View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18030_low_11 (Length: 333)
Name: NF18030_low_11
Description: NF18030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18030_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 12 - 314
Target Start/End: Original strand, 39172552 - 39172853
Alignment:
| Q |
12 |
cgaagaatatgaaaatgaggtggagtggattgacccgagaggttacgtttatttattctgtcttaacaatcaaatatggtatggtcatggactcatggga |
111 |
Q |
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| T |
39172552 |
cgaagaaaatgaaaatgaggtggagtggattgacccgagaggttacgtttatttattctgtcttaacaatcaaatatggtatggtcatggactcatgggc |
39172651 |
T |
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| Q |
112 |
agtcataggcagtcgtgggccgattccatattaaaatcgatttaattggaaaaatcgatttccatattcgtttttgaatttgtagctgggtttatgtaaa |
211 |
Q |
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| T |
39172652 |
tgtcataggcagtcgtgggccgattccatattaaaatcgatttaattggaaaaatcgatttccatattcgtttttgaatttgtagctgggtttttgtaaa |
39172751 |
T |
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| Q |
212 |
ttgtagttaatgcttttaaaggtgggagagttatatttgataatgtactatttcaaatatgcaattgtccaatagcttaattctgttcttggtataccaa |
311 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39172752 |
ttgtagttaatgctttt-aaggtgggagagttatatttgataatgtactatttcaaatatgcagttgtccaatagcttaattctgttcttggtataccaa |
39172850 |
T |
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| Q |
312 |
aac |
314 |
Q |
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||| |
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| T |
39172851 |
aac |
39172853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 12 - 310
Target Start/End: Original strand, 39176437 - 39176726
Alignment:
| Q |
12 |
cgaagaatatgaaaatgaggtggagtggattgacccgagaggttacgtttatttattctgtcttaacaatcaaatatggtatggtcatggactcatggga |
111 |
Q |
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||||||| |||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39176437 |
cgaagaaaatgaaaatgaggtggagtggatcgacccgagaggttatgtatatttattctgtcttaacaatcaaatatggtatggtcatggactcatgggc |
39176536 |
T |
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| Q |
112 |
agtcataggcagtcgtgggccgattccatattaaaatcgatttaattggaaaaatcgatttccatattcgtttttgaatttgtagctgggtttatgtaaa |
211 |
Q |
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| T |
39176537 |
cgtcataggctg----------attccatattaaaatcgatttaattggaaaaatcgatttccatattcgtttttgaatttgtagctgggtttttgtaaa |
39176626 |
T |
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| Q |
212 |
ttgtagttaatgcttttaaaggtgggagagttatatttgataatgtactatttcaaatatgcaattgtcc-aatagcttaattctgttcttggtatacca |
310 |
Q |
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||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||| |
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| T |
39176627 |
ttgtagttaatgcttttaaaggtggtagagttatatttgacaatgtactatttcaaatatggaattgtccaaatagcataattctgttcttggtatacca |
39176726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 47 - 110
Target Start/End: Complemental strand, 39174368 - 39174305
Alignment:
| Q |
47 |
cgagaggttacgtttatttattctgtcttaacaatcaaatatggtatggtcatggactcatggg |
110 |
Q |
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||||||||||| ||| |||||| ||| ||||||| |||||| ||||||| ||||||||||||| |
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| T |
39174368 |
cgagaggttacatttgtttattttgttttaacaaacaaatacagtatggtgatggactcatggg |
39174305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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