View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18030_low_17 (Length: 263)

Name: NF18030_low_17
Description: NF18030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18030_low_17
NF18030_low_17
[»] chr1 (18 HSPs)
chr1 (14-199)||(43045331-43045522)
chr1 (14-199)||(43045784-43045975)
chr1 (14-199)||(43066432-43066623)
chr1 (14-199)||(43084212-43084403)
chr1 (14-199)||(3301067-3301258)
chr1 (14-199)||(45983469-45983660)
chr1 (14-176)||(38137644-38137808)
chr1 (14-194)||(45993254-45993440)
chr1 (14-176)||(7888563-7888727)
chr1 (8-176)||(7890828-7890998)
chr1 (9-171)||(43076578-43076741)
chr1 (14-171)||(40034489-40034646)
chr1 (68-176)||(51292009-51292116)
chr1 (196-243)||(3301300-3301347)
chr1 (196-242)||(43046017-43046063)
chr1 (196-230)||(43084445-43084479)
chr1 (196-243)||(43066343-43066390)
chr1 (196-230)||(51292185-51292219)
[»] chr4 (2 HSPs)
chr4 (14-171)||(4231804-4231963)
chr4 (196-243)||(4232037-4232084)
[»] chr8 (4 HSPs)
chr8 (14-176)||(4620027-4620191)
chr8 (8-194)||(1846723-1846915)
chr8 (65-176)||(4787294-4787405)
chr8 (68-171)||(4297866-4297969)
[»] chr2 (3 HSPs)
chr2 (14-194)||(34691164-34691348)
chr2 (14-194)||(34713576-34713760)
chr2 (55-194)||(16232552-16232697)
[»] chr5 (1 HSPs)
chr5 (9-171)||(16349471-16349635)
[»] chr6 (4 HSPs)
chr6 (68-171)||(7519508-7519611)
chr6 (68-199)||(7528847-7528982)
chr6 (196-230)||(7519400-7519434)
chr6 (196-230)||(7528771-7528805)
[»] chr7 (1 HSPs)
chr7 (78-140)||(39242152-39242214)


Alignment Details
Target: chr1 (Bit Score: 116; Significance: 4e-59; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 14 - 199
Target Start/End: Original strand, 43045331 - 43045522
Alignment:
Q  14 gaacagcacaatcagcttgggatgtcacggtggtcatattcttaatgaaatc--tgtgtccgggggcatcaatgacagtgcagtagtacttggtcgtctc 111  Q
    |||| ||||||||||||||||||||  ||||| |||| ||||||||||||||  |||||||||||||||| ||||||||||||||||||||||| |||||    
T  43045331 gaacggcacaatcagcttgggatgttccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcgatgacagtgcagtagtacttggttgtctc 43045430  T
Q  112 aaacttccagagcgcaatgtcaattgtgatacctctttcacgttcagccttgagcttgtcgag----catgcatacttgaatgaacgtttgt 199  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||    || ||||||||||||||||| ||||    
T  43045431 aaacttccagagagcaatgtcaatggtgatacctctttcacgttcagccttgagcttgtcaaggacccaggcatacttgaatgaacgcttgt 43045522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 14 - 199
Target Start/End: Original strand, 43045784 - 43045975
Alignment:
Q  14 gaacagcacaatcagcttgggatgtcacggtggtcatattcttaatgaaatc--tgtgtccgggggcatcaatgacagtgcagtagtacttggtcgtctc 111  Q
    |||| ||||||||||||||||||||  ||||| |||| ||||||||||||||  |||||||||||||||| ||||||||||||||||||||||| |||||    
T  43045784 gaacggcacaatcagcttgggatgttccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcgatgacagtgcagtagtacttggttgtctc 43045883  T
Q  112 aaacttccagagcgcaatgtcaattgtgatacctctttcacgttcagccttgagcttgtcgag----catgcatacttgaatgaacgtttgt 199  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||    || ||||||||||||||||| ||||    
T  43045884 aaacttccagagagcaatgtcaatggtgatacctctttcacgttcagccttgagcttgtcaaggacccaggcatacttgaatgaacgcttgt 43045975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 14 - 199
Target Start/End: Complemental strand, 43066623 - 43066432
Alignment:
Q  14 gaacagcacaatcagcttgggatgtcacggtggtcatattcttaatgaaatc--tgtgtccgggggcatcaatgacagtgcagtagtacttggtcgtctc 111  Q
    |||| ||||||||||||||||||||  ||||| |||| ||||||||||||||  |||||||||||||||| ||||||||||||||||||||||| |||||    
T  43066623 gaacggcacaatcagcttgggatgttccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcgatgacagtgcagtagtacttggttgtctc 43066524  T
Q  112 aaacttccagagcgcaatgtcaattgtgatacctctttcacgttcagccttgagcttgtcgag----catgcatacttgaatgaacgtttgt 199  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||    || ||||||||||||||||| ||||    
T  43066523 aaacttccagagagcaatgtcaatggtgatacctctttcacgttcagccttgagcttgtcaagaacccaggcatacttgaatgaacgcttgt 43066432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 14 - 199
Target Start/End: Original strand, 43084212 - 43084403
Alignment:
Q  14 gaacagcacaatcagcttgggatgtcacggtggtcatattcttaatgaaatc--tgtgtccgggggcatcaatgacagtgcagtagtacttggtcgtctc 111  Q
    |||| ||||||||||||||||||||  ||||| |||| ||||||||||||||  |||||||||||||||| ||||||||||||||||||||||| |||||    
T  43084212 gaacggcacaatcagcttgggatgttccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcgatgacagtgcagtagtacttggttgtctc 43084311  T
Q  112 aaacttccagagcgcaatgtcaattgtgatacctctttcacgttcagccttgagcttgtcgag----catgcatacttgaatgaacgtttgt 199  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||    || ||||||||||||||||| ||||    
T  43084312 aaacttccagagagcaatgtcaatggtgatacctctttcacgttcagccttgagcttgtcaaggacccaggcatacttgaatgaacgcttgt 43084403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 14 - 199
Target Start/End: Original strand, 3301067 - 3301258
Alignment:
Q  14 gaacagcacaatcagcttgggatgtcacggtggtcatattcttaatgaaatc--tgtgtccgggggcatcaatgacagtgcagtagtacttggtcgtctc 111  Q
    |||||||||||||||||||||||||  | ||  |||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||| || |||||    
T  3301067 gaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccgggggcatcaatgacagtgcagtagtacttagtagtctc 3301166  T
Q  112 aaacttccagagcgcaatgtcaattgtgatacctctttcacgttcagccttgagcttgtcgagcat----gcatacttgaatgaacgtttgt 199  Q
    ||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||     ||||||||||||||||| ||||    
T  3301167 aaacttccacagagcaatgtcaattgtgatacctctttcacattcagccttgagcttgtcgagcacccaagcatacttgaatgaacgcttgt 3301258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 14 - 199
Target Start/End: Complemental strand, 45983660 - 45983469
Alignment:
Q  14 gaacagcacaatcagcttgggatgtcacggtggtcatattcttaatgaaatc--tgtgtccgggggcatcaatgacagtgcagtagtacttggtcgtctc 111  Q
    |||||||||| ||||||||||| ||  ||||| |||| ||||||||||||||  |||||||||||||||||||||||||||||| ||||||| | |||||    
T  45983660 gaacagcacagtcagcttgggacgttccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcaatgacagtgcagttgtacttgtttgtctc 45983561  T
Q  112 aaacttccagagcgcaatgtcaattgtgatacctctttcacgttcagccttgagcttgtcgagcat----gcatacttgaatgaacgtttgt 199  Q
    ||||||| | || | |||||||||||| | |||||||||||||||||||||||||||||| ||||     ||||||||||||||||| ||||    
T  45983560 aaacttcgacagggtaatgtcaattgtaacacctctttcacgttcagccttgagcttgtcaagcacccaagcatacttgaatgaacgcttgt 45983469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 14 - 176
Target Start/End: Complemental strand, 38137808 - 38137644
Alignment:
Q  14 gaacagcacaatcagcttgggatgtcacggtggtcatattcttaatgaaatc--tgtgtccgggggcatcaatgacagtgcagtagtacttggtcgtctc 111  Q
    |||||||||| ||||||||||| ||| ||||  |||| ||||||||||||||  ||||||||||||||||||||| |||||||||||||||||| |||||    
T  38137808 gaacagcacagtcagcttgggacgtcccggtaatcatgttcttaatgaaatccctgtgtccgggggcatcaatgagagtgcagtagtacttggtagtctc 38137709  T
Q  112 aaacttccagagcgcaatgtcaattgtgatacctctttcacgttcagccttgagcttgtcgagca 176  Q
    ||||||  | || | ||||||||| ||||||||||||||||| || |||||||||||||||||||    
T  38137708 aaactttgacagagaaatgtcaatagtgatacctctttcacgctcggccttgagcttgtcgagca 38137644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 14 - 194
Target Start/End: Complemental strand, 45993440 - 45993254
Alignment:
Q  14 gaacagcacaatcagcttgggatgtcacggtggtcatattcttaatgaaatc--tgtgtccgggggcatcaatgacagtgcagtagtacttggtcgtctc 111  Q
    |||||||||||||||||||||| ||| ||||| |||| ||||||||||||||  ||||||||| |||||||||||||||||||  ||||||| | |||||    
T  45993440 gaacagcacaatcagcttgggacgtcccggtgatcatgttcttaatgaaatccctgtgtccggaggcatcaatgacagtgcagctgtacttgtttgtctc 45993341  T
Q  112 aaacttccagagcgcaatgtcaattgtgatacctctttcacgttcagccttgagcttgtcgagcat----gcatacttgaatgaacg 194  Q
    ||||||| | |  | | ||||||||||||||||||||||||| |||| |||||||||||| ||||     |||||||||||||||||    
T  45993340 aaacttcgacaaagaactgtcaattgtgatacctctttcacgctcagtcttgagcttgtcaagcacccaagcatacttgaatgaacg 45993254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 14 - 176
Target Start/End: Complemental strand, 7888727 - 7888563
Alignment:
Q  14 gaacagcacaatcagcttgggatgtcacggtggtcatattcttaatgaaatc--tgtgtccgggggcatcaatgacagtgcagtagtacttggtcgtctc 111  Q
    ||||||||||||||||||  || | | ||||| |||| ||||| ||||||||  ||||||||||||||||||||| ||||||| ||||  |||| ||||     
T  7888727 gaacagcacaatcagcttcagacgccccggtgatcatgttcttgatgaaatccctgtgtccgggggcatcaatgagagtgcagcagtagctggttgtctg 7888628  T
Q  112 aaacttccagagcgcaatgtcaattgtgatacctctttcacgttcagccttgagcttgtcgagca 176  Q
    ||||||||| || | ||||||||||||||||||||||||||| ||||||||||| ||||| ||||    
T  7888627 aaacttccaaagagaaatgtcaattgtgatacctctttcacgctcagccttgagtttgtcaagca 7888563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 176
Target Start/End: Complemental strand, 7890998 - 7890828
Alignment:
Q  8 tgatatgaacagcacaatcagcttgggatgtcacggtggtcatattcttaatgaaatc--tgtgtccgggggcatcaatgacagtgcagtagtacttggt 105  Q
    ||||| |||||||||| ||||||| ||| |   | ||| |||| ||||||||||||||  ||||||| ||||||||||||| |||||||  | | |||||    
T  7890998 tgataagaacagcacagtcagcttcggacgctccagtgatcatgttcttaatgaaatccctgtgtccaggggcatcaatgagagtgcagcggaagttggt 7890899  T
Q  106 cgtctcaaacttccagagcgcaatgtcaattgtgatacctctttcacgttcagccttgagcttgtcgagca 176  Q
     |||||||||||||| || | ||||||||||||||||||||||||||| || |||||||||||||| ||||    
T  7890898 tgtctcaaacttccacagagaaatgtcaattgtgatacctctttcacgctcggccttgagcttgtcaagca 7890828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 9 - 171
Target Start/End: Complemental strand, 43076741 - 43076578
Alignment:
Q  9 gatatgaacagcacaatcagcttgggatgtcacggtggtcatattcttaatgaaatc--tgtgtccgggggcatcaatgacagtgcagtagtacttggtc 106  Q
    |||| ||| |||||||||||||||||| ||| | ||| |||| |||||||||||||   ||||||| ||| |||||||||||  |||| ||| ||| ||     
T  43076741 gataagaagagcacaatcagcttgggacgtcccagtgatcatgttcttaatgaaattcttgtgtcccgggacatcaatgacaacgcagcagttctttgtt 43076642  T
Q  107 gtctcaaacttccagagcgcaatgtcaattgtgatacctctttcacgttcagccttgagcttgtc 171  Q
    ||||||||||||||||| | ||| ||||| || ||||||||||||||||||||| ||||||||||    
T  43076641 gtctcaaacttccagagagaaatctcaatggt-atacctctttcacgttcagccctgagcttgtc 43076578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 171
Target Start/End: Complemental strand, 40034646 - 40034489
Alignment:
Q  14 gaacagcacaatcagcttgggatgtcacggtggtcatattcttaatgaaatctgtgtccgggggcatcaatgacagtgcagtagtacttggtcgtctcaa 113  Q
    |||||||||| |||||| |||| ||  ||||   ||| ||||| ||||||||||||||||||||| ||||||| |||||||| ||| ||||| |||||||    
T  40034646 gaacagcacagtcagctagggacgtgccggttaacatgttcttgatgaaatctgtgtccgggggcgtcaatgagagtgcagtggtatttggttgtctcaa 40034547  T
Q  114 acttccagagcgcaatgtcaattgtgatacctctttcacgttcagccttgagcttgtc 171  Q
    ||||  | |  | ||| |||||||| | |||||||||||| |||||||||||||||||    
T  40034546 acttggacatggaaatatcaattgtaacacctctttcacgctcagccttgagcttgtc 40034489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 68 - 176
Target Start/End: Original strand, 51292009 - 51292116
Alignment:
Q  68 tgtccgggggcatcaatgacagtgcagtagtacttggtcgtctcaaacttccagagcgcaatgtcaattgtgatacctctttcacgttcagccttgagct 167  Q
    ||||||||||||||||||| |||||| ||||||||| | || ||||||||  | || | ||||||||||||||||||||||||||| |||||||||| ||    
T  51292009 tgtccgggggcatcaatgagagtgcaatagtacttgattgt-tcaaacttggatagagaaatgtcaattgtgatacctctttcacgctcagccttgaact 51292107  T
Q  168 tgtcgagca 176  Q
    |||| ||||    
T  51292108 tgtcaagca 51292116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 196 - 243
Target Start/End: Original strand, 3301300 - 3301347
Alignment:
Q  196 ttgtcaatacctccaagcttgtagatcaagtgaccggtggtagttgac 243  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3301300 ttgtcaatacctccaagcttgtagatcaagtgaccggtggtggttgac 3301347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 43046017 - 43046063
Alignment:
Q  196 ttgtcaatacctccaagcttgtagatcaagtgaccggtggtagttga 242  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||    
T  43046017 ttgtcaatacctccaagcttgtagatcaagtgaccagtggtggttga 43046063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 230
Target Start/End: Original strand, 43084445 - 43084479
Alignment:
Q  196 ttgtcaatacctccaagcttgtagatcaagtgacc 230  Q
    |||||||||||||||||||||||||||||||||||    
T  43084445 ttgtcaatacctccaagcttgtagatcaagtgacc 43084479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 243
Target Start/End: Complemental strand, 43066390 - 43066343
Alignment:
Q  196 ttgtcaatacctccaagcttgtagatcaagtgaccggtggtagttgac 243  Q
    ||||||||||||||||| |||||||| |||||||| ||||| ||||||    
T  43066390 ttgtcaatacctccaagtttgtagattaagtgaccagtggtggttgac 43066343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 230
Target Start/End: Original strand, 51292185 - 51292219
Alignment:
Q  196 ttgtcaatacctccaagcttgtagatcaagtgacc 230  Q
    ||||||||||||||||||||||||||||| |||||    
T  51292185 ttgtcaatacctccaagcttgtagatcaaatgacc 51292219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 14 - 171
Target Start/End: Original strand, 4231804 - 4231963
Alignment:
Q  14 gaacagcacaatcagcttgggatgtcacggtggtcatattcttaatgaaatc--tgtgtccgggggcatcaatgacagtgcagtagtacttggtcgtctc 111  Q
    |||||||||||||||||||||||||  | ||  |||| ||||||||||||||  ||||||| ||||||||||||||||||||||||||||| || |||||    
T  4231804 gaacagcacaatcagcttgggatgtaccagtaatcatgttcttaatgaaatccctgtgtccaggggcatcaatgacagtgcagtagtacttagtggtctc 4231903  T
Q  112 aaacttccagagcgcaatgtcaattgtgatacctctttcacgttcagccttgagcttgtc 171  Q
    ||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||    
T  4231904 aaacttccacagagcaatgtcaattgtgatacctctttcacgctcagccttgagcttgtc 4231963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 196 - 243
Target Start/End: Original strand, 4232037 - 4232084
Alignment:
Q  196 ttgtcaatacctccaagcttgtagatcaagtgaccggtggtagttgac 243  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  4232037 ttgtcaatacctccaagcttgtagatcaagtgaccagtggtagttgac 4232084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 6e-46; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 14 - 176
Target Start/End: Original strand, 4620027 - 4620191
Alignment:
Q  14 gaacagcacaatcagcttgggatgtcacggtggtcatattcttaatgaaatct--gtgtccgggggcatcaatgacagtgcagtagtacttggtcgtctc 111  Q
    |||||||||| ||||||||||||||  ||||| |||| |||||||||||||||  |||||||||||||||||||| |||||||||||||||||| |||||    
T  4620027 gaacagcacagtcagcttgggatgttccggtgatcatgttcttaatgaaatctctgtgtccgggggcatcaatgagagtgcagtagtacttggttgtctc 4620126  T
Q  112 aaacttccagagcgcaatgtcaattgtgatacctctttcacgttcagccttgagcttgtcgagca 176  Q
    ||||||  | || | |||||| |||||||||||||||||||| ||||||||||||||||| ||||    
T  4620127 aaacttggacagagaaatgtcgattgtgatacctctttcacgctcagccttgagcttgtcaagca 4620191  T

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Target: chr8; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 8 - 194
Target Start/End: Original strand, 1846723 - 1846915
Alignment:
Q  8 tgatatgaacagcacaatcagcttgggatgtcacggtggtcatattcttaatgaaatc--tgtgtccgggggcatcaatgacagtgcagtagtacttggt 105  Q
    ||||| |||| ||||| ||||||| |||||   ||||| |||| ||||||||||||||  ||||||||||||||||||||| |||||||  | | |||||    
T  1846723 tgataagaacggcacagtcagcttcggatgctccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcaatgagagtgcagaggaagttggt 1846822  T
Q  106 cgtctcaaacttccagagcgcaatgtcaattgtgatacctctttcacgttcagccttgagcttgtcgagcat----gcatacttgaatgaacg 194  Q
     |||||||||||||| || | ||||||||||||||||||||||||||| || |||||||||||||| ||||     |||||||||||||||||    
T  1846823 tgtctcaaacttccatagagaaatgtcaattgtgatacctctttcacgctcggccttgagcttgtcaagcacccaagcatacttgaatgaacg 1846915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 65 - 176
Target Start/End: Complemental strand, 4787405 - 4787294
Alignment:
Q  65 ctgtgtccgggggcatcaatgacagtgcagtagtacttggtcgtctcaaacttccagagcgcaatgtcaattgtgatacctctttcacgttcagccttga 164  Q
    ||||||||||| ||||||||||||||||||| ||||||| | |||||||||||  | |  | |||||||||||||  |||||||||||| ||| ||||||    
T  4787405 ctgtgtccgggagcatcaatgacagtgcagttgtacttgtttgtctcaaacttggacatagaaatgtcaattgtggcacctctttcacgctcacccttga 4787306  T
Q  165 gcttgtcgagca 176  Q
    | ||||| ||||    
T  4787305 gtttgtcaagca 4787294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 68 - 171
Target Start/End: Original strand, 4297866 - 4297969
Alignment:
Q  68 tgtccgggggcatcaatgacagtgcagtagtacttggtcgtctcaaacttccagagcgcaatgtcaattgtgatacctctttcacgttcagccttgagct 167  Q
    ||||||||||||||||||||| |||||| ||||||| | |||||||||||  | || | |||||||||||||  |||||||||| | ||||| ||||| |    
T  4297866 tgtccgggggcatcaatgacaatgcagttgtacttgtttgtctcaaacttggacagagaaatgtcaattgtggcacctctttcatggtcagctttgagtt 4297965  T
Q  168 tgtc 171  Q
    ||||    
T  4297966 tgtc 4297969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 14 - 194
Target Start/End: Original strand, 34691164 - 34691348
Alignment:
Q  14 gaacagcacaatcagcttgggatgtcacggtggtcatattcttaatgaaatc--tgtgtccgggggcatcaatgacagtgcagtagtacttggtcgtctc 111  Q
    |||||||||| ||||||||||| ||| ||||| |||| ||||||||||||||  |||||||||| |||||||||| |||| || |||||||||| |||||    
T  34691164 gaacagcacagtcagcttgggaggtcccggtgatcatgttcttaatgaaatccctgtgtccgggagcatcaatgagagtgaagcagtacttggttgtctc 34691263  T
Q  112 aaacttccagagcgcaatgtcaattgtgatacctctttcacgttcagccttgagcttgtcgagcat----gcatacttgaatgaacg 194  Q
    |||||| || ||   ||||||||||||||||||||||||||| ||||| ||||||||||| ||||     |||||||||||||||||    
T  34691264 aaacttgcataga--aatgtcaattgtgatacctctttcacgctcagcgttgagcttgtcaagcacccaagcatacttgaatgaacg 34691348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 14 - 194
Target Start/End: Original strand, 34713576 - 34713760
Alignment:
Q  14 gaacagcacaatcagcttgggatgtcacggtggtcatattcttaatgaaatc--tgtgtccgggggcatcaatgacagtgcagtagtacttggtcgtctc 111  Q
    |||||||||| ||||||||||| ||| ||||| |||| ||||||||||||||  |||||||||| |||||||||| |||| || |||||||||| |||||    
T  34713576 gaacagcacagtcagcttgggaggtcccggtgatcatgttcttaatgaaatccctgtgtccgggagcatcaatgagagtgaagcagtacttggttgtctc 34713675  T
Q  112 aaacttccagagcgcaatgtcaattgtgatacctctttcacgttcagccttgagcttgtcgagcat----gcatacttgaatgaacg 194  Q
    |||||| || ||   ||||||||||||||||||||||||||| ||||| ||||||||||| ||||     |||||||||||||||||    
T  34713676 aaacttgcataga--aatgtcaattgtgatacctctttcacgctcagcgttgagcttgtcaagcacccaagcatacttgaatgaacg 34713760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 55 - 194
Target Start/End: Original strand, 16232552 - 16232697
Alignment:
Q  55 ttaatgaaatc--tgtgtccgggggcatcaatgacagtgcagtagtacttggtcgtctcaaacttccagagcgcaatgtcaattgtgatacctctttcac 152  Q
    |||||||||||  |||||||||||||||||||||  |||||  |||||||||| ||||||||||| || |  | ||||||||||||||||||||||||||    
T  16232552 ttaatgaaatccctgtgtccgggggcatcaatgagggtgcaacagtacttggttgtctcaaacttgcacatggaaatgtcaattgtgatacctctttcac 16232651  T
Q  153 gttcagccttgagcttgtcgagcat----gcatacttgaatgaacg 194  Q
    | ||||||||||||||||| ||||     |||||||||||||||||    
T  16232652 gctcagccttgagcttgtcaagcacccaagcatacttgaatgaacg 16232697  T

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Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 171
Target Start/End: Original strand, 16349471 - 16349635
Alignment:
Q  9 gatatgaacagcacaatcagcttgggatgtcacggtggtcatattcttaatgaaatc--tgtgtccgggggcatcaatgacagtgcagtagtacttggtc 106  Q
    |||| ||| |||||||||||||||||||||| | ||  |||| ||||||||||||||  ||||||||||||||||||||| |||||||  |||||||||     
T  16349471 gataagaagagcacaatcagcttgggatgtcccagtaatcatgttcttaatgaaatccctgtgtccgggggcatcaatgatagtgcagcggtacttggtt 16349570  T
Q  107 gtctcaaacttccagagcgcaatgtcaattgtgatacctctttcacgttcagccttgagcttgtc 171  Q
    |||||||| ||| | |  | | |||||||||||||||||||||| || ||||||||||| |||||    
T  16349571 gtctcaaaattcaacatagaattgtcaattgtgatacctctttcgcgctcagccttgagtttgtc 16349635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 7e-21; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 68 - 171
Target Start/End: Complemental strand, 7519611 - 7519508
Alignment:
Q  68 tgtccgggggcatcaatgacagtgcagtagtacttggtcgtctcaaacttccagagcgcaatgtcaattgtgatacctctttcacgttcagccttgagct 167  Q
    |||||||| ||||||||||| ||||||||||||||||| |||||||| ||||| |  ||||| ||||| || || ||||||||||| |||||||| ||||    
T  7519611 tgtccgggagcatcaatgactgtgcagtagtacttggtggtctcaaatttccacaaagcaatatcaatggtaattcctctttcacgctcagccttaagct 7519512  T
Q  168 tgtc 171  Q
    ||||    
T  7519511 tgtc 7519508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 68 - 199
Target Start/End: Complemental strand, 7528982 - 7528847
Alignment:
Q  68 tgtccgggggcatcaatgacagtgcagtagtacttggtcgtctcaaacttccagagcgcaatgtcaattgtgatacctctttcacgttcagccttgagct 167  Q
    |||||||| ||||||||||| ||||||||||||||||| |||||||| ||||| |  ||||| || || || || ||||||||||| |||||||| || |    
T  7528982 tgtccgggagcatcaatgactgtgcagtagtacttggtggtctcaaatttccacaaggcaatatcgatggtaattcctctttcacgctcagccttaagtt 7528883  T
Q  168 tgtcgag----catgcatacttgaatgaacgtttgt 199  Q
    |||| ||    |||||||||||||||||||| ||||    
T  7528882 tgtcaagaacccatgcatacttgaatgaacgcttgt 7528847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 230
Target Start/End: Complemental strand, 7519434 - 7519400
Alignment:
Q  196 ttgtcaatacctccaagcttgtagatcaagtgacc 230  Q
    |||||||||||||| ||||||||||||||||||||    
T  7519434 ttgtcaatacctcctagcttgtagatcaagtgacc 7519400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 230
Target Start/End: Complemental strand, 7528805 - 7528771
Alignment:
Q  196 ttgtcaatacctccaagcttgtagatcaagtgacc 230  Q
    |||||||||||||| ||||||||||||||||||||    
T  7528805 ttgtcaatacctcctagcttgtagatcaagtgacc 7528771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 78 - 140
Target Start/End: Complemental strand, 39242214 - 39242152
Alignment:
Q  78 catcaatgacagtgcagtagtacttggtcgtctcaaacttccagagcgcaatgtcaattgtga 140  Q
    ||||||||||||||||||||||||| || |||||||||||  | || ||||||||||||||||    
T  39242214 catcaatgacagtgcagtagtactttgttgtctcaaacttggacagagcaatgtcaattgtga 39242152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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