View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18030_low_13 (Length: 302)

Name: NF18030_low_13
Description: NF18030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18030_low_13
NF18030_low_13
[»] chr4 (14 HSPs)
chr4 (1-302)||(26832308-26832611)
chr4 (1-78)||(26435603-26435680)
chr4 (1-69)||(26433832-26433900)
chr4 (1-54)||(24307046-24307099)
chr4 (1-65)||(23408942-23409006)
chr4 (1-54)||(23868555-23868608)
chr4 (1-54)||(23453774-23453827)
chr4 (1-53)||(23401898-23401950)
chr4 (1-53)||(23885651-23885703)
chr4 (172-233)||(23401713-23401774)
chr4 (1-53)||(23416108-23416160)
chr4 (13-72)||(34662440-34662499)
chr4 (147-211)||(23409089-23409153)
chr4 (172-216)||(23868373-23868417)
[»] chr2 (1 HSPs)
chr2 (1-50)||(14715342-14715391)


Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 26832611 - 26832308
Alignment:
Q  1 tcctctgcgggtttcttctctgctggcttcttctctccttttggcgccattgaaaggattgagaatttggaacctcgaaaaaagttagggtttcgatttg 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  26832611 tcctctgctggtttcttctctgctggcttcttctctccttttggcgccattcaaaggattgagaacttggaacctcgaaaaaagttagggtttcgatttg 26832512  T
Q  101 ggggaattggaaatgtagaatgtgtgtgt--aaatcctgaatgttgcggtggtttaaatataagaaggctcttgtgtttctattggctagtgaggtttcc 198  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  26832511 ggggaattggaaatgtagaatgtgtgtgtgtaaatcctgaatgttgcggtggtttaaatataagaaggctcttgtgtttctattggctattgaggtttcc 26832412  T
Q  199 cacggatcgatgacgtggagtactttcatccgttatattcattcccaacaaaaacattacaatggacgatcaagatcgtgttttgaactcaataatgatg 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||    
T  26832411 cacggatcgatgacgtggagtactttcatccgttatattcattcccaacaacaacattaaaatggacggtcaagatcgtgttttgaactcaataatgatg 26832312  T
Q  299 cgga 302  Q
    ||||    
T  26832311 cgga 26832308  T

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Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 26435680 - 26435603
Alignment:
Q  1 tcctctgcgggtttcttctctgctggcttcttctctccttttggcgccattgaaaggattgagaatttggaacctcga 78  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  26435680 tcctctgctggtttcttctctgctggcttcttctctccttttggcgccattcaaaggattgagaacttggaacctcga 26435603  T

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Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 26433900 - 26433832
Alignment:
Q  1 tcctctgcgggtttcttctctgctggcttcttctctccttttggcgccattgaaaggattgagaatttg 69  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||    
T  26433900 tcctctgctggtttcttctctgctggcttcttctctccttttggcgccattgaaggaattgaaaatttg 26433832  T

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Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 24307099 - 24307046
Alignment:
Q  1 tcctctgcgggtttcttctctgctggcttcttctctccttttggcgccattgaa 54  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  24307099 tcctctgcgggtttcttctctgctggcttcttctctccctttggcgccattgaa 24307046  T

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Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 23408942 - 23409006
Alignment:
Q  1 tcctctgcgggtttcttctctgctggcttcttctctccttttggcgccattgaaaggattgagaa 65  Q
    ||||| |||||||||||||| ||||||||||||||||| ||||| ||||||||||||||| ||||    
T  23408942 tcctcagcgggtttcttctccgctggcttcttctctccctttggtgccattgaaaggattaagaa 23409006  T

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Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 23868608 - 23868555
Alignment:
Q  1 tcctctgcgggtttcttctctgctggcttcttctctccttttggcgccattgaa 54  Q
    |||||||||||||||||||| ||||||||||||||||| ||||| |||||||||    
T  23868608 tcctctgcgggtttcttctccgctggcttcttctctccctttggtgccattgaa 23868555  T

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Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 23453774 - 23453827
Alignment:
Q  1 tcctctgcgggtttcttctctgctggcttcttctctccttttggcgccattgaa 54  Q
    ||||| || ||||||||||| ||||||||||||||||| |||||||||||||||    
T  23453774 tcctcagcaggtttcttctccgctggcttcttctctccctttggcgccattgaa 23453827  T

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Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 23401950 - 23401898
Alignment:
Q  1 tcctctgcgggtttcttctctgctggcttcttctctccttttggcgccattga 53  Q
    ||||| |||||||||||||| ||||||||||||||||| ||||| ||||||||    
T  23401950 tcctcagcgggtttcttctccgctggcttcttctctccctttggtgccattga 23401898  T

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Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 23885703 - 23885651
Alignment:
Q  1 tcctctgcgggtttcttctctgctggcttcttctctccttttggcgccattga 53  Q
    ||||| || ||||||||||||||||||||||||||||| ||||| ||||||||    
T  23885703 tcctcagctggtttcttctctgctggcttcttctctccctttggtgccattga 23885651  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 233
Target Start/End: Complemental strand, 23401774 - 23401713
Alignment:
Q  172 gtgtttctattggctagtgaggtttcccacggatcgatgacgtggagtactttcatccgtta 233  Q
    ||||||||||||| |||||| |||| || ||||||||||||||||| |  ||||||||||||    
T  23401774 gtgtttctattgggtagtgaagtttgccccggatcgatgacgtggaattgtttcatccgtta 23401713  T

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Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 23416108 - 23416160
Alignment:
Q  1 tcctctgcgggtttcttctctgctggcttcttctctccttttggcgccattga 53  Q
    ||||| || ||||||||||| ||||||||||||||||| ||||| ||||||||    
T  23416108 tcctcagctggtttcttctccgctggcttcttctctccctttggtgccattga 23416160  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 34662440 - 34662499
Alignment:
Q  13 ttcttctctgctggcttcttctctccttttggcgccattgaaaggattgagaatttggaa 72  Q
    |||| |||||| || ||||||||||| ||||| ||||||||| |||||| ||||||||||    
T  34662440 ttctcctctgcaggtttcttctctccctttggtgccattgaatggattgggaatttggaa 34662499  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 211
Target Start/End: Original strand, 23409089 - 23409153
Alignment:
Q  147 gtggtttaaatataagaaggctcttgtgtttctattggctagtgaggtttcccacggatcgatga 211  Q
    |||||||| ||||||||||| ||| ||||||||||||| || ||  |||| || |||||||||||    
T  23409089 gtggtttatatataagaaggttctcgtgtttctattggttactgtagtttaccgcggatcgatga 23409153  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 216
Target Start/End: Complemental strand, 23868417 - 23868373
Alignment:
Q  172 gtgtttctattggctagtgaggtttcccacggatcgatgacgtgg 216  Q
    ||||||||||||||||||||||||  |  ||||||||||||||||    
T  23868417 gtgtttctattggctagtgaggttcgctgcggatcgatgacgtgg 23868373  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 14715391 - 14715342
Alignment:
Q  1 tcctctgcgggtttcttctctgctggcttcttctctccttttggcgccat 50  Q
    |||||||||||||||||||| ||||||||||||||||  ||||| |||||    
T  14715391 tcctctgcgggtttcttctcagctggcttcttctctcactttggtgccat 14715342  T

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