View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18030_low_1 (Length: 625)
Name: NF18030_low_1
Description: NF18030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18030_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 481; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 19 - 531
Target Start/End: Complemental strand, 29611123 - 29610611
Alignment:
| Q |
19 |
atgtctcgcgcaagcaatagctttgttcctgaagtactaattagatatatgaaagtgattttgataaagatgactatggatactaattttctataaattg |
118 |
Q |
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| T |
29611123 |
atgtctcgcgcaagcaatagctttgttcctgaagtactaattagatatatgaaagtgattttgataacgatgactatggatactaattttctataaattg |
29611024 |
T |
|
| Q |
119 |
ttgttaaaatatttaatttcataaccaatggcatctgcctacttacctcccagccaaaaatgggtagccctttggatgatgttctggaggttggccttgc |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
29611023 |
ttgttaaaatatttaatttcataaccaatggcatctgcctacttacctcccagccaaaaatgggtagccctttcgataatgttctggaggttggccttgc |
29610924 |
T |
|
| Q |
219 |
aatcctgaaacataagaagtcatatttcggacaatttcggtgtcttcgctgtaactctcatagcatctaccccatctaggatctttgcagacctattcat |
318 |
Q |
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| T |
29610923 |
aatcctgaaacataagaagtcatattttggacaatttcggtgtcttcgctgtaactctcatagcatctaccccatctaggatctttgcagacctattcat |
29610824 |
T |
|
| Q |
319 |
tcacatatacaagtgagttttacatctggaagttcatctattttctatagaaagaaatttaaagtatagcgagttcaataacaaattcaaaagttgcctt |
418 |
Q |
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| T |
29610823 |
tcacatatgcaagtgagttttacatctggaagttcatctattttttatagaaataaatttaaagtatagcgagttcaataacaaattcaaaagttgcctt |
29610724 |
T |
|
| Q |
419 |
acagatacactaggagctaaagtatagtgagttccacttgctctaagttcaagtgacgttgcagctgcaattttttgaactaaatctgcatctctacaag |
518 |
Q |
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| T |
29610723 |
acagatacactaggggctaaagtatagtgagttccacttgctctaagttcaagtgacgttgcagctgcaattttttgaactaaatctgcatctctacaag |
29610624 |
T |
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| Q |
519 |
catacacaccaca |
531 |
Q |
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| T |
29610623 |
catacacaccaca |
29610611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 162 - 326
Target Start/End: Original strand, 29583221 - 29583385
Alignment:
| Q |
162 |
tacctcccagccaaaaatgggtagccctttggatgatgttctggaggttggccttgcaatcctgaaacataagaagtcatatttcggacaatttcggtgt |
261 |
Q |
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| T |
29583221 |
tacctcccagccacaaatgggtaaccccttggatgtctttctggaggttggccttgcaaacctgaaacataagaagtcatatttcggacaatttcagtgt |
29583320 |
T |
|
| Q |
262 |
cttcgctgtaactctcatagcatctaccccatctaggatctttgcagacctattcattcacatat |
326 |
Q |
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| T |
29583321 |
cttcgctgtaactctcatagcatcttccccatctgggatctttgcagacctgtccattcacatat |
29583385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 413 - 516
Target Start/End: Original strand, 29583966 - 29584069
Alignment:
| Q |
413 |
tgccttacagatacactaggagctaaagtatagtgagttccacttgctctaagttcaagtgacgttgcagctgcaattttttgaactaaatctgcatctc |
512 |
Q |
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| T |
29583966 |
tgccttacagccacacaaggagcacaagtatagtgagttctacttgctctaagttcaagtgatattgcagctccaattctttgaactaaatctgcatctc |
29584065 |
T |
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| Q |
513 |
taca |
516 |
Q |
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|||| |
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| T |
29584066 |
taca |
29584069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 566 - 607
Target Start/End: Complemental strand, 29610615 - 29610574
Alignment:
| Q |
566 |
ccacaagagatatgtagtagataagttcaaataagccaatac |
607 |
Q |
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| T |
29610615 |
ccacaagagatatgtagtagataagttcaaataagccaatac |
29610574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 234 - 312
Target Start/End: Original strand, 25128579 - 25128657
Alignment:
| Q |
234 |
gaagtcatatttcggacaatttcggtgtcttcgctgtaactctcatagcatctaccccatctaggatctttgcagacct |
312 |
Q |
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|||||||| |||||||| ||||| |||||||| || |||| |||||||||||| ||||| |||||||||||||| |||| |
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| T |
25128579 |
gaagtcatctttcggactatttcagtgtcttcactataacactcatagcatcttccccacctaggatctttgcatacct |
25128657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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