285 |
T |
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| Q |
101 |
catttcaaccaccctaacaatcaatcatcatcatataatagtatatatgcaaaaccatgcaaaattatattattatctagtattagatcataataactaa |
200 |
Q |
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| T |
33236284 |
catttcaaccaccctaacaatcaatcatcatcatataatagtatatatgcaaaaccatgcaaaattatattattatctagtattagatcataataactaa |
33236185 |
T |
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| Q |
201 |
ttttcttacacattaattaatttctacactcctctatcacatatctttatctctcatttttcaattacacacctattacattattttctcctcaaagtgt |
300 |
Q |
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| T |
33236184 |
ttttcttacacattaattaatttctacactcctctatcacatatctttatctctcatttttcaattacacacctattacattattttctcctcaaagtgt |
33236085 |
T |
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| Q |
301 |
gattaccataaggggtgagaaattaatcatcatacacacatattttttaatgaatgattacataatagaacaagcatttggattttcatcactgaacatt |
400 |
Q |
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| T |
33236084 |
gattaccataaggggtgagaaattaatcatcatacacacatat-ttttaatgaatgattacataatagaacaagcatttggattttcatcactgaacatt |
33235986 |
T |
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| Q |
401 |
tcaacatagctatcatcaaaggtggactcttttatgttgg |
440 |
Q |
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| T |
33235985 |
tcaacatagctatcatcaaaggtggactcttttatgttgg |
33235946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 358 - 401
Target Start/End: Original strand, 40576991 - 40577034
Alignment:
| Q |
358 |
ttacataatagaacaagcatttggattttcatcactgaacattt |
401 |
Q |
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| T |
40576991 |
ttacatgatagaacaagcatttggattttcatcactgaaaattt |
40577034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 399
Target Start/End: Original strand, 38127423 - 38127463
Alignment:
| Q |
359 |
tacataatagaacaagcatttggattttcatcactgaacat |
399 |
Q |
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| T |
38127423 |
tacatgatagaacatgcatttgggttttcatcactgaacat |
38127463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 396
Target Start/End: Complemental strand, 9699770 - 9699733
Alignment:
| Q |
359 |
tacataatagaacaagcatttggattttcatcactgaa |
396 |
Q |
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| T |
9699770 |
tacataacagaacaagcatttggattctcatcactgaa |
9699733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 401
Target Start/End: Original strand, 40787056 - 40787097
Alignment:
| Q |
360 |
acataatagaacaagcatttggattttcatcactgaacattt |
401 |
Q |
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| T |
40787056 |
acataacagaacaagcattaggattttcatcactaaacattt |
40787097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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