View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18030_low_4 (Length: 504)
Name: NF18030_low_4
Description: NF18030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18030_low_4 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 16 - 504
Target Start/End: Complemental strand, 1154184 - 1153696
Alignment:
| Q |
16 |
caaaggctaaggttcttcttcttacattttcctgatttctggattatcacttaattgtgttcaatttgctagtaacaagtaattaattatttggtactgt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1154184 |
caaaggctaaggttcttcttcttacattttcctgatttctggattatcacttaattgtgttcaatttgctagtaacaagtaattaattatctggtactgt |
1154085 |
T |
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| Q |
116 |
tttgtgcagcttggtattgtgctgggaaaggctaagagtggtgaccagagtaccgatgcttcctcagagtagtggaactgacaggagatgatgaaactct |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1154084 |
tttgtgcagcttggtattgtgctgggaaaggctaagagtggtgaccagagtactgatgcttcctcagagtagtggaactgacaggagatgatgaaactct |
1153985 |
T |
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| Q |
216 |
actgcttgtagagtactgtgtgtaataaactgaatttgtggtgtagaatgtagatagatatatgttggcgttctttcattccttagtttgttttctcttt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
1153984 |
actgcttgtagagtactgtgtgtaataaactgaatttgtggtgtagaatgtagatagatatatgttggtgttctttcattccttagtttgttttctcttt |
1153885 |
T |
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| Q |
316 |
tgtctcgggggccaataaactgtgctgatgatagcccttctgaaagtagatttttgtgcaaagctattgcaattttagtcatgtaataaacaaagtattc |
415 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1153884 |
tgtctcgggggccaataaaccgtgctgatgatagcccttctgaaagtagatttttgtgcaaagctattgcaattttagtcatgtaataaacaaagtattc |
1153785 |
T |
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| Q |
416 |
ctgtatggatgtacattctcatgagtcataatagtgtaaaaagattctggagttaataaatgttttgcaatttggttactttgagtgcc |
504 |
Q |
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| T |
1153784 |
ctgtatggatgtacattctcatgagtcataatagtgtaaaaagattctggagttaataaatgttttgcaatttggttactttgagtgcc |
1153696 |
T |
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