View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18030_low_6 (Length: 387)
Name: NF18030_low_6
Description: NF18030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18030_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 11 - 249
Target Start/End: Original strand, 53174843 - 53175081
Alignment:
| Q |
11 |
cagaacctgtggtggatagttcaaaaacaaagtaaagtccattgtcaatacaacatcctagaagagataaaacattggaatgacgaacatgaccaattgt |
110 |
Q |
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| T |
53174843 |
cagaaccagtggtggatagttcaaaaacaaagtaaagtccattgtcaatacaacatcctagaagagataaaacattggaatgacgaacatgaccaattgt |
53174942 |
T |
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| Q |
111 |
tccaatctctgtcaaaaactctttctcttttctttcatcctttgaagctcttgttaatctcttcacagcaatttcttcaccatttttcaatgttcccttg |
210 |
Q |
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| T |
53174943 |
tccaatctctgtcaaaaactctttctcttttctttcatcctttgaagctcttgttaatctcttcacagcaatttcttcaccatttttcaatgttcccttg |
53175042 |
T |
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| Q |
211 |
taaacctcagcataaccaccttttccaaccatattttct |
249 |
Q |
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| T |
53175043 |
taaacctcagcataaccaccttttccaaccatattttct |
53175081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 328 - 366
Target Start/End: Original strand, 53175165 - 53175203
Alignment:
| Q |
328 |
caaacaagtcttaatcacctgagttgaagccattggtag |
366 |
Q |
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| T |
53175165 |
caaacaagtcttaatcacctgagttgaagccattggtag |
53175203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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