View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18030_low_2 (Length: 590)
Name: NF18030_low_2
Description: NF18030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18030_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 1 - 572
Target Start/End: Original strand, 31869652 - 31870219
Alignment:
| Q |
1 |
gatatttgagtgttaataattctcaaccacaaacatcgacttcaaaaaataannnnnnncgatgttttaaatggcagtgtaaaggttacactacatttgc |
100 |
Q |
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| T |
31869652 |
gatatttgagtgttaataattctcaaccacaaacatcgacttcaaaaaataatttttttcgatgttttaaatggcagtgtaaaggttacactacatttgc |
31869751 |
T |
|
| Q |
101 |
cagcagacctttagattgcatcatgtaatgcagctgcaaaggttttaaacagaagtctgtgactgagatctgggcagcaacatcagggtttttgttgtta |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31869752 |
cagcagacttttagattgcatcatgtaatgcagctgcaaaggttttaaacagaagtttgtgactgagatctgggcagcaacatcagggtttttgttgtta |
31869851 |
T |
|
| Q |
201 |
ctgtgactataattgagatagcatcggtcacatttgagtgcaattctctgttatatcaaggaccatggcgcgaccacaatttaaaacgttacactacatt |
300 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31869852 |
ctgtgactataattgagatagcatcggtcgcatttgagtgcaattctctgttatatcaaggaccatggcgcgaccacaatttaaaacgttacactacatt |
31869951 |
T |
|
| Q |
301 |
accccgatgcatgtttaaagtttcaacatcaagc-aaactatacaaagccaatataaactaaaccgtgcacaattttgttttgttgttaagttacttttc |
399 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
31869952 |
accccgatgcatgtttaaagtttcaacatcaagcaaaactatacaaagccaatataaactaaaccgtgcacaa-----ttttgttgttaagttacttttc |
31870046 |
T |
|
| Q |
400 |
agcacaaatcaatttacttcaaactccttttaactaaaatcaaaattaactaaaacaaaaaccaagattaagcagggtcacctttgaatcctctttaagg |
499 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31870047 |
aacacaaatcaatttacttcaaactccttttaactaaaatcaaaattaactaaaacaaaaaccaagattaagcagggtcacctttgaatcctctttaagg |
31870146 |
T |
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| Q |
500 |
tttgtggattaatctcagcctgtgtaggaggacccatcctcttcttcataatctcattaccccatttcaacct |
572 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
31870147 |
tttgtggattaatctcagcctgtgtaggaggacccatcttcttcttcataatctcattaccccatttcaacct |
31870219 |
T |
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