View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18030_low_20 (Length: 227)
Name: NF18030_low_20
Description: NF18030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18030_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 46366566 - 46366774
Alignment:
| Q |
1 |
acaaaagaacccaacatcctcgaagtgggggtgtggtatagggtgcaatgtagtagtacaaaatgtgcgatatattgggatgtgtttgtcactttgttgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
46366566 |
acaaaagaacccaacatcctcgaagtgggggtgtggtatagggtgcaatgtagtagtacaaaatgtgcgatatattgggatgtgtttgtcaccttgttgt |
46366665 |
T |
|
| Q |
101 |
gttttgtggaagagaaggtcccaccacacgcacttgctctttctttggttgcttgggaagactcaccccaccactaccaagcatcatcaatctcaaacat |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46366666 |
gttttgtggaagagaaggtcccaccacacgcacttgctctttctttggttgcttgggaagactcaccccaccactaccaagcatcatcaatctcaaacat |
46366765 |
T |
|
| Q |
201 |
gccctttct |
209 |
Q |
| |
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||||||||| |
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| T |
46366766 |
gccctttct |
46366774 |
T |
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