View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18030_low_12 (Length: 310)
Name: NF18030_low_12
Description: NF18030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18030_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 5e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 15 - 294
Target Start/End: Complemental strand, 24727084 - 24726825
Alignment:
| Q |
15 |
agaagaatatatgtatatataagaagtagaaaacaaagcatgcatgttggaatacagtgaattagatgaagctaataaagcattatctcattaatggaaa |
114 |
Q |
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| T |
24727084 |
agaagaatatatgtatatataagaagtagaaaacaaagcatgcatgttggaatacagtgaa---gatgaagctaataaagcattatctcattaatggaaa |
24726988 |
T |
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| Q |
115 |
caagataaagattattgtgta-ggggagaaataagaagatatagacaatgactcagtgttaattaaggttagttcannnnnnnatctctgagtaaaatta |
213 |
Q |
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| T |
24726987 |
caagataaagattattgtgtagggggagaaataagaagatatagacaatgactcagtgttaattaaggttagtt-----------------gtaaaatta |
24726905 |
T |
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| Q |
214 |
aggttaatacatgaagatacggaaaggaatgattgtgaaataggtcaaaaaacgttggccccaccacgtgtgggttgtttc |
294 |
Q |
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| T |
24726904 |
aggttaatacatgaagatacggtaaggaatgattgtgaaatagg-gaaaaaacgttggtcccaccacgtgtgggttgtttc |
24726825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 24718689 - 24718648
Alignment:
| Q |
23 |
atatgtatatataagaagtagaaaacaaagcatgcatgttgg |
64 |
Q |
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| T |
24718689 |
atatttatatataggtagtagaaaacaaagcatgcatgttgg |
24718648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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