View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18030_high_7 (Length: 343)

Name: NF18030_high_7
Description: NF18030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18030_high_7
NF18030_high_7
[»] chr7 (24 HSPs)
chr7 (1-311)||(6716794-6717103)
chr7 (1-315)||(8744860-8745176)
chr7 (4-315)||(16954361-16954673)
chr7 (1-156)||(44755494-44755649)
chr7 (6-168)||(42533315-42533478)
chr7 (2-168)||(16828995-16829162)
chr7 (1-120)||(1320697-1320817)
chr7 (21-159)||(38306124-38306264)
chr7 (30-169)||(3419743-3419884)
chr7 (1-98)||(24324856-24324953)
chr7 (45-138)||(3867000-3867095)
chr7 (30-175)||(35745914-35746057)
chr7 (6-169)||(33434963-33435127)
chr7 (32-159)||(47325974-47326103)
chr7 (6-133)||(11379190-11379318)
chr7 (21-169)||(5860366-5860516)
chr7 (1-124)||(3478251-3478375)
chr7 (21-160)||(10244045-10244185)
chr7 (66-163)||(37794859-37794958)
chr7 (73-160)||(47457145-47457233)
chr7 (9-64)||(36449044-36449099)
chr7 (21-169)||(25160668-25160818)
chr7 (234-313)||(34389670-34389751)
chr7 (1-125)||(34389860-34389985)
[»] chr5 (16 HSPs)
chr5 (1-315)||(13954292-13954606)
chr5 (6-204)||(7392094-7392290)
chr5 (6-313)||(7195302-7195613)
chr5 (6-204)||(14302493-14302692)
chr5 (21-166)||(8297325-8297471)
chr5 (47-313)||(26046068-26046336)
chr5 (1-110)||(33258940-33259050)
chr5 (21-169)||(698214-698364)
chr5 (2-125)||(24072325-24072449)
chr5 (1-146)||(34377974-34378121)
chr5 (21-146)||(18593119-18593246)
chr5 (1-95)||(25991936-25992030)
chr5 (16-125)||(39184260-39184370)
chr5 (33-139)||(29087364-29087472)
chr5 (75-160)||(27712939-27713025)
chr5 (21-120)||(17854145-17854246)
[»] chr8 (12 HSPs)
chr8 (22-313)||(10248632-10248924)
chr8 (27-163)||(17657086-17657222)
chr8 (21-160)||(9519361-9519502)
chr8 (49-160)||(24995501-24995614)
chr8 (1-169)||(36630690-36630860)
chr8 (21-169)||(32066373-32066523)
chr8 (21-169)||(34389083-34389233)
chr8 (21-169)||(37986936-37987086)
chr8 (6-94)||(15821442-15821529)
chr8 (47-94)||(12198181-12198228)
chr8 (47-94)||(12442609-12442656)
chr8 (81-144)||(31210329-31210393)
[»] chr3 (17 HSPs)
chr3 (8-315)||(25647389-25647700)
chr3 (6-210)||(4463999-4464205)
chr3 (29-310)||(37123102-37123377)
chr3 (29-169)||(14755349-14755490)
chr3 (7-123)||(14193839-14193957)
chr3 (1-159)||(19176366-19176525)
chr3 (30-160)||(20611645-20611777)
chr3 (21-168)||(34475832-34475981)
chr3 (21-120)||(23328428-23328527)
chr3 (21-169)||(2392584-2392734)
chr3 (21-169)||(2394331-2394481)
chr3 (21-146)||(47235592-47235719)
chr3 (28-125)||(823520-823618)
chr3 (6-125)||(27398856-27398976)
chr3 (235-315)||(14193644-14193726)
chr3 (21-134)||(5556459-5556573)
chr3 (73-158)||(47945577-47945663)
[»] chr6 (7 HSPs)
chr6 (16-315)||(20701876-20702178)
chr6 (1-194)||(3880641-3880835)
chr6 (21-142)||(16510379-16510502)
chr6 (1-159)||(32935397-32935556)
chr6 (30-142)||(15132610-15132722)
chr6 (21-159)||(3117355-3117496)
chr6 (100-169)||(12793969-12794037)
[»] scaffold0119 (1 HSPs)
scaffold0119 (1-311)||(42196-42510)
[»] scaffold0050 (1 HSPs)
scaffold0050 (7-313)||(36412-36724)
[»] chr2 (20 HSPs)
chr2 (1-311)||(1269192-1269506)
chr2 (6-313)||(41086851-41087159)
chr2 (1-175)||(14106582-14106757)
chr2 (21-168)||(37770719-37770867)
chr2 (21-159)||(17105275-17105414)
chr2 (21-169)||(39338943-39339093)
chr2 (8-119)||(13337178-13337290)
chr2 (6-146)||(7874169-7874309)
chr2 (75-159)||(15126535-15126620)
chr2 (48-125)||(10173683-10173762)
chr2 (23-124)||(15710606-15710708)
chr2 (12-169)||(16952452-16952609)
chr2 (12-169)||(17023117-17023274)
chr2 (12-169)||(17060423-17060580)
chr2 (12-169)||(17079024-17079181)
chr2 (73-124)||(2062807-2062859)
chr2 (53-159)||(10523960-10524068)
chr2 (6-125)||(29487030-29487149)
chr2 (74-134)||(22885263-22885324)
chr2 (235-309)||(37770934-37771012)
[»] scaffold0200 (1 HSPs)
scaffold0200 (1-222)||(19183-19406)
[»] chr4 (20 HSPs)
chr4 (6-140)||(53823484-53823619)
chr4 (6-212)||(25752983-25753190)
chr4 (1-281)||(22811218-22811500)
chr4 (6-125)||(19672999-19673119)
chr4 (6-135)||(19815287-19815417)
chr4 (24-119)||(39421094-39421190)
chr4 (21-169)||(30964294-30964444)
chr4 (1-175)||(31050720-31050894)
chr4 (1-169)||(8254880-8255050)
chr4 (1-169)||(8268298-8268468)
chr4 (12-81)||(48098276-48098345)
chr4 (21-119)||(2825688-2825786)
chr4 (47-169)||(4305578-4305702)
chr4 (73-160)||(21988049-21988137)
chr4 (21-124)||(46698863-46698967)
chr4 (6-63)||(2061801-2061858)
chr4 (104-159)||(38929698-38929753)
chr4 (73-125)||(6600076-6600129)
chr4 (73-161)||(12296037-12296126)
chr4 (60-163)||(38639525-38639630)
[»] chr1 (23 HSPs)
chr1 (1-193)||(32864619-32864814)
chr1 (9-123)||(9313355-9313470)
chr1 (21-194)||(16147384-16147558)
chr1 (6-125)||(34774770-34774889)
chr1 (31-159)||(5389509-5389639)
chr1 (1-169)||(46692877-46693047)
chr1 (85-259)||(6583333-6583507)
chr1 (21-213)||(30685982-30686175)
chr1 (21-145)||(31585838-31585964)
chr1 (1-169)||(38544796-38544964)
chr1 (1-160)||(24658793-24658952)
chr1 (1-169)||(24684536-24684704)
chr1 (21-98)||(27102116-27102194)
chr1 (49-169)||(41920306-41920428)
chr1 (16-125)||(42374061-42374171)
chr1 (1-160)||(7857517-7857676)
chr1 (99-271)||(10785489-10785656)
chr1 (1-168)||(17033441-17033609)
chr1 (30-116)||(24450017-24450105)
chr1 (1-125)||(46814525-46814649)
chr1 (230-313)||(7857360-7857444)
chr1 (86-204)||(52278317-52278436)
chr1 (21-159)||(20113599-20113739)
[»] scaffold0063 (1 HSPs)
scaffold0063 (1-125)||(58025-58150)
[»] scaffold1613 (1 HSPs)
scaffold1613 (1-169)||(1075-1243)
[»] scaffold0062 (2 HSPs)
scaffold0062 (23-124)||(59518-59620)
scaffold0062 (23-89)||(47028-47094)
[»] scaffold0068 (1 HSPs)
scaffold0068 (32-169)||(35860-36000)


Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 6716794 - 6717103
Alignment:
Q  1 ggccaaccagactttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagaca-cg 99  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||    
T  6716794 ggccaaccagactttatgattaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaataagattgcagctagacaccg 6716893  T
Q  100 actcccgatctcgaagcaaaagtaacagacccaccgaaaaccagcacgcaaaaagtaagacaaatgacataataagtagaagtgcaaacaacaaaccgat 199  Q
    |||||||||||| ||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||        
T  6716894 actcccgatctcaaagtaaaagtaactggcccaccgaaaaccagcacgcaaaaagtaagacaaatgacataataagcagaagtgcaaacaacaaac---- 6716989  T
Q  200 caaaagaaaaaggcatagctcaaacaggcccactccctccaaacaccctaaactccttaaaaactc---caaaaaacaaacaagaactagtaacgacgaa 296  Q
    |||||| ||||||||  |||| ||| ||||||||||||||||||||||||||| |||||||||| |    |||||| |||||||| ||||| ||||||||    
T  6716990 caaaaggaaaaggcactgctc-aacgggcccactccctccaaacaccctaaacaccttaaaaacccaaaaaaaaaaaaaacaagagctagtgacgacgaa 6717088  T
Q  297 caaagacccgagtaa 311  Q
    |||||||||||||||    
T  6717089 caaagacccgagtaa 6717103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 8745176 - 8744860
Alignment:
Q  1 ggccaaccagactttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagaca-cg 99  Q
    |||| |||||| |||| || |||||||||||| |||||||||| |||||| ||||||||||||| || ||||  |||||||| |||||||||||||| ||    
T  8745176 ggcccaccagaatttaggaccaaatcagaaggccacccctcaccctcggtgcaccagagaaacaccagatcacaccaaacaacattgcagctagacaccg 8745077  T
Q  100 actcccgatctcgaagcaaaagtaacagacccaccgaaaaccagcacgcaaaaagtaagacaaatgacataataagtagaagtgcaaacaacaaaccgat 199  Q
     || |||||||||||||||||||||| | |||||||||||||||||| ||||||| | |||||| ||||| ||| |  |  ||||||||||||||  |||    
T  8745076 ccttccgatctcgaagcaaaagtaaccggcccaccgaaaaccagcacacaaaaagcatgacaaacgacatgatatgcggtggtgcaaacaacaaatagat 8744977  T
Q  200 caaaagaaaaaggcatagctcaaacaggcccactccctccaaacaccctaaactccttaaaaactccaaaaaa--caaacaagaactagtaacgacgaac 297  Q
    |||||| | |||||  | |||||  || | | || |||||||||| | ||||| |||||| ||| | ||||||  ||||||||  ||||| |||||||||    
T  8744976 caaaaggagaaggctcaactcaacaagactcgcttcctccaaacatcgtaaacaccttaacaac-cgaaaaaacgcaaacaagggctagtgacgacgaac 8744878  T
Q  298 aaagacccgagtaacaaa 315  Q
    || || ||||||||||||    
T  8744877 aaggaaccgagtaacaaa 8744860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 4 - 315
Target Start/End: Complemental strand, 16954673 - 16954361
Alignment:
Q  4 caaccagactttatgatcaaatcagaagggcacccctca-ctctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagaca-cgac 101  Q
    ||||||||||||| || |||||||||||||||||||||| |||| | ||||||||||||| | ||||||  ||||| |||||||||||||||||| | ||    
T  16954673 caaccagactttaggaccaaatcagaagggcacccctcacctct-gatacaccagagaaagaccaaatcgcgccaaccaagattgcagctagacaccaac 16954575  T
Q  102 tcccgatctcgaagcaaaagtaacagacccaccgaaaaccagcacgcaaaaagtaagacaaatgacataataagtagaagtgcaaacaacaaaccgatca 201  Q
    || |||||| |||||||||||||  | |||| || |||||||||| ||  ||||| |||||| ||||  ||| | ||  |||||||||||||||  |||     
T  16954574 tctcgatctggaagcaaaagtaatcggcccatcggaaaccagcacacagtaagtatgacaaacgacaagatatgcagtggtgcaaacaacaaacatatcc 16954475  T
Q  202 aaagaaaaaggcatagctcaaacaggcccactccctccaaacaccctaaactccttaaaaactccaaaaa-acaaacaagaactagtaacgacgaacaaa 300  Q
    |||| |||||||  | |||||  || ||| || |||||||| ||||||||| |||||| || || |||||  ||||| |||  |||| ||||| |||||     
T  16954474 aaaggaaaaggctcaactcaacgagacccgctacctccaaaaaccctaaacaccttaacaa-tcgaaaaatgcaaactagagatagtgacgacaaacaag 16954376  T
Q  301 gacccgagtaacaaa 315  Q
     ||||||||||||||    
T  16954375 tacccgagtaacaaa 16954361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 44755649 - 44755494
Alignment:
Q  1 ggccaaccagactttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagaca-cg 99  Q
    |||| ||||||||||| || ||||||||||||||||||||||| | |||||||||||||||||| ||||||| | ||||||| || ||||||||||| ||    
T  44755649 ggcccaccagactttaggaccaaatcagaagggcacccctcac-cacggtacaccagagaaacaccaaatcacgtcaaacaaaatagcagctagacaccg 44755551  T
Q  100 actcccgatctcgaagcaaaagtaacagacccaccgaaaaccagcacgcaaaaagta 156  Q
    |||||||| ||| |||||||| |||  | |||||||  ||||||||| |||||||||    
T  44755550 actcccgacctcaaagcaaaattaatgggcccaccgctaaccagcacacaaaaagta 44755494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 6 - 168
Target Start/End: Original strand, 42533315 - 42533478
Alignment:
Q  6 accagactttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagacac-gactcc 104  Q
    ||||||||||| || |||||||| |||||||||||||| | || | ||||||||||||| || |||  |||||| |||| ||||||| ||||| ||||||    
T  42533315 accagactttaggaccaaatcaggagggcacccctcacccccgatgcaccagagaaacaccacatcgcgccaaataagaatgcagctggacacagactcc 42533414  T
Q  105 cgatctcgaagcaaaagtaacagacccaccgaaaaccagcacgcaaaaagtaagacaaatgaca 168  Q
    ||||||||||||||||||||| | |||| || | |||||||| ||||||||| |||||| ||||    
T  42533415 cgatctcgaagcaaaagtaaccggcccatcggagaccagcacacaaaaagtatgacaaacgaca 42533478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 168
Target Start/End: Original strand, 16828995 - 16829162
Alignment:
Q  2 gccaaccagactttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagaca-cga 100  Q
    ||||||||||||||| || ||||||||||||||||||||||| |  | ||||| ||||||||| ||||||  ||||| ||||||||||| |||||| | |    
T  16828995 gccaaccagactttaggaccaaatcagaagggcacccctcacccctgatacactagagaaacaccaaatcgcgccaaccaagattgcaggtagacaccaa 16829094  T
Q  101 ctcccgatctcgaagcaaaagtaacagacccaccgaaaaccagcacgcaaaaagtaagacaaatgaca 168  Q
    ||| | |||| |||||||||||||  |||||| || |||||||||| ||| ||||  |||||| ||||    
T  16829095 ctctcaatctggaagcaaaagtaatcgacccatcggaaaccagcacacaataagtttgacaaacgaca 16829162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 1320817 - 1320697
Alignment:
Q  1 ggccaaccagactttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagaca-cg 99  Q
    |||| |||||||||||||| ||||||| ||||||||||||||| | || |||| |||||||||| |||||   ||||||||| ||| |||||||||| |     
T  1320817 ggcccaccagactttatgaccaaatcaaaagggcacccctcacccccgatacatcagagaaacaccaaattgcgccaaacaaaattacagctagacacca 1320718  T
Q  100 actcccgatctcgaagcaaaa 120  Q
    |||||||||||||||||||||    
T  1320717 actcccgatctcgaagcaaaa 1320697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 38306264 - 38306124
Alignment:
Q  21 caaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaa-gattgcagctagacac-gactcccgatctcgaagcaa 118  Q
    ||||| || |||||||||||| | | | |||||||||||||| | ||||||||| ||||||| |||||||||||||| | |||||||| ||||||||| |    
T  38306264 caaattagcagggcacccctcgccccctgtacaccagagaaaaaccaaatcaagtcaaacaaagattgcagctagaccccgactcccgttctcgaagcca 38306165  T
Q  119 aagtaacagacccaccgaaaaccagcacgcaaaaagtaaga 159  Q
    ||  ||| | |||||||||||||||||| ||| | ||||||    
T  38306164 aatgaaccggcccaccgaaaaccagcacacaatatgtaaga 38306124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 30 - 169
Target Start/End: Original strand, 3419743 - 3419884
Alignment:
Q  30 agggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaac-aagattgcagctaga-cacgactcccgatctcgaagcaaaagtaacag 127  Q
    |||||||||||| | | ||||| |||||||||| | ||||||||| ||||| ||||||||||||||| | ||||||||||||||||||| |||  ||| |    
T  3419743 agggcacccctcgcccccggtataccagagaaaaaccaaatcaagtcaaacaaagattgcagctagaccccgactcccgatctcgaagccaaatgaaccg 3419842  T
Q  128 acccaccgaaaaccagcacgcaaaaagtaagacaaatgacat 169  Q
     | | |||||||||||||| ||| | ||||||| || |||||    
T  3419843 gctcgccgaaaaccagcacacaatatgtaagacgaaagacat 3419884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 24324856 - 24324953
Alignment:
Q  1 ggccaaccagactttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagacac 98  Q
    |||| |||| |||||| || |||||||||||||||||||| |  | |||||||||| ||||||| |||||||  ||||||||||||||| ||||||||    
T  24324856 ggcccaccaaactttaagaccaaatcagaagggcacccctaaaccccggtacaccaaagaaacaccaaatcacaccaaacaagattgcaactagacac 24324953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 45 - 138
Target Start/End: Complemental strand, 3867095 - 3867000
Alignment:
Q  45 ctcggtacaccagagaaacatcaaatcaagccaaacaa-gattgcagctagacac-gactcccgatctcgaagcaaaagtaacagacccaccgaaa 138  Q
    |||||||||||||||||| | || |||||| ||||||| ||||| |||||||| | ||||| ||||||||||||||||||||  ||||||||||||    
T  3867095 ctcggtacaccagagaaaaaccatatcaagtcaaacaaagattgtagctagaccccgactctcgatctcgaagcaaaagtaatcgacccaccgaaa 3867000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 30 - 175
Target Start/End: Original strand, 35745914 - 35746057
Alignment:
Q  30 agggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagacacga-ctcccgatctcgaagcaaaagtaacaga 128  Q
    |||||||||||| | | ||||||| ||||||| || || |||||| ||||||||||||| ||||| ||| | || |||||||||||||||||||||| |     
T  35745914 agggcacccctcgcccccggtacatcagagaa-caccatatcaagtcaaacaagattgctgctagtcaccaacttccgatctcgaagcaaaagtaaccgg 35746012  T
Q  129 cccaccgaaaaccagcacgcaaaaagtaagacaaatgacataataag 175  Q
     |||||||||||||  || ||||| | |||||||| ||||| |||||    
T  35746013 tccaccgaaaacca--acacaaaaggcaagacaaacgacatgataag 35746057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 6 - 169
Target Start/End: Complemental strand, 33435127 - 33434963
Alignment:
Q  6 accagactttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaac-aagattgcagctagacac-gactc 103  Q
    |||||||||||  | ||||| |  |||||||||||| | | |||||||||||||||| | |||||||||| |||| |||||| || |||||| | ||||     
T  33435127 accagactttagtaccaaattaacagggcacccctcgcccccggtacaccagagaaa-accaaatcaagctaaacaaagattacaactagacccggacta 33435029  T
Q  104 ccgatctcgaagcaaaagtaacagacccaccgaaaaccagcacgcaaaaagtaagacaaatgacat 169  Q
    |||||||||||||||||||||  | ||||||| |||||| ||| ||| | |||| || ||||||||    
T  33435028 ccgatctcgaagcaaaagtaatcggcccaccggaaaccaacacacaatatgtaatacgaatgacat 33434963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 32 - 159
Target Start/End: Original strand, 47325974 - 47326103
Alignment:
Q  32 ggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaa-gattgcagctagacac-gactcccgatctcgaagcaaaagtaacagac 129  Q
    |||||||||| | | |||||||||||||||| | |||||||||  |||||| |||||| ||||||| | |||||||||||||||||| |||  ||| | |    
T  47325974 ggcacccctcgcccccggtacaccagagaaaaaccaaatcaagttaaacaaagattgctgctagaccccgactcccgatctcgaagccaaatgaaccggc 47326073  T
Q  130 ccaccgaaaaccagcacgcaaaaagtaaga 159  Q
    ||| ||||||||||||| ||| | ||||||    
T  47326074 ccatcgaaaaccagcacacaatatgtaaga 47326103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 6 - 133
Target Start/End: Original strand, 11379190 - 11379318
Alignment:
Q  6 accagactttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagaca-cgactcc 104  Q
    ||||||||  |||| ||||| |||||||||||||  || |||||| ||||||||||||| |  |   ||||||||||||||| ||||||||| | |||||    
T  11379190 accagactacatgaccaaattagaagggcaccccaaaccctcggtccaccagagaaacaccgtagtcagccaaacaagattgtagctagacaccaactcc 11379289  T
Q  105 cgatctcgaagcaaaagtaacagacccac 133  Q
    |||||| ||| ||||| |||| |||||||    
T  11379290 cgatcttgaatcaaaaataaccgacccac 11379318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 169
Target Start/End: Original strand, 5860366 - 5860516
Alignment:
Q  21 caaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaa-gattgcagctagaca-cgactcccgatctcgaagcaa 118  Q
    ||||| || |||||||||||| | | |||||||  ||||||| | |||||  |||||||||| |||||||| |||||  ||||||||||||||||||| |    
T  5860366 caaattagcagggcacccctcgcccccggtacagtagagaaaaaccaaattcagccaaacaaagattgcagatagacctcgactcccgatctcgaagcca 5860465  T
Q  119 aagtaacagacccaccgaaaaccagcacgcaaaaagtaagacaaatgacat 169  Q
    ||  ||| | |||| ||||||||||||| ||| | ||||||| || |||||    
T  5860466 aatgaaccggcccatcgaaaaccagcacacaatatgtaagacgaaagacat 5860516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 3478375 - 3478251
Alignment:
Q  1 ggccaaccagactttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagacac-g 99  Q
    |||| |||| |||||| || |||| |||||||||||||||||| | || |  || ||||||  | |  |||||||||||| | ||||||||||| ||| |    
T  3478375 ggcccaccaaactttaggaccaaaacagaagggcacccctcacccccgatcaactagagaattaccctatcaagccaaaccaaattgcagctagtcaccg 3478276  T
Q  100 actcccgatctcgaagcaaaagtaa 124  Q
    |||||||||| ||||||||||||||    
T  3478275 actcccgatcccgaagcaaaagtaa 3478251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 21 - 160
Target Start/End: Complemental strand, 10244185 - 10244045
Alignment:
Q  21 caaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctaga-cacgactcccgatctcgaagcaaa 119  Q
    ||||| || |||||||||||| | | |||||||||||||||| | |||||| | | ||  ||||||||| ||||| | ||||||||||||||||||| ||    
T  10244185 caaattagcagggcacccctctcccccggtacaccagagaaaaaccaaatctatcaaacaaagattgcaactagatcccgactcccgatctcgaagccaa 10244086  T
Q  120 agtaacagacccaccgaaaaccagcacgcaaaaagtaagac 160  Q
    |  |||   || ||||||||||||||| ||| | |||||||    
T  10244085 atgaaccagccaaccgaaaaccagcacacaatatgtaagac 10244045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 163
Target Start/End: Complemental strand, 37794958 - 37794859
Alignment:
Q  66 caaatcaagccaaacaa-gattgcagctagacacga-ctcccgatctcgaagcaaaagtaacagacccaccgaaaaccagcacgcaaaaagtaagacaaa 163  Q
    ||||||||| ||||||| |||||||||||||| | | |||||||||||||||| |||  ||| | |||||||||||||||||| ||| | |||| |||||    
T  37794958 caaatcaagtcaaacaaagattgcagctagaccccaactcccgatctcgaagccaaatgaaccggcccaccgaaaaccagcacacaatatgtaaaacaaa 37794859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 160
Target Start/End: Original strand, 47457145 - 47457233
Alignment:
Q  73 agccaaacaagattgcagctagacacga-ctcccgatctcgaagcaaaagtaacagacccaccgaaaaccagcacgcaaaaagtaagac 160  Q
    |||||||||||| |||||| |||| | | |||||||||||||| |||||||| | | ||||||  || ||||||| |||||||||||||    
T  47457145 agccaaacaagaatgcagccagacgccaactcccgatctcgaatcaaaagtatccggcccaccagaatccagcacacaaaaagtaagac 47457233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 36449099 - 36449044
Alignment:
Q  9 agactttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaaca 64  Q
    |||||| | |||||||||||||||||||||||||| | || | |||||||||||||    
T  36449099 agacttcaagatcaaatcagaagggcacccctcacccccgatccaccagagaaaca 36449044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 169
Target Start/End: Complemental strand, 25160818 - 25160668
Alignment:
Q  21 caaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaac-aagattgcagctaga-cacgactcccgatctcgaagcaa 118  Q
    ||||| || |||||||||||| | |||||||||||||||||| | |||| |||| ||||| || || ||| ||||| | |||||||||||| | |||| |    
T  25160818 caaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaaaatagcaactagaccccgactcccgatcccaaagcca 25160719  T
Q  119 aagtaacagacccaccgaaaaccagcacgcaaaaagtaagacaaatgacat 169  Q
    ||  ||    ||||||||||||||| || ||| | |||||||||| |||||    
T  25160718 aatgaatcatcccaccgaaaaccagtacacaatatgtaagacaaaagacat 25160668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 313
Target Start/End: Complemental strand, 34389751 - 34389670
Alignment:
Q  234 ccctccaaacaccctaaactccttaaaaactc--caaaaaacaaacaagaactagtaacgacgaacaaagacccgagtaaca 313  Q
    ||||||||||| ||||||| |||||| ||| |  ||||||| |||| ||| ||||| ||||||||||| |||||||| ||||    
T  34389751 ccctccaaacaacctaaacaccttaacaacccaacaaaaaaaaaacgagagctagtgacgacgaacaatgacccgagcaaca 34389670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 34389985 - 34389860
Alignment:
Q  1 ggccaaccagactttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaag-ccaaacaagattgcagctagaca-c 98  Q
    |||| |||||||||||  | |||||||| ||||||| |||||| | | ||||||||||| |||| || |||||| | ||||| ||||||| ||||||| |    
T  34389985 ggcccaccagactttaaaaccaaatcagcagggcactcctcacccccagtacaccagag-aacaccatatcaagtcaaaacatgattgcaactagacacc 34389887  T
Q  99 gactcccgatctcgaagcaaaagtaac 125  Q
     ||| | ||||||||||||||| ||||    
T  34389886 aacttctgatctcgaagcaaaaataac 34389860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 133; Significance: 4e-69; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 13954292 - 13954606
Alignment:
Q  1 ggccaaccagactttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagacac-g 99  Q
    |||| ||||||||||| || |||||||||||| ||||||||||  |||||||||||||||||||  |||||||| |||| |||||||||||||||||| |    
T  13954292 ggcccaccagactttaggaccaaatcagaagg-cacccctcaccttcggtacaccagagaaacacaaaatcaagtcaaataagattgcagctagacaccg 13954390  T
Q  100 actcccgatctcgaagcaaaagtaacagacccaccgaaaaccagcacgcaaaaagtaagacaaatgacataataagtagaagtgcaaacaacaaaccgat 199  Q
    ||||  |||||||||||||||||||| | |||||||||||||||||  |||||| || |||||| ||||| |||||  |  ||||||||||||||||||     
T  13954391 actcttgatctcgaagcaaaagtaaccggcccaccgaaaaccagcatacaaaaattatgacaaacgacatgataagcggcggtgcaaacaacaaaccgac 13954490  T
Q  200 caaaagaaaaaggcatagctcaaacaggcccactccctccaaacaccctaaactccttaaaaactcca-aaaaacaaacaagaactagtaacgacgaaca 298  Q
    ||||||  |||||||||| ||  || |||| |||||||||||||||||||||| |||||| ||||||| |||  ||||||||| ||||| ||||||||||    
T  13954491 caaaaggtaaaggcatagttc-cacgggccaactccctccaaacaccctaaacaccttaacaactccagaaacgcaaacaagagctagtgacgacgaaca 13954589  T
Q  299 aagacccgagtaacaaa 315  Q
    |||||| || |||||||    
T  13954590 aagacctgaataacaaa 13954606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 6 - 204
Target Start/End: Original strand, 7392094 - 7392290
Alignment:
Q  6 accagactttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagaca-cgactcc 104  Q
    ||||||||||| || ||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||| | |||||    
T  7392094 accagactttaggaccaaatcagaagggcacccctcaccctcggtacatcagagaaacaccaaatcaagccaaacaagattgcagctagacaccaactcc 7392193  T
Q  105 cgatctcgaagcaaaagtaacagacccaccgaaaaccagcacgcaaaaagtaagacaaatgacataataagtagaagtgcaaacaacaaaccgatcaaaa 204  Q
    ||||||||||||||||||||| |  ||| |  | |||| ||| |||||||||||||||   |||| || || | | ||||| ||||||||||||||||||    
T  7392194 cgatctcgaagcaaaagtaaccggtccatcagataccaacacacaaaaagtaagacaa---acatgatgagcataggtgcagacaacaaaccgatcaaaa 7392290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 6 - 313
Target Start/End: Original strand, 7195302 - 7195613
Alignment:
Q  6 accagactttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagacac-gactcc 104  Q
    |||||||||||||  ||||||||||||||||||||||| || |||||||||||||||||  |||||| ||||||||| ||||||||||| ||| ||||||    
T  7195302 accagactttatggccaaatcagaagggcacccctcaccct-ggtacaccagagaaacactaaatcacgccaaacaatattgcagctagccaccgactcc 7195400  T
Q  105 cgatctcgaagcaaaagtaacagacccaccg-aaaaccagcacgcaaaaagtaagacaaa-tgacataataagtagaagtgcaaacaacaaaccgatcaa 202  Q
    ||||||||||||||||||||| | ||||| | ||||||| ||| ||||||||| |||||| ||| || || ||  |  |||||||||||||||  || ||    
T  7195401 cgatctcgaagcaaaagtaactggcccactggaaaaccaacacacaaaaagtatgacaaaatgatatgatgagcggtggtgcaaacaacaaacatataaa 7195500  T
Q  203 aagaaaaaggcatagctcaaacaggcccactccctccaaacaccctaaactccttaaaaactccaaaaaa--caaacaagaactagtaacgacgaacaaa 300  Q
    ||| |||||||  ||| ||||  | | | || |||||||||||||||||| |||||| ||| | ||| ||   |||||||| ||||| || || |||||     
T  7195501 aaggaaaaggcccagcacaaaaggacacgcttcctccaaacaccctaaacaccttaataacccaaaacaatgtaaacaagagctagtgacaacaaacaag 7195600  T
Q  301 gacccgagtaaca 313  Q
    |||||||||||||    
T  7195601 gacccgagtaaca 7195613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 6 - 204
Target Start/End: Original strand, 14302493 - 14302692
Alignment:
Q  6 accagactttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagacac-gactcc 104  Q
    ||||||||||| || |||| |||||||||| ||||||| |||| ||||||||||||||| || |||| ||||||| || |||||||||||||| ||||||    
T  14302493 accagactttaggaccaaaacagaagggcatccctcaccctcgatacaccagagaaacaccagatcacgccaaactagcttgcagctagacacggactcc 14302592  T
Q  105 cgatctcgaagcaaaagtaacagacccaccgaaaaccagcacgcaaaaagtaagacaaatgacataataagtagaagtgcaaacaacaaaccgatcaaaa 204  Q
    ||||||||||||||||||||| |  || ||  |||||||||| ||||||| | |||||| ||||||||| |  |  ||||||||||||||  ||||||||    
T  14302593 cgatctcgaagcaaaagtaacggggcccccagaaaccagcacacaaaaagaatgacaaacgacataatatgatgtggtgcaaacaacaaatagatcaaaa 14302692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 21 - 166
Target Start/End: Complemental strand, 8297471 - 8297325
Alignment:
Q  21 caaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagaca-cgactcccgatctcgaagcaaa 119  Q
    ||||||||||||||||||||||| |||||||||| ||||||||| |||||||||| |||||| |||||||||||||| | |||| |||||||||||||||    
T  8297471 caaatcagaagggcacccctcaccctcggtacactagagaaacaccaaatcaagcaaaacaaaattgcagctagacaccaactctcgatctcgaagcaaa 8297372  T
Q  120 agtaacagacccaccgaaaaccagcacgcaaaaagtaagacaaatga 166  Q
    |||||  | ||||| |||||||||| |  |||||||| |||||||||    
T  8297371 agtaatcggcccactgaaaaccagcgcagaaaaagtatgacaaatga 8297325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 47 - 313
Target Start/End: Original strand, 26046068 - 26046336
Alignment:
Q  47 cggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagaca-cgactcccgatctcgaagcaaaagtaacagacccaccgaaaaccagca 145  Q
    |||||||||||||||||| ||||||| |||||| |||||||||||||| || ||||||||| ||||||||||||| |||    ||||||  |||| ||||    
T  26046068 cggtacaccagagaaacaccaaatcacgccaaataagattgcagctagccaccgactcccggtctcgaagcaaaattaatctgcccaccagaaactagca 26046167  T
Q  146 cgcaaaaagtaagacaaatgacataataagtagaagtgcaaacaacaaaccgatcaaaagaaaaaggcatagctcaaacaggcccactccctccaaacac 245  Q
    | ||||||||| |||||| ||||| ||| |  |  |||||||||||||||  |||||||||| |||||  ||  |||   | ||| || |||| ||||||    
T  26046168 cacaaaaagtatgacaaacgacatgatatgcggtggtgcaaacaacaaacatatcaaaagaagaaggctcagtgcaacatgacccgcttcctctaaacac 26046267  T
Q  246 cctaaactccttaaaaactccaaaaa-acaaacaagaactagtaacgacgaacaaagacccgagtaaca 313  Q
    ||||||| ||| ||| || ||||||| |||||||||| ||||| | ||||||||| |||||||||||||    
T  26046268 cctaaacacctaaaacaccccaaaaacacaaacaagagctagtgaagacgaacaaggacccgagtaaca 26046336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 33258940 - 33259050
Alignment:
Q  1 ggccaaccagactttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagaca-cg 99  Q
    |||| |||||||||||  | |||| ||||||| ||||||||||  ||||||||||||||||||| ||||||  |||||||||||||| ||||||| | ||    
T  33258940 ggcccaccagactttagcaccaaaacagaaggacacccctcaccttcggtacaccagagaaacaccaaatcgcgccaaacaagattgtagctagataccg 33259039  T
Q  100 actcccgatct 110  Q
    |||||||||||    
T  33259040 actcccgatct 33259050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 21 - 169
Target Start/End: Complemental strand, 698364 - 698214
Alignment:
Q  21 caaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaac-aagattgcagctagacac-gactcccgatctcgaagcaa 118  Q
    ||||| || |||||||||||| | | |||||||||||||||| | ||||||||| ||||| ||||||||| |||||| | |||||||||||||||||| |    
T  698364 caaattagcagggcacccctcgcccccggtacaccagagaaaaaccaaatcaagtcaaacaaagattgcaactagaccctgactcccgatctcgaagcca 698265  T
Q  119 aagtaacagacccaccgaaaaccagcacgcaaaaagtaagacaaatgacat 169  Q
    ||  ||| | |||||  ||||||||||| ||| | ||||||| || |||||    
T  698264 aatgaaccggcccactaaaaaccagcacacaatatgtaagacgaaagacat 698214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 125
Target Start/End: Original strand, 24072325 - 24072449
Alignment:
Q  2 gccaaccagactttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagac-acga 100  Q
    ||||||||||||||| || |||||||||||||||||||  || |||||| |||||||||||||    | | | |||||||||||| |||||| ||  | |    
T  24072325 gccaaccagactttaggaccaaatcagaagggcaccccaaaccctcggtccaccagagaaacactgtagctatccaaacaagattacagctaaacgccaa 24072424  T
Q  101 ctcccgatctcgaagcaaaagtaac 125  Q
    |||||||||| ||||||||||||||    
T  24072425 ctcccgatcttgaagcaaaagtaac 24072449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 34378121 - 34377974
Alignment:
Q  1 ggccaaccagactttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaa-gattgcagctagaca-c 98  Q
    |||| |||||||||||  | ||||| || ||||||| |||  | | ||||||||||||||||   ||||||||| ||||||| ||||||||||||||  |    
T  34378121 ggcccaccagactttagtaccaaattagcagggcactccttgcccccggtacaccagagaaaacccaaatcaagtcaaacaaagattgcagctagacctc 34378022  T
Q  99 gactcccgatctcgaagcaaaagtaacagacccaccgaaaaccagcac 146  Q
    |||||||||||||||||| |||  ||| | || |||||||||||||||    
T  34378021 gactcccgatctcgaagccaaatgaaccggcctaccgaaaaccagcac 34377974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 146
Target Start/End: Complemental strand, 18593246 - 18593119
Alignment:
Q  21 caaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaa-gattgcagctagacac-gactcccgatctcgaagcaa 118  Q
    ||||| || |||||| ||||| | | |||||||| ||||||| | ||||||||| ||||||| ||||||| |||||| | |||||||||||||||||| |    
T  18593246 caaattagcagggcatccctcgcccccggtacacgagagaaaaaccaaatcaagtcaaacaaagattgcaactagaccccgactcccgatctcgaagcca 18593147  T
Q  119 aagtaacagacccaccgaaaaccagcac 146  Q
    ||  ||| | ||||||||||| ||||||    
T  18593146 aatgaaccggcccaccgaaaatcagcac 18593119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 25992030 - 25991936
Alignment:
Q  1 ggccaaccagactttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctaga 95  Q
    |||| |||||||||||  | ||||  |||||||||| |||||   ||||||||||||| ||||||||||||  | ||||||||||||||||||||    
T  25992030 ggcccaccagactttagcaccaaaatagaagggcactcctcatcttcggtacaccagaaaaacatcaaatcgtgtcaaacaagattgcagctaga 25991936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 39184260 - 39184370
Alignment:
Q  16 atgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagac-acgactcccgatctcgaa 114  Q
    ||||||||||||||||||||||||  ||  ||||| |||||||||||||      | | ||||||||||||||| ||||||  | |||||||||||||||    
T  39184260 atgatcaaatcagaagggcaccccaaaccgtcggttcaccagagaaacactgtcgccaaccaaacaagattgcaactagacgccaactcccgatctcgaa 39184359  T
Q  115 gcaaaagtaac 125  Q
     ||||||||||    
T  39184360 tcaaaagtaac 39184370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 139
Target Start/End: Complemental strand, 29087472 - 29087364
Alignment:
Q  33 gcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaa-gattgcagctagacac-gactcccgatctcgaagcaaaagtaacagacc 130  Q
    ||||||||| | | ||||||| |||||||  | |||| |||| ||||||| |||||||||||||| | |||||||||||||||||| |||  ||| | ||    
T  29087472 gcacccctcgcccccggtacaacagagaattaccaaaacaagtcaaacaaagattgcagctagactccgactcccgatctcgaagccaaatgaaccggcc 29087373  T
Q  131 caccgaaaa 139  Q
    |||||||||    
T  29087372 caccgaaaa 29087364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 160
Target Start/End: Complemental strand, 27713025 - 27712939
Alignment:
Q  75 ccaaacaagattgcagctagacacga-ctcccgatctcgaagcaaaagtaacagacccaccgaaaaccagcacgcaaaaagtaagac 160  Q
    |||||||||| |||| |||||| | | ||||||| ||||||||||||||||| | |||| |  || ||||||| |||||||||||||    
T  27713025 ccaaacaagaatgcatctagacgccaactcccgacctcgaagcaaaagtaaccggcccatcagaatccagcacacaaaaagtaagac 27712939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 17854145 - 17854246
Alignment:
Q  21 caaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagcc-aaacaagattgcagctagaca-cgactcccgatctcgaagcaa 118  Q
    ||||| ||||||||||||||||| | |||| |||||||| |||| |  | | |||| ||||||||||| ||||||| | | |||||||||||| ||||||    
T  17854145 caaattagaagggcacccctcacccccggtccaccagaggaacaccctagccagccaaaacaagattgtagctagagaccaactcccgatctcaaagcaa 17854244  T
Q  119 aa 120  Q
    ||    
T  17854245 aa 17854246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 112; Significance: 1e-56; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 22 - 313
Target Start/End: Original strand, 10248632 - 10248924
Alignment:
Q  22 aaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagaca-cgactcccgatctcgaagcaaaa 120  Q
    |||| |||||| |||||||||| | |||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  10248632 aaattagaaggacacccctcacccccggtacaccagagaaacaccaaatcaagccaaacaaaattgcagctagacaccgactcccgatctcgaagcaaaa 10248731  T
Q  121 gtaacagacccaccgaaaaccagcacgcaaaaagtaagacaaatgacataataagtagaagtgcaaacaacaaaccgatcaaaagaaaaaggcatagctc 220  Q
    ||||| | ||||||| |||||| ||| | |||||||||||||| ||||    ||||||  |||||||||||||||| |||||||| || || |  |||||    
T  10248732 gtaactggcccaccggaaaccaccacac-aaaagtaagacaaacgacaaggcaagtagtggtgcaaacaacaaaccaatcaaaaggaatagactaagctc 10248830  T
Q  221 aaacaggcccactccctccaaacaccctaaactccttaaaaactccaaaaaa--caaacaagaactagtaacgacgaacaaagacccgagtaaca 313  Q
    ||   | ||  ||||||||||||||| ||||| |||||| || |||||||||  ||||||||| ||||| |||||||| || |||||||||||||    
T  10248831 aacgggacctgctccctccaaacaccttaaacaccttaacaa-tccaaaaaactcaaacaagagctagtgacgacgaataaggacccgagtaaca 10248924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 27 - 163
Target Start/End: Original strand, 17657086 - 17657222
Alignment:
Q  27 agaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagacac-gactcccgatctcgaagcaaaagtaac 125  Q
    |||||||||||||||| || ||||||| |||||||||| ||||||| |||||| ||||||| |||||| ||| |||||||||||||||||||||| ||||    
T  17657086 agaagggcacccctca-tcccggtacatcagagaaacaccaaatcacgccaaataagattgtagctagccaccgactcccgatctcgaagcaaaattaac 17657184  T
Q  126 agacccaccgaaaaccagcacgcaaaaagtaagacaaa 163  Q
     | |||| || |||||| ||| ||||||||| ||||||    
T  17657185 cggcccatcggaaaccaacacacaaaaagtatgacaaa 17657222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 21 - 160
Target Start/End: Complemental strand, 9519502 - 9519361
Alignment:
Q  21 caaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaac-aagattgcagctaga-cacgactcccgatctcgaagcaa 118  Q
    ||||| || |||||||||||||| | |||||||||||||||| | ||||||||| ||||| ||||||||||||||| | ||||||||||||||||||| |    
T  9519502 caaattagcagggcacccctcacccccggtacaccagagaaaaaccaaatcaagtcaaacaaagattgcagctagaccccgactcccgatctcgaagcca 9519403  T
Q  119 aagtaacagacccaccgaaaaccagcacgcaaaaagtaagac 160  Q
    ||  ||| | || || |||||||||||| ||| | |||||||    
T  9519402 aatgaaccggcctactgaaaaccagcacacaatatgtaagac 9519361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 49 - 160
Target Start/End: Original strand, 24995501 - 24995614
Alignment:
Q  49 gtacaccagagaaacatcaaatcaagccaaacaa-gattgcagctagacac-gactcccgatctcgaagcaaaagtaacagacccaccgaaaaccagcac 146  Q
    |||||||||||||| | ||||||||| ||||||| |||||||||||||| | |||||||||||||||||| |||  ||| | ||||||||||||||||||    
T  24995501 gtacaccagagaaaaaccaaatcaagtcaaacaaagattgcagctagaccccgactcccgatctcgaagccaaatgaaccggcccaccgaaaaccagcac 24995600  T
Q  147 gcaaaaagtaagac 160  Q
     ||| | |||||||    
T  24995601 acaatatgtaagac 24995614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 36630860 - 36630690
Alignment:
Q  1 ggccaaccagactttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaac-aagattgcagctaga-cac 98  Q
    |||| |||||||||||  | ||||| || |||||||||||| | | |||||||||| ||||| | ||||||||| ||||| ||||||||||||||| | |    
T  36630860 ggcccaccagactttagaaccaaattagcagggcacccctcgcccccggtacaccaaagaaaaaccaaatcaagtcaaacaaagattgcagctagacctc 36630761  T
Q  99 gactcccgatctcgaagcaaaagtaacagacccaccgaaaaccagcacgcaaaaagtaagacaaatgacat 169  Q
    | |||||||||||||||| |||  ||| | || ||||||||||| ||| ||| | ||||||| || |||||    
T  36630760 gtctcccgatctcgaagccaaatgaaccggcctaccgaaaaccaacacacaatatgtaagacgaaagacat 36630690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 169
Target Start/End: Original strand, 32066373 - 32066523
Alignment:
Q  21 caaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaac-aagattgcagctaga-cacgactcccgatctcgaagcaa 118  Q
    ||||| || |||||||||||| | | |||||||| ||||||| | ||||||||| ||||| ||||||||| ||||| | ||| |||||||||| |||| |    
T  32066373 caaattagcagggcacccctcgcccccggtacactagagaaaaaccaaatcaagtcaaacaaagattgcaactagaccccgaatcccgatctcaaagcca 32066472  T
Q  119 aagtaacagacccaccgaaaaccagcacgcaaaaagtaagacaaatgacat 169  Q
    ||  ||| | |||||||||||||||||| ||| | ||||||| || |||||    
T  32066473 aatgaaccggcccaccgaaaaccagcacacaatatgtaagacgaaagacat 32066523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 169
Target Start/End: Original strand, 34389083 - 34389233
Alignment:
Q  21 caaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaac-aagattgcagctaga-cacgactcccgatctcgaagcaa 118  Q
    ||||| || |||||||||||| | |  ||||||||||||||| | ||||||||| ||||| || |||||||||||| | ||||||||||||||||||| |    
T  34389083 caaattagcagggcacccctcgcccctggtacaccagagaaaaaccaaatcaagtcaaacaaaaattgcagctagaccccgactcccgatctcgaagcca 34389182  T
Q  119 aagtaacagacccaccgaaaaccagcacgcaaaaagtaagacaaatgacat 169  Q
    ||  ||| | || | ||||||||||||| ||| | ||||||| || |||||    
T  34389183 aatgaaccggcctatcgaaaaccagcacacaatatgtaagacgaaagacat 34389233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 169
Target Start/End: Original strand, 37986936 - 37987086
Alignment:
Q  21 caaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaa-gattgcagctagacac-gactcccgatctcgaagcaa 118  Q
    ||||| || |||||||||||| | | |||||||||||||||| | ||||||||| |||| || || |||| |||||| | |||| ||||||||||||| |    
T  37986936 caaattagcagggcacccctcgcccccggtacaccagagaaaaaccaaatcaagtcaaataaagaatgcaactagaccccgactaccgatctcgaagcca 37987035  T
Q  119 aagtaacagacccaccgaaaaccagcacgcaaaaagtaagacaaatgacat 169  Q
    ||  ||| | |||||||||||||||||| ||| | ||||||| || |||||    
T  37987036 aatgaaccggcccaccgaaaaccagcacacaatatgtaagacgaaagacat 37987086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 6 - 94
Target Start/End: Original strand, 15821442 - 15821529
Alignment:
Q  6 accagactttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctag 94  Q
    |||||||||||  | |||||||| |||||||||||| | ||||||||||||||| |||| || ||||||||||||| ||||| ||||||    
T  15821442 accagactttagaaccaaatcagcagggcacccctcgccctcggtacaccagag-aacaccatatcaagccaaacaggattgtagctag 15821529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 47 - 94
Target Start/End: Original strand, 12198181 - 12198228
Alignment:
Q  47 cggtacaccagagaaacatcaaatcaagccaaacaagattgcagctag 94  Q
    ||||||||||||||||||  | ||||| ||||||||||||||||||||    
T  12198181 cggtacaccagagaaacacaatatcaaaccaaacaagattgcagctag 12198228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 47 - 94
Target Start/End: Original strand, 12442609 - 12442656
Alignment:
Q  47 cggtacaccagagaaacatcaaatcaagccaaacaagattgcagctag 94  Q
    ||||||||||||||||||  | ||||| ||||||||||||||||||||    
T  12442609 cggtacaccagagaaacacaatatcaaaccaaacaagattgcagctag 12442656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 144
Target Start/End: Original strand, 31210329 - 31210393
Alignment:
Q  81 aagattgcagctagacac-gactcccgatctcgaagcaaaagtaacagacccaccgaaaaccagc 144  Q
    |||||||||||||||| | |||||||||||| ||||| |||  ||| | ||||||||||||||||    
T  31210329 aagattgcagctagaccctgactcccgatcttgaagccaaatgaaccggcccaccgaaaaccagc 31210393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 105; Significance: 2e-52; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 8 - 315
Target Start/End: Complemental strand, 25647700 - 25647389
Alignment:
Q  8 cagactttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagacac-gactcccg 106  Q
    ||||||||| || |||||||||||||||||| |||||| |||||||||||||||||| ||||||| ||||||||  ||||||||||||||| ||||||||    
T  25647700 cagactttaggaccaaatcagaagggcacccttcactcccggtacaccagagaaacaccaaatcacgccaaacagaattgcagctagacaccgactcccg 25647601  T
Q  107 atctcgaagcaaaagtaacagacccaccgaaaaccagcacgcaaaaagtaa-gacaaatgacataataagtagaagtgcaaacaacaaaccgatcaaaag 205  Q
     |||||||||||||||||| | |||| || |||||| ||| ||||||  || |||||| ||||| |||   ||  ||||||||||||||| | |||||||    
T  25647600 ttctcgaagcaaaagtaaccggcccatcggaaaccaacacacaaaaaagaatgacaaacgacatgatatacagtggtgcaaacaacaaacaggtcaaaag 25647501  T
Q  206 aaaaaggcatagctcaaacaggcccactccctccaaacaccctaaactccttaaaaactccaaaaa--acaaacaagaactagtaacgacgaacaaagac 303  Q
     |||||||| | |||||   | | | || |||||||||||||||||| |||||| |||   |||||  || ||||||| ||||| ||||||||||| |||    
T  25647500 gaaaaggcacaactcaacgggactcgcttcctccaaacaccctaaacaccttaacaaccttaaaaatcacgaacaagagctagtgacgacgaacaaggac 25647401  T
Q  304 ccgagtaacaaa 315  Q
    ||||||||||||    
T  25647400 ccgagtaacaaa 25647389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 6 - 210
Target Start/End: Original strand, 4463999 - 4464205
Alignment:
Q  6 accagactttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagacac-gactcc 104  Q
    ||||||||||| |  ||||||||||||||||||||||| |||||||||| ||||||||| ||||||| |||| ||||||||||| |||||||| ||||||    
T  4463999 accagactttaaggccaaatcagaagggcacccctcaccctcggtacac-agagaaacaccaaatcacgccacacaagattgcaactagacaccgactcc 4464097  T
Q  105 cgatctcgaagcaaaagtaacagacccaccg-aaaaccagcacgcaaaaagtaagac-aaatgacataataagtagaagtgcaaacaacaaaccgatcaa 202  Q
    ||||||||||||||||||||| | ||||||| ||||||| ||| ||||||| | ||| ||| ||||  |||||  |  ||||||||||||||||||||||    
T  4464098 cgatctcgaagcaaaagtaaccggcccaccgaaaaaccaacacacaaaaaggatgacaaaacgacaagataagcggtggtgcaaacaacaaaccgatcaa 4464197  T
Q  203 aagaaaaa 210  Q
    ||| ||||    
T  4464198 aaggaaaa 4464205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 29 - 310
Target Start/End: Complemental strand, 37123377 - 37123102
Alignment:
Q  29 aagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagaca-cgactcccgatctcgaagcaaaagtaacag 127  Q
    ||||||||||||| |  |||||||| |||||||||| ||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||        
T  37123377 aagggcacccctctccttcggtacatcagagaaacaccaaatcacgccaaacaaaattgcagctagacaccgactcccgatctcgaagcaaaagta---- 37123282  T
Q  128 acccaccgaaaaccagcacgcaaaaagtaagacaaatgacataataagtagaagtgcaaacaacaaaccgatcaaaagaaaaaggcatagctcaaacagg 227  Q
        | ||||||||||||| ||||||||| |||||||| ||| ||  |   | ||||||||||| | | ||||||||| ||||| |  | |||||         
T  37123281 ----atcgaaaaccagcacacaaaaagtatgacaaatg-catgatgtgcgaaggtgcaaacaaccagcagatcaaaaggaaaagactcaactcaatggaa 37123187  T
Q  228 cccactccctccaaacaccctaaactccttaaaaactccaaaaa--acaaacaagaactagtaacgacgaacaaagacccgagta 310  Q
    ||| || ||||||||||||||||||||||||| ||| |||||||  |||||||||| ||||| ||||||||||| ||||||||||    
T  37123186 cccgcttcctccaaacaccctaaactccttaacaaccccaaaaaacacaaacaagagctagtgacgacgaacaaggacccgagta 37123102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 29 - 169
Target Start/End: Original strand, 14755349 - 14755490
Alignment:
Q  29 aagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagaca-cgactcccgatctcgaagcaaaagtaacag 127  Q
    |||||||||||||||  ||||||||||||||||||| |||| |  || ||||||||||||||||||| | |||||||||||||||||||||||||||| |    
T  14755349 aagggcacccctcaccttcggtacaccagagaaacaccaaaacgcgcgaaacaagattgcagctagataccgactcccgatctcgaagcaaaagtaaccg 14755448  T
Q  128 acccaccgaaaaccagcacgcaaaaagtaagacaaatgacat 169  Q
     |||| || ||| |||||| ||||||| | | ||||||||||    
T  14755449 gcccatcggaaatcagcacacaaaaagaatggcaaatgacat 14755490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 7 - 123
Target Start/End: Complemental strand, 14193957 - 14193839
Alignment:
Q  7 ccagactttatgatcaaatcagaagggcacccctcactctcggtacaccagagaa-acatcaaatcaagccaaacaagattgcagctagaca-cgactcc 104  Q
    |||||||||| || ||||||||||||||||||||||||| |||||||||| |||| ||| ||||||| ||||| ||  |||| ||||||||| |||||||    
T  14193957 ccagactttaggaccaaatcagaagggcacccctcactcccggtacaccaaagaacacaccaaatcacgccaagcagaattgtagctagacaccgactcc 14193858  T
Q  105 cgatctcgaagcaaaagta 123  Q
    |||| ||||||||||||||    
T  14193857 cgatatcgaagcaaaagta 14193839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 19176525 - 19176366
Alignment:
Q  1 ggccaaccagactttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaa-gattgcagctagacac- 98  Q
    |||| |||||||||||  | ||||| || ||||||||| |||||| ||||||| |||||||| | ||||| ||| ||||||| |||||||||||||| |     
T  19176525 ggcccaccagactttagaaccaaattagcagggcaccc-tcactcccggtacatcagagaaaaaccaaattaagtcaaacaaagattgcagctagacccc 19176427  T
Q  99 gactcccgatctcgaagcaaaagtaacagacccaccgaaaaccagcacgcaaaaagtaaga 159  Q
    |||||| ||||||||||| |||| |||   |||||||||||||||||| ||| ||||||||    
T  19176426 gactcctgatctcgaagccaaaggaaccagcccaccgaaaaccagcacacaataagtaaga 19176366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 30 - 160
Target Start/End: Complemental strand, 20611777 - 20611645
Alignment:
Q  30 agggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaac-aagattgcagctaga-cacgactcccgatctcgaagcaaaagtaacag 127  Q
    |||||||||||| | | |||||||||||||||| | ||||||||| ||||| ||||||||||||||| | ||||||| ||||||||| | |||  ||| |    
T  20611777 agggcacccctcgcccccggtacaccagagaaaaaccaaatcaagtcaaacaaagattgcagctagaccccgactcctgatctcgaaaccaaatgaaccg 20611678  T
Q  128 acccaccgaaaaccagcacgcaaaaagtaagac 160  Q
    ||||||||||||||||||| ||| | |||||||    
T  20611677 acccaccgaaaaccagcacacaatatgtaagac 20611645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 168
Target Start/End: Original strand, 34475832 - 34475981
Alignment:
Q  21 caaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaac-aagattgcagctaga-cacgactcccgatctcgaagcaa 118  Q
    ||||| || |||||||||||| | | |||||||||||||||| |||||| |||| ||||| || |||||||||||| | ||||||||||||||||||| |    
T  34475832 caaattagcagggcacccctcgcccccggtacaccagagaaaaatcaaaccaagtcaaacaaaaattgcagctagaccccgactcccgatctcgaagcca 34475931  T
Q  119 aagtaacagacccaccgaaaaccagcacgcaaaaagtaagacaaatgaca 168  Q
    ||  ||  | |||| ||||||||||||| | | | |||||||||| ||||    
T  34475932 aatgaatcggcccatcgaaaaccagcacacgatatgtaagacaaaagaca 34475981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 23328428 - 23328527
Alignment:
Q  21 caaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagaca-cgactcccgatctcgaagcaaa 119  Q
    |||||||  |||||||||||| | | ||||||||||||||| || || |||||| ||||||| |||||||||||||| | ||||||||||||||||||||    
T  23328428 caaatcaacagggcacccctcgcccccggtacaccagagaa-caccatatcaagtcaaacaaaattgcagctagacaccaactcccgatctcgaagcaaa 23328526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 169
Target Start/End: Original strand, 2392584 - 2392734
Alignment:
Q  21 caaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaa-gattgcagctagacac-gactcccgatctcgaagcaa 118  Q
    ||||| || |||||||||||| | | ||||||||||||| || | |||| |||| ||||||| |||||||||||||| | |||||||||||| ||||| |    
T  2392584 caaattagcagggcacccctcgcccccggtacaccagagtaaaaccaaaccaagtcaaacaaagattgcagctagaccccgactcccgatcttgaagcca 2392683  T
Q  119 aagtaacagacccaccgaaaaccagcacgcaaaaagtaagacaaatgacat 169  Q
    ||  ||| | |||| ||||||||||||| ||| | ||||||| || |||||    
T  2392684 aatgaaccgtcccatcgaaaaccagcacacaatatgtaagacgaaagacat 2392734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 169
Target Start/End: Original strand, 2394331 - 2394481
Alignment:
Q  21 caaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaa-gattgcagctagacac-gactcccgatctcgaagcaa 118  Q
    ||||| || |||||||||||| | | ||||||||||||| || | |||| |||| ||||||| |||||||||||||| | |||||||||||| ||||| |    
T  2394331 caaattagcagggcacccctcgcccccggtacaccagagtaaaaccaaaccaagtcaaacaaagattgcagctagaccccgactcccgatcttgaagcca 2394430  T
Q  119 aagtaacagacccaccgaaaaccagcacgcaaaaagtaagacaaatgacat 169  Q
    ||  ||| | |||| ||||||||||||| ||| | ||||||| || |||||    
T  2394431 aatgaaccgtcccatcgaaaaccagcacacaatatgtaagacgaaagacat 2394481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 146
Target Start/End: Complemental strand, 47235719 - 47235592
Alignment:
Q  21 caaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaa-gattgcagctagacac-gactcccgatctcgaagcaa 118  Q
    ||||| || |||||||||||| | | ||||||||  |||||| | |||| |||| ||||||| |||||||||||||| | |||||||||||||||||| |    
T  47235719 caaattagcagggcacccctcgcccccggtacactggagaaaaaccaaaccaagtcaaacaaagattgcagctagaccctgactcccgatctcgaagcca 47235620  T
Q  119 aagtaacagacccaccgaaaaccagcac 146  Q
    ||  ||| | |||| |||||||||||||    
T  47235619 aatgaaccggcccatcgaaaaccagcac 47235592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 125
Target Start/End: Original strand, 823520 - 823618
Alignment:
Q  28 gaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagaca-cgactcccgatctcgaagcaaaagtaac 125  Q
    ||||||||||| | || | |||| ||||||||||||| || | ||||||||||||||||||| ||||||| | ||||| ||||| ||||||||| ||||    
T  823520 gaagggcaccctttacccacggtccaccagagaaacaccataacaagccaaacaagattgcaactagacaccaactcctgatcttgaagcaaaattaac 823618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 6 - 125
Target Start/End: Complemental strand, 27398976 - 27398856
Alignment:
Q  6 accagactttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagacac-gactcc 104  Q
    ||||||||||  || ||||  |||||||||||| || | |  ||| ||| ||||||||| || | | ||||||||||||||| ||||||||||  |||||    
T  27398976 accagactttcggaccaaaatagaagggcacccatctcgcctggtccactagagaaacaccatagccagccaaacaagattgtagctagacacaaactcc 27398877  T
Q  105 cgatctcgaagcaaaagtaac 125  Q
    |||||||||||||||| ||||    
T  27398876 cgatctcgaagcaaaaataac 27398856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 235 - 315
Target Start/End: Complemental strand, 14193726 - 14193644
Alignment:
Q  235 cctccaaacaccctaaactccttaaaaactccaaaaaaca--aacaagaactagtaacgacgaacaaagacccgagtaacaaa 315  Q
    |||||||| ||||||||| |||||| ||| ||||||| |   ||||||| ||||| |||||||| || |||||||||||||||    
T  14193726 cctccaaaaaccctaaacaccttaacaaccccaaaaatcgcgaacaagagctagtgacgacgaataaggacccgagtaacaaa 14193644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 134
Target Start/End: Complemental strand, 5556573 - 5556459
Alignment:
Q  21 caaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagaca-cgactcccgatctcgaagcaaa 119  Q
    ||||||| |||||||||||  || |||||| ||| |||||||||||  | | || ||||||||||   ||||||||| | ||| ||||||||||| ||||    
T  5556573 caaatcaaaagggcaccccaaacactcggtccacgagagaaacatcgtagccagacaaacaagatgttagctagacaccaacttccgatctcgaatcaaa 5556474  T
Q  120 agtaacagacccacc 134  Q
    |||||| | ||||||    
T  5556473 agtaaccggcccacc 5556459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 158
Target Start/End: Complemental strand, 47945663 - 47945577
Alignment:
Q  73 agccaaacaagattgcagctagacacga-ctcccgatctcgaagcaaaagtaacagacccaccgaaaaccagcacgcaaaaagtaag 158  Q
    |||||||||||| ||| ||||||| | | |||||||||||||||| |||||||| | | ||||  || ||||||| |||||||||||    
T  47945663 agccaaacaagaatgctgctagacgccaactcccgatctcgaagctaaagtaaccggcacaccagaatccagcacacaaaaagtaag 47945577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 104; Significance: 8e-52; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 16 - 315
Target Start/End: Original strand, 20701876 - 20702178
Alignment:
Q  16 atgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagaca-cgactcccgatctcgaa 114  Q
    |||| ||||||||||||||||||||||| | |||||||||||||||| | ||||||| |||||||||  ||||||||||||| ||| |||||||||| ||    
T  20701876 atgaccaaatcagaagggcacccctcacccccggtacaccagagaaaaaccaaatcacgccaaacaaatttgcagctagacaccgaatcccgatctcaaa 20701975  T
Q  115 gcaaaagtaacagacccaccgaaaaccagcacgcaaaaagtaagacaaatgacataataagtagaagtgcaaacaacaaaccgatcaaaagaaaaaggca 214  Q
    ||||||||||| | |||| || |||||| ||| ||||||||| ||||||  |||  ||| |  | |||||||||||||||| ||||||| | |||| | |    
T  20701976 gcaaaagtaaccggcccatcggaaaccatcacacaaaaagtaggacaaacaacaagatacgcggtagtgcaaacaacaaacagatcaaacggaaaaagta 20702075  T
Q  215 tagctcaaacaggcccactccctccaaacaccctaaactccttaaaaactccaaaaaa--caaacaagaactagtaacgacgaacaaagacccgagtaac 312  Q
      ||||||   | ||| || |||||||||||||||||| |||||| ||  ||||||||  || |||||||||||| ||||||||||| ||||||||||||    
T  20702076 ccgctcaacgggacccgcttcctccaaacaccctaaacaccttaacaatcccaaaaaatgcatacaagaactagtgacgacgaacaaggacccgagtaac 20702175  T
Q  313 aaa 315  Q
    |||    
T  20702176 aaa 20702178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 3880641 - 3880835
Alignment:
Q  1 ggccaaccagactttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagaca-cg 99  Q
    |||| |||| |||||| || ||||||||||||||||| ||||| ||||||| |||||||||||| ||||||| |||||||||||| ||||||||||| ||    
T  3880641 ggcccaccaaactttaggaccaaatcagaagggcacctctcaccctcggtaaaccagagaaacaccaaatcatgccaaacaagatagcagctagacaccg 3880740  T
Q  100 actcccgatctcgaagcaaaagtaacagacccaccgaaaaccagcacgcaaaaagtaagacaaatgacataataagtagaagtgcaaacaacaaa 194  Q
    |||||||||||| ||||||||||||| | ||||||| |||||||||  ||||||||  |||||| ||||| ||| || |  ||||||||||||||    
T  3880741 actcccgatctcaaagcaaaagtaactggcccaccggaaaccagcaaacaaaaagtctgacaaaggacatgatatgtggtggtgcaaacaacaaa 3880835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 21 - 142
Target Start/End: Original strand, 16510379 - 16510502
Alignment:
Q  21 caaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaa-gattgcagctagacac-gactcccgatctcgaagcaa 118  Q
    ||||| || |||||||||||  | |||||||||||||||||| | || |||||| ||||||| |||||||||||||| | ||||||||||||||||||||    
T  16510379 caaattagcagggcaccccttgccctcggtacaccagagaaaaaccatatcaagtcaaacaaagattgcagctagaccccgactcccgatctcgaagcaa 16510478  T
Q  119 aagtaacagacccaccgaaaacca 142  Q
    ||||||| | |||| |||||||||    
T  16510479 aagtaaccggcccaacgaaaacca 16510502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 32935397 - 32935556
Alignment:
Q  1 ggccaaccagactttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagaca-cg 99  Q
    |||| ||||||||| | || ||||||||||||| ||||||||| | || | || || ||||||| || | ||||||||| ||||||||||||||||| |     
T  32935397 ggcccaccagacttcaggaccaaatcagaagggaacccctcacccccgatccatcatagaaacaccataacaagccaaagaagattgcagctagacacca 32935496  T
Q  100 actcccgatctcgaagcaaaagtaacagacccaccgaaaaccagcacgcaaaaagtaaga 159  Q
    ||| | |||||| ||||||||||||| ||||||||| || ||||||| ||| | ||||||    
T  32935497 acttctgatctcaaagcaaaagtaaccgacccaccggaatccagcacacaatatgtaaga 32935556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 142
Target Start/End: Original strand, 15132610 - 15132722
Alignment:
Q  30 agggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagacac-gactcccgatctcgaagcaaaagtaacaga 128  Q
    |||||||||||| | | | ||||| ||||||| || || |||||| |||||| |||||||||||| ||| ||||||||||||||||||||||||||| |     
T  15132610 agggcacccctcgcccccagtacatcagagaa-caccatatcaagtcaaacaggattgcagctagtcaccgactcccgatctcgaagcaaaagtaaccgg 15132708  T
Q  129 cccaccgaaaacca 142  Q
    ||||||||||||||    
T  15132709 cccaccgaaaacca 15132722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 3117496 - 3117355
Alignment:
Q  21 caaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaa--caagattgcagctaga-cacgactcccgatctcgaagca 117  Q
    ||||| || |||||||||||| | | ||| |||||||||||| | ||||||||| ||||   ||||||||| ||||| | |||||||| ||||||||||     
T  3117496 caaattagcagggcacccctcgcccccggaacaccagagaaaaaccaaatcaagtcaaaacaaagattgcaactagaccccgactcccaatctcgaagcc 3117397  T
Q  118 aaagtaacagacccaccgaaaaccagcacgcaaaaagtaaga 159  Q
    |||  ||| | ||||| |||||||| ||| ||| | ||||||    
T  3117396 aaatgaaccggcccactgaaaaccaacacacaatatgtaaga 3117355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 169
Target Start/End: Complemental strand, 12794037 - 12793969
Alignment:
Q  100 actcccgatctcgaagcaaaagtaacagacccaccgaaaaccagcacgcaaaaagtaagacaaatgacat 169  Q
    |||||||||||||||||||||| | | |||||| |  || ||||||| ||| ||||||||||||||||||    
T  12794037 actcccgatctcgaagcaaaaggacc-gacccatcagaatccagcacacaataagtaagacaaatgacat 12793969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 42196 - 42510
Alignment:
Q  1 ggccaaccagactttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagcc-aaacaagattgcagctagaca-c 98  Q
    |||| ||||||||||| ||  ||||||||||||||||||||||  | |||| |||||||||||||||||| ||||| |||||||| |||||||||||| |    
T  42196 ggcccaccagactttaggactaaatcagaagggcacccctcacctttggtataccagagaaacatcaaattaagccaaaacaagaatgcagctagacatc 42295  T
Q  99 gactcccgatctcgaagcaaaagtaacagacccaccgaaaaccagcacgcaaaaagtaagacaaatgacataataagtagaagtgcaaacaacaaaccga 198  Q
    |||||||||||||||||||||| |||| |||||| ||  ||||||||  |||| ||||||||||| ||||| |||  | |  |||||||||||||||  |    
T  42296 gactcccgatctcgaagcaaaattaaccgacccatcgggaaccagcatacaaacagtaagacaaacgacatgatagatggtggtgcaaacaacaaacata 42395  T
Q  199 tcaaaagaaaaaggcatagctcaaacaggcccactccctccaaacaccctaaactccttaaaaactccaaaaa-acaaacaagaactagtaacgacg-aa 296  Q
    || |||| ||||||| ||||||||  ||  |  ||||||||||||||| ||||| | |||| ||| |||||||  ||||||||| ||||| |||||| ||    
T  42396 tccaaaggaaaaggcttagctcaatgagatcggctccctccaaacaccataaacactttaacaaccccaaaaacgcaaacaagagctagtgacgacgaaa 42495  T
Q  297 caaagacccgagtaa 311  Q
    ||| |||||||||||    
T  42496 caaggacccgagtaa 42510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 7 - 313
Target Start/End: Complemental strand, 36724 - 36412
Alignment:
Q  7 ccagactttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagacac-gactccc 105  Q
    |||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||| ||||||     
T  36724 ccagactttaggaccaaatcagaagggcacccctcactctcggtacaccagagaaacaccaaatcacgccaaacaaaattgcagctagacaccgactcct 36625  T
Q  106 gatctcgaagcaaaagtaacagacccaccgaaaaccagcacgcaaaaagtaa-gacaaatgacataataagtagaagtgcaaacaacaaaccgatcaaaa 204  Q
    ||||||||| ||||| |||  | ||||||| |||||| ||| ||||||  || |||||||||||| ||| |  |  |||||||||||||||  |||||||    
T  36624 gatctcgaatcaaaattaatcggcccaccggaaaccaacacacaaaaaagaatgacaaatgacatgatatgcggtggtgcaaacaacaaacatatcaaaa 36525  T
Q  205 gaaaaaggcatagctcaaacaggcccactccctccaaacaccctaaa-ctccttaaaaactccaaaaaaca---aacaagaactagtaacgacgaacaaa 300  Q
    | ||||| || |||||||  ||  || || |||| |||||||||||| | |||||| ||| ||||||||     ||||||| ||| | |||||||||||     
T  36524 ggaaaagtcacagctcaacgagatccgcttcctctaaacaccctaaaacaccttaacaaccccaaaaaaacgtgaacaagagctactgacgacgaacaag 36425  T
Q  301 gacccgagtaaca 313  Q
    |||||||||||||    
T  36424 gacccgagtaaca 36412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 3e-51; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 1269506 - 1269192
Alignment:
Q  1 ggccaaccagactttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagcc-aaacaagattgcagctagaca-c 98  Q
    |||| ||||||||||| ||  ||||||||||||||||||||||  | |||| |||||||||||||||||| ||||| |||||||| |||||||||||| |    
T  1269506 ggcccaccagactttaggactaaatcagaagggcacccctcacctttggtataccagagaaacatcaaattaagccaaaacaagaatgcagctagacatc 1269407  T
Q  99 gactcccgatctcgaagcaaaagtaacagacccaccgaaaaccagcacgcaaaaagtaagacaaatgacataataagtagaagtgcaaacaacaaaccga 198  Q
    |||||||||||||||||||||| |||| |||||| ||  ||||||||  |||| ||||||||||| ||||| |||  | |  |||||||||||||||  |    
T  1269406 gactcccgatctcgaagcaaaattaaccgacccatcgggaaccagcatacaaacagtaagacaaacgacatgatagatggtggtgcaaacaacaaacata 1269307  T
Q  199 tcaaaagaaaaaggcatagctcaaacaggcccactccctccaaacaccctaaactccttaaaaactccaaaaa-acaaacaagaactagtaacgacg-aa 296  Q
    || |||| ||||||| ||||||||  ||  |  ||||||||||||||| ||||| | |||| ||| |||||||  ||||||||| ||||| |||||| ||    
T  1269306 tccaaaggaaaaggcttagctcaatgagatcggctccctccaaacaccataaacactttaacaaccccaaaaacgcaaacaagagctagtgacgacgaaa 1269207  T
Q  297 caaagacccgagtaa 311  Q
    ||| |||||||||||    
T  1269206 caaggacccgagtaa 1269192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 6 - 313
Target Start/End: Original strand, 41086851 - 41087159
Alignment:
Q  6 accagactttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagacac-gactcc 104  Q
    |||||||| ||||| |||||||||||||||||| |||| |  |||||||||||||| || ||||||| ||||||||| |||| |||| ||||| || |||    
T  41086851 accagactatatgaccaaatcagaagggcaccc-tcacccctggtacaccagagaa-caccaaatcacgccaaacaaaattgtagctggacaccgattcc 41086948  T
Q  105 cgatctcgaagcaaaagtaacagacccaccgaaaaccagcacgcaaaaagtaagacaaatgacataataagtagaagtgcaaacaacaaaccgatcaaaa 204  Q
    ||||||| ||||||||||||  |  |||||| ||||| |||| ||| ||||| |||||| ||||  |||||  | ||||||| |||||||| |||||| |    
T  41086949 cgatctcaaagcaaaagtaatcggtccaccggaaacctgcacacaacaagtaggacaaacgacaagataagcggtagtgcaagcaacaaacagatcaata 41087048  T
Q  205 gaaaaaggcatagctcaaacaggcccactccctccaaacaccctaaactccttaaaaactccaaaaaa--caaacaagaactagtaacgacgaacaaaga 302  Q
    | ||||||| ||||||||   | ||| || ||||||||||||||| || |||||| ||| ||||||||  || |||||| |||||||||||||| || ||    
T  41087049 ggaaaaggcttagctcaacgggacccgctacctccaaacaccctagacaccttaacaaccccaaaaaacgcatacaagagctagtaacgacgaataagga 41087148  T
Q  303 cccgagtaaca 313  Q
    |||||||||||    
T  41087149 cccgagtaaca 41087159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 14106582 - 14106757
Alignment:
Q  1 ggccaaccagactttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagaca-cg 99  Q
    |||| ||||||||||| || |||||||| |||||||||||| | || ||||||  |||| |||| ||||||||| |||||| |||||||||||| || ||    
T  14106582 ggcccaccagactttaggaccaaatcagcagggcacccctcgccctgggtacatgagaggaacaccaaatcaagtcaaacaggattgcagctagtcaccg 14106681  T
Q  100 actcccgatctcgaagcaaaagtaacagacccaccgaaaaccagcacgcaaaaagtaagacaaatgacataataag 175  Q
    ||||||  |||||||||||||||||| | ||||||| |||||| ||| ||| ||| |||||| | ||||| |||||    
T  14106682 actccctgtctcgaagcaaaagtaaccggcccaccggaaaccaacacacaataagcaagacagacgacatgataag 14106757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 21 - 168
Target Start/End: Original strand, 37770719 - 37770867
Alignment:
Q  21 caaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagacacga-ctcccgatctcgaagcaaa 119  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||  |||||  ||||||    ||||| ||||||||| | |||||||||||||||||||    
T  37770719 caaatcagatgggcacccctcaccctcggtacaccagagaaacactaaatcgcgccaaatcgaattgctgctagacaccaactcccgatctcgaagcaaa 37770818  T
Q  120 agtaacagacccaccgaaaaccagcacgcaaaaagtaagacaaatgaca 168  Q
    |||||| | |||||||| ||||||||  ||||||| | |||||| ||||    
T  37770819 agtaaccggcccaccgataaccagcaaacaaaaagcatgacaaacgaca 37770867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 17105414 - 17105275
Alignment:
Q  21 caaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagac-acgactcccgatctcgaagcaaa 119  Q
    |||||||| |||||||||||||| |  ||||||||| ||||||| | ||| ||| |||||||| ||||||||||||  |||||||  ||||| |||||||    
T  17105414 caaatcagtagggcacccctcacccctggtacaccaaagaaacacctaattaagtcaaacaaggttgcagctagacgccgactccttatctccaagcaaa 17105315  T
Q  120 agtaacagacccaccgaaaaccagcacgcaaaaagtaaga 159  Q
    |||||| ||||||||| |||||||||| ||| | ||||||    
T  17105314 agtaaccgacccaccggaaaccagcacacaatatgtaaga 17105275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 169
Target Start/End: Original strand, 39338943 - 39339093
Alignment:
Q  21 caaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaag-attgcagctagacac-gactcccgatctcgaagcaa 118  Q
    ||||| || |||||||||||| | | |||||||||| ||||| | ||||||||| |||||||  ||||||||||||| | |||||||||||||||||| |    
T  39338943 caaattagcagggcacccctcgcccccggtacaccaaagaaaaaccaaatcaagtcaaacaaatattgcagctagaccccgactcccgatctcgaagcca 39339042  T
Q  119 aagtaacagacccaccgaaaaccagcacgcaaaaagtaagacaaatgacat 169  Q
    ||  ||| | |||||||||||||||||| ||| | ||||||| || |||||    
T  39339043 aatgaactggcccaccgaaaaccagcacacaatatgtaagacgaaagacat 39339093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 119
Target Start/End: Complemental strand, 13337290 - 13337178
Alignment:
Q  8 cagactttatgatcaaatcagaagggcacccc-tcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagaca-cgactccc 105  Q
    ||||||||| | |||||||||||||||||||| |||| || ||||||||||||||||| ||||||| |||| | |||||||| |||||||| |||||| |    
T  13337290 cagactttaaggtcaaatcagaagggcaccccctcaccct-ggtacaccagagaaacaccaaatcacgccagataagattgctgctagacaccgactctc 13337192  T
Q  106 gatctcgaagcaaa 119  Q
     |||||||||||||    
T  13337191 aatctcgaagcaaa 13337178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 6 - 146
Target Start/End: Complemental strand, 7874309 - 7874169
Alignment:
Q  6 accagactttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagaca-cgactcc 104  Q
    |||||||||||  | |||||||| ||||||||| || | |||||||||| |||| |||| || |||||| ||| || ||||||||||||||| | |||||    
T  7874309 accagactttagaaccaaatcagcagggcacccatcgccctcggtacactagag-aacaccatatcaagtcaagcaggattgcagctagacaccaactcc 7874211  T
Q  105 cgatctcgaagcaaaagtaacagacccaccgaaaaccagcac 146  Q
    ||||||||||||||||  ||| | ||||||| | ||||||||    
T  7874210 cgatctcgaagcaaaaaaaaccggcccaccggacaccagcac 7874169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 75 - 159
Target Start/End: Original strand, 15126535 - 15126620
Alignment:
Q  75 ccaaacaagattgcagctagacacga-ctcccgatctcgaagcaaaagtaacagacccaccgaaaaccagcacgcaaaaagtaaga 159  Q
    |||||||||| ||||||||||| | | ||||||||||||||||||||||||| ||||||||  || | ||||| ||||||||||||    
T  15126535 ccaaacaagaatgcagctagacgccaactcccgatctcgaagcaaaagtaactgacccaccagaatctagcacacaaaaagtaaga 15126620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 125
Target Start/End: Original strand, 10173683 - 10173762
Alignment:
Q  48 ggtacaccagagaaacatcaa-atcaagccaaacaagattgcagctagaca-cgactcccgatctcgaagcaaaagtaac 125  Q
    ||||||||||||||||| |   ||||||||||||||||||||||||||||| ||||| |||||| |||| ||||||||||    
T  10173683 ggtacaccagagaaacaccgttatcaagccaaacaagattgcagctagacaccgacttccgatcccgaaacaaaagtaac 10173762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 23 - 124
Target Start/End: Complemental strand, 15710708 - 15710606
Alignment:
Q  23 aatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagacacga-ctcccgatctcgaagcaaaag 121  Q
    |||||||||||||||||||||   |||| |||||||||||||  | |   ||||||||||||||||| ||| |||| | ||||||||||| |||||||||    
T  15710708 aatcagaagggcacccctcacctccggttcaccagagaaacactatagtcagccaaacaagattgcaactaaacaccaactcccgatctcaaagcaaaag 15710609  T
Q  122 taa 124  Q
    |||    
T  15710608 taa 15710606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 169
Target Start/End: Original strand, 16952452 - 16952609
Alignment:
Q  12 ctttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagacacga-ctcccgatct 110  Q
    ||||| || ||| ||||||||| |||||| || | |||| ||| |||||||||  | ||||| || |||||||||||| ||| |||| | ||| ||||||    
T  16952452 ctttaggaacaattcagaagggaacccctaaccc-cggtccactagagaaacacgatatcaaacccaacaagattgcaactacacacaaactctcgatct 16952550  T
Q  111 cgaagcaaaagtaacagacccaccgaaaaccagcacgcaaaaagtaagacaaatgacat 169  Q
    ||||| |||||||||    ||| ||||||||||||| ||| | ||||||||||||||||    
T  16952551 cgaagtaaaagtaaccagtccatcgaaaaccagcacacaatatgtaagacaaatgacat 16952609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 169
Target Start/End: Original strand, 17023117 - 17023274
Alignment:
Q  12 ctttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagacacga-ctcccgatct 110  Q
    ||||| || ||| ||||||||| |||||| || | |||| ||| |||||||||  | ||||| || |||||||||||| ||| |||| | ||| ||||||    
T  17023117 ctttaggaacaattcagaagggaacccctaaccc-cggtccactagagaaacacgatatcaaacccaacaagattgcaactacacacaaactctcgatct 17023215  T
Q  111 cgaagcaaaagtaacagacccaccgaaaaccagcacgcaaaaagtaagacaaatgacat 169  Q
    ||||| |||||||||    ||| ||||||||||||| ||| | ||||||||||||||||    
T  17023216 cgaagtaaaagtaaccagtccatcgaaaaccagcacacaatatgtaagacaaatgacat 17023274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 169
Target Start/End: Original strand, 17060423 - 17060580
Alignment:
Q  12 ctttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagacacga-ctcccgatct 110  Q
    ||||| || ||| ||||||||| |||||| || | |||| ||| |||||||||  | ||||| || |||||||||||| ||| |||| | ||| ||||||    
T  17060423 ctttaggaacaattcagaagggaacccctaaccc-cggtccactagagaaacacgatatcaaacccaacaagattgcaactacacacaaactctcgatct 17060521  T
Q  111 cgaagcaaaagtaacagacccaccgaaaaccagcacgcaaaaagtaagacaaatgacat 169  Q
    ||||| |||||||||    ||| ||||||||||||| ||| | ||||||||||||||||    
T  17060522 cgaagtaaaagtaaccagtccatcgaaaaccagcacacaatatgtaagacaaatgacat 17060580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 169
Target Start/End: Complemental strand, 17079181 - 17079024
Alignment:
Q  12 ctttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagacacga-ctcccgatct 110  Q
    ||||| || ||| ||||||||| |||||| || | |||| ||| |||||||||  | ||||| || |||||||||||| ||| |||| | ||| ||||||    
T  17079181 ctttaggaacaattcagaagggaacccctaaccc-cggtccactagagaaacacgatatcaaacccaacaagattgcaactacacacaaactctcgatct 17079083  T
Q  111 cgaagcaaaagtaacagacccaccgaaaaccagcacgcaaaaagtaagacaaatgacat 169  Q
    ||||| |||||||||    ||| ||||||||||||| ||| | ||||||||||||||||    
T  17079082 cgaagtaaaagtaaccagtccatcgaaaaccagcacacaatatgtaagacaaatgacat 17079024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 73 - 124
Target Start/End: Complemental strand, 2062859 - 2062807
Alignment:
Q  73 agccaaacaagattgcagctagacacga-ctcccgatctcgaagcaaaagtaa 124  Q
    |||||||||||| ||||||||||||| | ||||||||||||||||||||||||    
T  2062859 agccaaacaagaatgcagctagacaccaactcccgatctcgaagcaaaagtaa 2062807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 53 - 159
Target Start/End: Complemental strand, 10524068 - 10523960
Alignment:
Q  53 accagagaaacatcaaatcaagccaaacaa-gattgcagctaga-cacgactcccgatctcgaagcaaaagtaacagacccaccgaaaaccagcacgcaa 150  Q
    |||||||||| | ||||||||| ||||||| ||||||| ||||| | ||||||||||||||||||| |||  ||| |  ||||||||||||||||| |||    
T  10524068 accagagaaaaaccaaatcaagtcaaacaaagattgcaactagagcccgactcccgatctcgaagccaaatgaaccggtccaccgaaaaccagcacacaa 10523969  T
Q  151 aaagtaaga 159  Q
     | ||||||    
T  10523968 tatgtaaga 10523960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 125
Target Start/End: Complemental strand, 29487149 - 29487030
Alignment:
Q  6 accagactttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagacacga-ctcc 104  Q
    ||||||||| | ||||||| |||| |||||||||| || | | || ||||||||||||| | |  |  |||| ||||||  |||||||||||| | ||||    
T  29487149 accagacttcaagatcaaaccagacgggcacccctaacccccagtccaccagagaaacaccgagccc-gccagacaagaaagcagctagacaccaactcc 29487051  T
Q  105 cgatctcgaagcaaaagtaac 125  Q
    |||||||||||||||||||||    
T  29487050 cgatctcgaagcaaaagtaac 29487030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 134
Target Start/End: Original strand, 22885263 - 22885324
Alignment:
Q  74 gccaaacaagattgcagctagacacga-ctcccgatctcgaagcaaaagtaacagacccacc 134  Q
    ||||||||||   |||||||||||| | ||||||||||||||||||||||||| | ||||||    
T  22885263 gccaaacaaggaagcagctagacaccaactcccgatctcgaagcaaaagtaaccggcccacc 22885324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 309
Target Start/End: Original strand, 37770934 - 37771012
Alignment:
Q  235 cctccaaacaccctaaa-ctccttaaaaactccaaaaaa---caaacaagaactagtaacgacgaacaaagacccgagt 309  Q
    ||||||||||||||||| | |||||| ||| ||||||||   ||||||| | ||||| ||||||||||| |||||||||    
T  37770934 cctccaaacaccctaaaacaccttaacaaccccaaaaaaacgcaaacaaaagctagtgacgacgaacaaggacccgagt 37771012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 19406 - 19183
Alignment:
Q  1 ggccaaccagactttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagcc-aaacaagattgcagctagaca-c 98  Q
    |||| ||||||||||| || |||||||||||||||||||||||  | |||| |||||||||||||||||| ||||| |||||||| |||||||||||| |    
T  19406 ggcccaccagactttaggaccaaatcagaagggcacccctcacctttggtataccagagaaacatcaaattaagccaaaacaagaatgcagctagacacc 19307  T
Q  99 gactcccgatctcgaagcaaaagtaacagacccaccgaaaaccagcacgcaaaaagtaagacaaatgacataataagtagaagtgcaaacaacaaaccga 198  Q
    |||||||||||||||||||||| |||| |||||| ||  ||||||||  |||| ||||||||||| ||||| |||  | |  |||||||||||||||  |    
T  19306 gactcccgatctcgaagcaaaattaaccgacccatcgggaaccagcatacaaacagtaagacaaacgacatgatagatggtggtgcaaacaacaaacata 19207  T
Q  199 tcaaaagaaaaaggcatagctcaa 222  Q
    || |||| |||||||  |||||||    
T  19206 tctaaaggaaaaggctcagctcaa 19183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 7e-40; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 6 - 140
Target Start/End: Original strand, 53823484 - 53823619
Alignment:
Q  6 accagactttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagaca-cgactcc 104  Q
    |||||||||||||| |||||||||||||||||||||||   |||||||||||||||||| ||| ||||||||| ||||||||||| |||||| |||||||    
T  53823484 accagactttatgaccaaatcagaagggcacccctcacctccggtacaccagagaaacaccaagtcaagccaagcaagattgcagttagacaccgactcc 53823583  T
Q  105 cgatctcgaagcaaaagtaacagacccaccgaaaac 140  Q
    ||||||||||||||||||||| | |||||| |||||    
T  53823584 cgatctcgaagcaaaagtaaccggcccaccaaaaac 53823619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 6 - 212
Target Start/End: Complemental strand, 25753190 - 25752983
Alignment:
Q  6 accagactttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagaca-cgactcc 104  Q
    ||||||||||| || ||||| ||| |||||| ||||||   |||||||||||||||||| || |||| |||||||||||||||||||||||| |||||||    
T  25753190 accagactttaggaccaaataagacgggcactcctcacctccggtacaccagagaaacaccacatcacgccaaacaagattgcagctagacaccgactcc 25753091  T
Q  105 cgatctcgaagcaaaagtaacagacccaccgaaaaccagcacgcaaaaagtaagacaaatgacataataagtagaagtgcaaacaacaaaccgatcaaaa 204  Q
    |||||||||||||||| |||    |||| || |||||||||  ||||||||||| |||| ||||||||| || |  ||||||||||||||   |||||||    
T  25753090 cgatctcgaagcaaaattaagctgcccatcggaaaccagcaaacaaaaagtaaggcaaacgacataatatgtggttgtgcaaacaacaaatatatcaaaa 25752991  T
Q  205 gaaaaagg 212  Q
    | ||||||    
T  25752990 ggaaaagg 25752983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 22811218 - 22811500
Alignment:
Q  1 ggccaaccagactttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagacacga 100  Q
    |||| ||||||||||| || |||||||||||||||| |||||| | || ||||||||||||||| |||||||  |||||||| |||||| |||||||| |    
T  22811218 ggcccaccagactttaagaccaaatcagaagggcactcctcaccc-cgatacaccagagaaacaccaaatcacaccaaacaaaattgcaactagacacca 22811316  T
Q  101 c-tcccgatctcgaagcaaaagtaacagacccaccgaaaaccagcacgc-aaaaagtaagacaaatgacataataagtagaagtgcaaac-aacaaaccg 197  Q
      | |||||||||||||||||||||| |||||||||||||||||||| | |||||| | |||||| ||||| ||| |  | ||||||||| || ||||      
T  22811317 agttccgatctcgaagcaaaagtaaccgacccaccgaaaaccagcacacaaaaaagaatgacaaacgacat-atatgcggtagtgcaaacaaaaaaacat 22811415  T
Q  198 atcaaaagaaaaaggcatagctcaaacaggcccactccctccaaacaccctaaactccttaaaaactccaaaaaa-caaacaaga 281  Q
    |||||||| ||||||| ||| ||||   | ||| || ||||||||| |||||||| |||||| |||  ||||||| |||||||||    
T  22811416 atcaaaaggaaaaggcttagatcaacgggacccgcttcctccaaactccctaaacaccttaacaaccacaaaaaagcaaacaaga 22811500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 6 - 125
Target Start/End: Complemental strand, 19673119 - 19672999
Alignment:
Q  6 accagactttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagacac-gactcc 104  Q
    ||||||||||| || |||| |||||||||||||||||| | || |  |||||||||| |||| |||||||||||||||||||||||||||||| ||||||    
T  19673119 accagactttaggaccaaaacagaagggcacccctcacccccgatcaaccagagaaatatcatatcaagccaaacaagattgcagctagacactgactcc 19673020  T
Q  105 cgatctcgaagcaaaagtaac 125  Q
    |||||||||||||||||||||    
T  19673019 cgatctcgaagcaaaagtaac 19672999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 6 - 135
Target Start/End: Original strand, 19815287 - 19815417
Alignment:
Q  6 accagactttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagaca-cgactcc 104  Q
    ||||||||||| || |||| |||||||||||||||||| | ||||  |||||| ||| |  | ||||||||||||||||||||||||||||| ||||||     
T  19815287 accagactttaggaccaaaacagaagggcacccctcacccccggtcaaccagaaaaatacaatatcaagccaaacaagattgcagctagacaccgactct 19815386  T
Q  105 cgatctcgaagcaaaagtaacagacccaccg 135  Q
    ||||||||||||||||||||| | |||||||    
T  19815387 cgatctcgaagcaaaagtaactggcccaccg 19815417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 24 - 119
Target Start/End: Original strand, 39421094 - 39421190
Alignment:
Q  24 atcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagaca-cgactcccgatctcgaagcaaa 119  Q
    |||||||||||||||||||| ||| |||||  ||||||||| ||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||    
T  39421094 atcagaagggcacccctcaccctcagtacattagagaaacaccaaatcacgccaaacaagattgcagctagacaccgattcccgatctcgaagcaaa 39421190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 21 - 169
Target Start/End: Complemental strand, 30964444 - 30964294
Alignment:
Q  21 caaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaac-aagattgcagctaga-cacgactcccgatctcgaagcaa 118  Q
    ||||| || |||||||||||| | |||||||||||||||||| | ||||||||| ||||| ||||||||||||||| | ||||| ||||||||||||| |    
T  30964444 caaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaatcaagtcaaacaaagattgcagctagaccccgacttccgatctcgaagcca 30964345  T
Q  119 aagtaacagacccaccgaaaaccagcacgcaaaaagtaagacaaatgacat 169  Q
    ||  ||| | |||| ||||||||||||| ||| ||||||||| || |||||    
T  30964344 aatgaaccggcccatcgaaaaccagcacacaataagtaagacgaaagacat 30964294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 31050720 - 31050894
Alignment:
Q  1 ggccaaccagactttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagacac-g 99  Q
    |||| |||||||||||  | |||||||| |||||||||||| | | ||||||| || |||| || || |||||| |||||| |||||||||||| ||| |    
T  31050720 ggcccaccagactttagaaccaaatcagtagggcacccctcgcccccggtacatcaaagaa-caccatatcaagtcaaacaggattgcagctagtcaccg 31050818  T
Q  100 actcccgatctcgaagcaaaagtaacagacccaccgaaaaccagcacgcaaaaagtaagacaaatgacataataag 175  Q
    ||||||| |||||||||||||||||| | ||||||| |||||| |||  || ||| |||||| | ||||| |||||    
T  31050819 actcccggtctcgaagcaaaagtaaccggcccaccggaaaccaacacataataagcaagacagacgacatgataag 31050894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 8255050 - 8254880
Alignment:
Q  1 ggccaaccagactttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaac-aagattgcagctaga-cac 98  Q
    |||| |||||||||||  | ||||| || |||||||||||| | | |||||||||||||||| | |||||||||  |||| |||||| |||||||| | |    
T  8255050 ggcccaccagactttagtaccaaattagcagggcacccctcgcccccggtacaccagagaaaaaccaaatcaagtgaaacaaagattacagctagacctc 8254951  T
Q  99 gactcccgatctcgaagcaaaagtaacagacccaccgaaaaccagcacgcaaaaagtaagacaaatgacat 169  Q
    |||||||||||||||||| |||  ||| | |||||||||||||| ||| ||| | ||||||| || |||||    
T  8254950 gactcccgatctcgaagccaaaagaaccggcccaccgaaaaccaacacacaatatgtaagacgaaagacat 8254880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 8268468 - 8268298
Alignment:
Q  1 ggccaaccagactttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaac-aagattgcagctaga-cac 98  Q
    |||| |||||||||||  | ||||| || |||||||||||| | | |||||||||||||||| | |||||||||  |||| |||||| |||||||| | |    
T  8268468 ggcccaccagactttagtaccaaattagcagggcacccctcgcccccggtacaccagagaaaaaccaaatcaagtgaaacaaagattacagctagacctc 8268369  T
Q  99 gactcccgatctcgaagcaaaagtaacagacccaccgaaaaccagcacgcaaaaagtaagacaaatgacat 169  Q
    |||||||||||||||||| |||  ||| | |||||||||||||| ||| ||| | ||||||| || |||||    
T  8268368 gactcccgatctcgaagccaaaagaaccggcccaccgaaaaccaacacacaatatgtaagacgaaagacat 8268298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 12 - 81
Target Start/End: Complemental strand, 48098345 - 48098276
Alignment:
Q  12 ctttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaaca 81  Q
    |||||||| ||||||||||||||||| ||||| ||||||||||| |||||||| |||||||  |||||||    
T  48098345 ctttatgaccaaatcagaagggcacctctcaccctcggtacacctgagaaacaccaaatcacaccaaaca 48098276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 119
Target Start/End: Complemental strand, 2825786 - 2825688
Alignment:
Q  21 caaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagaca-cgactcccgatctcgaagcaaa 119  Q
    |||||||| || ||||||||| | ||||||||||||||| |||| || |||||| |||||| ||||||||||||||| | |||| | |||||||||||||    
T  2825786 caaatcagcagagcacccctcgccctcggtacaccagag-aacaccatatcaagtcaaacatgattgcagctagacaccaactctcaatctcgaagcaaa 2825688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 47 - 169
Target Start/End: Complemental strand, 4305702 - 4305578
Alignment:
Q  47 cggtacaccagagaaacatcaaatcaagccaaacaa-gattgcagctagacac-gactcccgatctcgaagcaaaagtaacagacccaccgaaaaccagc 144  Q
    |||||||||||||||| |  ||||| || ||||||| ||||||| |||| | | |||||||||||||||||| |||  ||| | |||||||||||||||     
T  4305702 cggtacaccagagaaaaacgaaatccagtcaaacaaagattgcaactagcccccgactcccgatctcgaagccaaatgaaccggcccaccgaaaaccagt 4305603  T
Q  145 acgcaaaaagtaagacaaatgacat 169  Q
    || ||| | |||||||||| |||||    
T  4305602 acacaatatgtaagacaaaagacat 4305578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 73 - 160
Target Start/End: Original strand, 21988049 - 21988137
Alignment:
Q  73 agccaaacaagattgcagctagacacga-ctcccgatctcgaagcaaaagtaacagacccaccgaaaaccagcacgcaaaaagtaagac 160  Q
    |||||||||||| ||||||||||||| | |||| ||||||||| |||||||||| | ||||||  ||  |||||| |||||||||||||    
T  21988049 agccaaacaagaatgcagctagacaccaactcctgatctcgaaacaaaagtaaccggcccaccagaattcagcacacaaaaagtaagac 21988137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 21 - 124
Target Start/End: Original strand, 46698863 - 46698967
Alignment:
Q  21 caaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagacacga-ctcccgatctcgaagcaaa 119  Q
    ||||||||||||||||||| ||| |||||| ||||| ||||||     | |   |||||||||| ||||||||||||| | |||||||||||||||||||    
T  46698863 caaatcagaagggcaccccacaccctcggtccaccaaagaaactctgtagcttaccaaacaagactgcagctagacaccaactcccgatctcgaagcaaa 46698962  T
Q  120 agtaa 124  Q
    |||||    
T  46698963 agtaa 46698967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 2061801 - 2061858
Alignment:
Q  6 accagactttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaac 63  Q
    ||||||||||| ||||||||||  ||||||||||||||  ||| ||||||||||||||    
T  2061801 accagactttaggatcaaatcaagagggcacccctcaccttcgatacaccagagaaac 2061858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 104 - 159
Target Start/End: Complemental strand, 38929753 - 38929698
Alignment:
Q  104 ccgatctcgaagcaaaagtaacagacccaccgaaaaccagcacgcaaaaagtaaga 159  Q
    |||||||||||||||||||||| | ||||||  || ||||||| ||||||||||||    
T  38929753 ccgatctcgaagcaaaagtaaccggcccaccagaatccagcacacaaaaagtaaga 38929698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 6600076 - 6600129
Alignment:
Q  73 agccaaacaagattgcagctagaca-cgactcccgatctcgaagcaaaagtaac 125  Q
    ||||||||||||||||| ||||||| | |||||||||||| |||||||| ||||    
T  6600076 agccaaacaagattgcaactagacaccaactcccgatctcaaagcaaaattaac 6600129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 161
Target Start/End: Complemental strand, 12296126 - 12296037
Alignment:
Q  73 agccaaacaagattgcagctagacacga-ctcccgatctcgaagcaaaagtaacagacccaccgaaaaccagcacgcaaaaagtaagaca 161  Q
    ||||||| |||| ||||||||||| | | ||||||||||||||||||||||||  | ||||||  || ||||||| ||| | ||||||||    
T  12296126 agccaaataagaatgcagctagacgccaactcccgatctcgaagcaaaagtaatcggcccaccagaatccagcacacaatatgtaagaca 12296037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 163
Target Start/End: Original strand, 38639525 - 38639630
Alignment:
Q  60 aaacatcaaatcaagccaaacaagattgcagctagacac-gactcccgatctcgaagcaaaagtaacagacccacc-gaaaaccagcacgcaaaaagtaa 157  Q
    ||||| |||||||  |||||||| |||| |||||| ||| | |||||||||||||||||||| |||| | |||||| ||  |||||||| ||| |||||     
T  38639525 aaacaccaaatcacaccaaacaatattgtagctaggcaccggctcccgatctcgaagcaaaactaaccggcccaccggagtaccagcacacaataagtat 38639624  T
Q  158 gacaaa 163  Q
    ||||||    
T  38639625 gacaaa 38639630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 32864619 - 32864814
Alignment:
Q  1 ggccaaccagactttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagcc-aaacaagattgcagctagaca-c 98  Q
    |||| ||||| ||||| || |||||| |||||||||||||||| ||| ||| | |||| ||||| ||||| ||||| ||||||||||| ||||||||| |    
T  32864619 ggcccaccagcctttaggaccaaatcggaagggcacccctcaccctcagtagatcagataaacaccaaataaagccaaaacaagattgtagctagacacc 32864718  T
Q  99 gactcccgatctcgaagcaaaagtaacagacccacc-gaaaaccagcacgcaaaaagtaagacaaatgacataataagtagaagtgcaaacaacaa 193  Q
    |||||| ||| |||||||||||||||| | |||||| |||||| ||||| ||||| ||| |||||| ||||| ||||| ||| |||||||||||||    
T  32864719 gactcctgatttcgaagcaaaagtaaccggcccaccggaaaactagcacacaaaacgtatgacaaaagacatgataagcagaggtgcaaacaacaa 32864814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 9313355 - 9313470
Alignment:
Q  9 agactttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagaca-cgactcccga 107  Q
    |||||||| || ||||||||||||||||||||||| | || ||||| ||||||||| ||||||| | ||||||| |||||||||||||| | ||||||||    
T  9313355 agactttaggaccaaatcagaagggcacccctcacgcccgatacacgagagaaacaccaaatcacggcaaacaaaattgcagctagacaccaactcccga 9313454  T
Q  108 tctcgaagcaaaagta 123  Q
    ||||||||||||||||    
T  9313455 tctcgaagcaaaagta 9313470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 194
Target Start/End: Complemental strand, 16147558 - 16147384
Alignment:
Q  21 caaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagaca-cgactcccgatctcgaagcaaa 119  Q
    |||| |||||||| ||| ||||| | |||||| | ||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||  |||    
T  16147558 caaaacagaagggaacctctcacccccggtacgctagagaaacaccaaatcaagccaaacaagattgcagctagacagtgactcccgatctcgaactaaa 16147459  T
Q  120 agtaacagacccaccgaaaaccagcacgcaaaaagtaagacaaatgacataataagtagaagtgcaaacaacaaa 194  Q
    |||||  | ||||||| || | | ||| ||| |||||||||||||||||| ||| |  |  ||||||||||||||    
T  16147458 agtaatcggcccaccggaacctaacacacaataagtaagacaaatgacatgatatgcggtggtgcaaacaacaaa 16147384  T

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Target: chr1; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 6 - 125
Target Start/End: Complemental strand, 34774889 - 34774770
Alignment:
Q  6 accagactttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagaca-cgactcc 104  Q
    ||||||| ||| || ||||||||||||||||| ||||| | || || || |||||||||||||||||||||||||||||||| || |||||| |||||||    
T  34774889 accagacgttaggaccaaatcagaagggcaccactcacccccg-tatactagagaaacatcaaatcaagccaaacaagattgtagttagacaccgactcc 34774791  T
Q  105 cgatctcgaagcaaaagtaac 125  Q
    || ||||||||||||||||||    
T  34774790 cgttctcgaagcaaaagtaac 34774770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 31 - 159
Target Start/End: Original strand, 5389509 - 5389639
Alignment:
Q  31 gggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaac-aagattgcagctagacac-gactcccgatctcgaagcaaaagtaacaga 128  Q
    ||||||||||| | | |||||||||||||||| ||||||||||| ||||| |||||||||||||||| | |||||||||||||||||| |||  ||| |     
T  5389509 gggcacccctcgcccccggtacaccagagaaaaatcaaatcaagtcaaacaaagattgcagctagacccggactcccgatctcgaagccaaatgaaccgg 5389608  T
Q  129 cccaccgaaaaccagcacgcaaaaagtaaga 159  Q
    ||||| |||||||||||| ||| | ||||||    
T  5389609 cccactgaaaaccagcacacaatatgtaaga 5389639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 46692877 - 46693047
Alignment:
Q  1 ggccaaccagactttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaac-aagattgcagctaga-cac 98  Q
    |||| |||||||| ||| | ||||| || |||||||| ||| | | |||||||||||||||| ||||||||||| ||||| ||||||||| ||||| | |    
T  46692877 ggcccaccagactatatcaccaaattagcagggcacctctcgcccccggtacaccagagaaaaatcaaatcaagtcaaacaaagattgcaactagacctc 46692976  T
Q  99 gactcccgatctcgaagcaaaagtaacagacccaccgaaaaccagcacgcaaaaagtaagacaaatgacat 169  Q
    |||||||||||||||||| |||  ||  | |||||||||||| ||||| ||| | |||||||||| |||||    
T  46692977 gactcccgatctcgaagccaaatgaatcggcccaccgaaaactagcacacaatatgtaagacaaaagacat 46693047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 85 - 259
Target Start/End: Original strand, 6583333 - 6583507
Alignment:
Q  85 ttgcagctagacac-gactcccgatctcgaagcaaaagtaacagacccaccgaaaaccagcacgcaaaaagtaagacaaatgacataataagtagaagtg 183  Q
    |||||||||||||| ||||||||||||||||||||||||||| | |||||||| ||||| ||| ||||||||| ||| || ||| | ||| |  |  |||    
T  6583333 ttgcagctagacaccgactcccgatctcgaagcaaaagtaaccggcccaccgacaaccaacacacaaaaagtatgac-aacgacgtgatatgcggtggtg 6583431  T
Q  184 caaacaacaaaccgatcaaaagaaaaaggcatagctcaaacaggcccactccctccaaacaccctaaactccttaa 259  Q
    |||||||||||| ||||||||||||||  |  | | |||  || |||||| ||| |||||||||||||| ||||||    
T  6583432 caaacaacaaactgatcaaaagaaaaaaactcaacacaacgagacccacttccttcaaacaccctaaacaccttaa 6583507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 213
Target Start/End: Original strand, 30685982 - 30686175
Alignment:
Q  21 caaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaa-gattgcagctaga-cacgactcccgatctcgaagcaa 118  Q
    ||||| || |||||||||||| | |  ||||||||||||||| | ||||||||| ||||||| |||||||| |||| | ||||||||||||||||||| |    
T  30685982 caaattagcagggcacccctcgccccaggtacaccagagaaaaaccaaatcaagtcaaacaaggattgcagttagacctcgactcccgatctcgaagcca 30686081  T
Q  119 aagtaacagacccaccgaaaaccagcacgcaaaaagtaagacaaatgacataataagtagaagtgcaaacaacaaaccgatcaaaagaaaaaggc 213  Q
    ||  ||| | |||||||||||||| ||| ||| | ||||||| || ||||   ||||  |||||  ||||||||||| ||||||||| |||||||    
T  30686082 aatgaaccggcccaccgaaaaccaacacacaatatgtaagacgaaagacaaggtaag-cgaagtttaaacaacaaacagatcaaaaggaaaaggc 30686175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 145
Target Start/End: Original strand, 31585838 - 31585964
Alignment:
Q  21 caaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaac-aagattgcagctaga-cacgactcccgatctcgaagcaa 118  Q
    ||||| || |||||||||||||| ||| |||||||||||||| | ||||||||| ||||| ||||||||||||||| | ||||||||||||||||||| |    
T  31585838 caaattagcagggcacccctcaccctcagtacaccagagaaaaaccaaatcaagtcaaacaaagattgcagctagaccccgactcccgatctcgaagcca 31585937  T
Q  119 aagtaacagacccaccgaaaaccagca 145  Q
    ||  ||| | |||||| |||| |||||    
T  31585938 aatgaaccggcccaccaaaaatcagca 31585964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 38544796 - 38544964
Alignment:
Q  1 ggccaaccagactttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaa-tcaagccaaacaagattgcagctagaca-c 98  Q
    |||| ||||||||| |||| ||||||||||||| |||||||| || | || ||||||||||||| |||| |||| | ||||||||||||||||||||| |    
T  38544796 ggcccaccagacttcatgaccaaatcagaaggg-acccctcattcccagtccaccagagaaacaccaaaatcaatc-aaacaagattgcagctagacacc 38544893  T
Q  99 gactcccgatctcgaagcaaaagtaacagacccaccgaaaaccagcacgcaaaaagtaagacaaatgacat 169  Q
     |||||| ||||||||||||||||||  | |||||   || ||||||| ||| | |||||||||| |||||    
T  38544894 aactcccaatctcgaagcaaaagtaatcggcccactagaatccagcacacaatatgtaagacaaacgacat 38544964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 24658952 - 24658793
Alignment:
Q  1 ggccaaccagactttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagacacga 100  Q
    |||| |||||||||||  | |||||||| |||||||||||  | | || |||||||||||| || || |||||| |||||| |||||||||||||||| |    
T  24658952 ggcccaccagactttagaaccaaatcagcagggcaccccttgcccccgatacaccagagaa-caccatatcaagtcaaacatgattgcagctagacacca 24658854  T
Q  101 -ctcccgatctcgaagcaaaagtaacagacccaccgaaaaccagcacgcaaaaagtaagac 160  Q
     |||||||||| ||||||||| |||| | ||||||| |  ||||||| ||||| |||||||    
T  24658853 actcccgatcttgaagcaaaaataaccggcccaccggactccagcacacaaaatgtaagac 24658793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 24684536 - 24684704
Alignment:
Q  1 ggccaaccagactttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaac-aagattgcagctaga-cac 98  Q
    |||| |||||||||||  ||||||| || |||||||||||| | | |||||||||||||||| | ||||||||| ||||| |||||| |||||||| | |    
T  24684536 ggcccaccagactttagaatcaaattagtagggcacccctcgcccccggtacaccagagaaa-accaaatcaagtcaaacaaagattacagctagacccc 24684634  T
Q  99 gactcccgatctcgaagcaaaagtaacagacccaccgaaaaccagcacgcaaaaagtaagacaaatgacat 169  Q
    |||||||||||||||||| |||  ||  |  ||||||||||||||||| ||| | ||||||| || |||||    
T  24684635 gactcccgatctcgaagccaaatgaattg-gccaccgaaaaccagcacacaatatgtaagacgaaagacat 24684704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 21 - 98
Target Start/End: Complemental strand, 27102194 - 27102116
Alignment:
Q  21 caaatcagaagggcacccc-tcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagacac 98  Q
    |||| |||||||||||||| |||| |||||||||||||||||||| ||||||| |||||| ||||||||||| ||||||    
T  27102194 caaaacagaagggcaccccctcaccctcggtacaccagagaaacaccaaatcacgccaaataagattgcagccagacac 27102116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 49 - 169
Target Start/End: Complemental strand, 41920428 - 41920306
Alignment:
Q  49 gtacaccagagaaacatcaaatcaagccaaacaa-gattgcagctagacac-gactcccgatctcgaagcaaaagtaacagacccaccgaaaaccagcac 146  Q
    |||||||||||||| | ||||||||| ||||||| |||||||||||||| | |||||||||||||||||| |||  ||| | |||||||||||| |||||    
T  41920428 gtacaccagagaaaaaccaaatcaagtcaaacaaagattgcagctagaccccgactcccgatctcgaagccaaatgaaccggcccaccgaaaactagcac 41920329  T
Q  147 gcaaaaagtaagacaaatgacat 169  Q
     ||| | ||||||| || |||||    
T  41920328 acaatatgtaagacgaaagacat 41920306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 42374171 - 42374061
Alignment:
Q  16 atgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagacac-gactcccgatctcgaa 114  Q
    |||| |||||||||||||||||||  || |||||||||||| ||||||||       ||||||||||||||||| |||||||| ||||||||||||||||    
T  42374171 atgaccaaatcagaagggcaccccaaaccctcggtacaccaaagaaacattgtcgtcagccaaacaagattgcaactagacactgactcccgatctcgaa 42374072  T
Q  115 gcaaaagtaac 125  Q
     ||||||||||    
T  42374071 tcaaaagtaac 42374061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 7857676 - 7857517
Alignment:
Q  1 ggccaaccagactttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagacacga 100  Q
    |||| |||||||||||  | |||||||| |||||||||||| | | | ||||||||||||| || || |||||| ||||||  |||||| |||||||| |    
T  7857676 ggcccaccagactttagaaccaaatcagcagggcacccctcgcccccagtacaccagagaa-caacatatcaagtcaaacataattgcaactagacacca 7857578  T
Q  101 -ctcccgatctcgaagcaaaagtaacagacccaccgaaaaccagcacgcaaaaagtaagac 160  Q
     |||||||||||||||||||| |||  | ||||| | |||||||||| ||| | |||||||    
T  7857577 actcccgatctcgaagcaaaaataatcggcccactggaaaccagcacacaatatgtaagac 7857517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 271
Target Start/End: Original strand, 10785489 - 10785656
Alignment:
Q  99 gactcccgatctcgaagcaaaagtaacagacccaccgaaaaccagcacgcaaaaagtaagacaaatgacataataagtagaagtgcaaacaacaaaccga 198  Q
    |||||||||||||||||||||| |||| | ||||||| |||||||||| |||| |||||||||||  |||  ||| |  |  ||||||||||     |||    
T  10785489 gactcccgatctcgaagcaaaattaaccggcccaccggaaaccagcacacaaacagtaagacaaaccacaagataggcgggggtgcaaacaa-----cga 10785583  T
Q  199 tcaaaagaaaaaggcatagctcaaacaggcccactccctccaaacaccctaaactccttaaaaactccaaaaa 271  Q
    ||||||| |||||||  |||||||   | ||  ||||||||||||||||||||| |||||| ||| |||||||    
T  10785584 tcaaaaggaaaaggctcagctcaatgggacctgctccctccaaacaccctaaacaccttaacaaccccaaaaa 10785656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 17033609 - 17033441
Alignment:
Q  1 ggccaaccagactttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagacacga 100  Q
    |||| |||||||| || || |||||||||||||||||||  ||||||||| ||||| |||| || |  |   ||||||||||||||||| |||||| | |    
T  17033609 ggcccaccagactataggaccaaatcagaagggcaccccctactctcggttcaccatagaatcaccgtagtcagccaaacaagattgcaactagacgcca 17033510  T
Q  101 ctcc-cgatctcgaagcaaaagtaacagacccaccgaaaaccagcacgcaaaaagtaagacaaatgaca 168  Q
     | | |||||||||| |||||||||| | ||||||  || ||||||| ||| |||||||||||| ||||    
T  17033509 attctcgatctcgaaacaaaagtaaccggcccaccagaatccagcacacaataagtaagacaaacgaca 17033441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 116
Target Start/End: Original strand, 24450017 - 24450105
Alignment:
Q  30 agggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaac-aagattgcagctaga-cacgactcccgatctcgaagc 116  Q
    |||||||||||| | | |||||||||||||||| | |||| |||| ||||| ||||||||||||||| | |||||||||||||||||||    
T  24450017 agggcacccctcgcccccggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagctagaccccgactcccgatctcgaagc 24450105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 46814525 - 46814649
Alignment:
Q  1 ggccaaccagactttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagaca-cg 99  Q
    |||| |||||||||||  | |||||||| |||||||||||  | | ||||||||||||| |||| || |||||| |||||| ||||||| ||||||| |     
T  46814525 ggcccaccagactttagaaccaaatcagcagggcaccccttgcccccggtacaccagag-aacaccatatcaagtcaaacaggattgcaactagacacca 46814623  T
Q  100 actcccgatctcgaagcaaaagtaac 125  Q
    |||| |||||||||| ||||| ||||    
T  46814624 actctcgatctcgaatcaaaaataac 46814649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 230 - 313
Target Start/End: Complemental strand, 7857444 - 7857360
Alignment:
Q  230 cactccctccaaacaccctaaactccttaaaaactccaaaaaa-caaacaagaactagtaacgacgaacaaagacccgagtaaca 313  Q
    ||||||||||||||||||||||| |||| | ||| ||||| |  ||||||||| ||||| ||||||||||  |||||||||||||    
T  7857444 cactccctccaaacaccctaaacaccttgacaaccccaaagacgcaaacaagagctagtgacgacgaacatggacccgagtaaca 7857360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 204
Target Start/End: Complemental strand, 52278436 - 52278317
Alignment:
Q  86 tgcagctagacac-gactcccgatctcgaagcaaaagtaacagacccaccgaaaaccagcacgcaaaaagtaagacaaatgacataataagtagaagtgc 184  Q
    ||||||||||||| | |||| | |||||||||||||||||  |  ||||||||||||| ||||||| ||| |||||||| ||||| |||||  |  |||     
T  52278436 tgcagctagacaccggctcctggtctcgaagcaaaagtaatcggtccaccgaaaaccaacacgcaataagcaagacaaacgacatgataagcggtggtga 52278337  T
Q  185 aaacaacaaaccgatcaaaa 204  Q
    |||||||||||  |||||||    
T  52278336 aaacaacaaacaaatcaaaa 52278317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 159
Target Start/End: Original strand, 20113599 - 20113739
Alignment:
Q  21 caaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatca-agccaaacaagattgcagctaga-cacgactcccgatctcgaagcaa 118  Q
    ||||| || |||||||||||| | | ||||||||| |||||| | |||| || | | ||  ||||||||||||||| | ||||||||||||||||||| |    
T  20113599 caaattagcagggcacccctcgcccccggtacacccgagaaaaaccaaaccatatctaacaaagattgcagctagaccccgactcccgatctcgaagcca 20113698  T
Q  119 aagtaacagacccaccgaaaaccagcacgcaaaaagtaaga 159  Q
    ||  ||| | |||||||||||| ||||| ||| | ||||||    
T  20113699 aatgaaccggcccaccgaaaactagcacacaatatgtaaga 20113739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 58150 - 58025
Alignment:
Q  1 ggccaaccagactttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagac-acg 99  Q
    |||| |||| |||||| || |||||| ||||||||||   ||| || ||||||||||||||||| ||||||| ||||||||||||||||||||||| |||    
T  58150 ggcccaccaaactttaggaccaaatctgaagggcaccatacaccctaggtacaccagagaaacaccaaatcacgccaaacaagattgcagctagacaacg 58051  T
Q  100 actcccgatctcgaagcaaaagtaac 125  Q
    ||||||||||||||||||||||||||    
T  58050 actcccgatctcgaagcaaaagtaac 58025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 1075 - 1243
Alignment:
Q  1 ggccaaccagactttatgatcaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaa-tcaagccaaacaagattgcagctagaca-c 98  Q
    |||| ||||||||| |||| ||||||||||||| |||||||| || | || ||||||||||||| |||| |||| | ||||||||||||||||||||| |    
T  1075 ggcccaccagacttcatgaccaaatcagaaggg-acccctcattcccagtccaccagagaaacaccaaaatcaatc-aaacaagattgcagctagacacc 1172  T
Q  99 gactcccgatctcgaagcaaaagtaacagacccaccgaaaaccagcacgcaaaaagtaagacaaatgacat 169  Q
     |||||| ||||||||||||||||||  | |||||   || ||||||| ||| | |||||||||| |||||    
T  1173 aactcccaatctcgaagcaaaagtaatcggcccactagaatccagcacacaatatgtaagacaaacgacat 1243  T

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Target: scaffold0062 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 23 - 124
Target Start/End: Complemental strand, 59620 - 59518
Alignment:
Q  23 aatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgcagctagacacga-ctcccgatctcgaagcaaaag 121  Q
    |||||||||||||||||||||   |||| |||||||||||||  | |   ||||||||||||||||| ||| |||| | ||||||||||| |||||||||    
T  59620 aatcagaagggcacccctcacctccggttcaccagagaaacactatagtcagccaaacaagattgcaactaaacaccaactcccgatctcaaagcaaaag 59521  T
Q  122 taa 124  Q
    |||    
T  59520 taa 59518  T

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Target: scaffold0062; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 47094 - 47028
Alignment:
Q  23 aatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaacaagattgca 89  Q
    ||||||||||||||||||||| | |||| |||||||||||||  | |   |||||||||||||||||    
T  47094 aatcagaagggcacccctcacccccggttcaccagagaaacactatagtcagccaaacaagattgca 47028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 32 - 169
Target Start/End: Original strand, 35860 - 36000
Alignment:
Q  32 ggcacccctcactctcggtacaccagagaaacatcaaa-tcaagccaaacaa-gattgcagctagaca-cgactcccgatctcgaagcaaaagtaacaga 128  Q
    |||||||||| | | |||||||||||||||| | |||| | ||| ||||||| ||||||| ||||||  ||||||||||||||||||| |||  ||| |     
T  35860 ggcacccctcgcccccggtacaccagagaaaaaccaaaattaagtcaaacaaagattgcaactagacctcgactcccgatctcgaagccaaatgaaccgg 35959  T
Q  129 cccaccgaaaaccagcacgcaaaaagtaagacaaatgacat 169  Q
    |||||||||| ||||||| ||| | ||||||| || |||||    
T  35960 cccaccgaaagccagcacacaatatgtaagacgaaagacat 36000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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