View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18030_low_16 (Length: 278)
Name: NF18030_low_16
Description: NF18030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18030_low_16 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 21465579 - 21465319
Alignment:
| Q |
1 |
agaagacttagtacatgaagtggttgtccaatattgttccaataattaataatgtcgaaattagacttattaatttgtatttggggaatcagagcaatca |
100 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21465579 |
agaagactaagtacatgaagtggtcgtccaatattgttccaataattaataatgtcgaaattagacttattaatttgtatttggggaatcagagcaatca |
21465480 |
T |
|
| Q |
101 |
tttaaaaaggatgagaatccataacctgaatatgaacccaacaaagtttttgtagtatcaacaaatatagccaatgattaatcagcttagggatgaacta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
21465479 |
tttaaaaaggatgagaatccataacctgaatatgaaccttacaaagtttttgtagtatcaacaaatatagccaatgattaatcagcttagagatgaacta |
21465380 |
T |
|
| Q |
201 |
atcaagtcatcggttgataattcttttttggtcaaaagagatgagatttcaataaaaggac |
261 |
Q |
| |
|
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
21465379 |
atcgagtcatcggttgataattcttttttgatcaaaagagatgagatttcaataaaaggac |
21465319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University