View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18030_low_8 (Length: 371)
Name: NF18030_low_8
Description: NF18030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18030_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 17 - 359
Target Start/End: Complemental strand, 10117344 - 10117004
Alignment:
| Q |
17 |
aacaacaaagatggaaactcttaacgtttatacaaattaacattcaggtaatagaaaactgcatgttgctatatataccatatatgtaatcaaagaatac |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10117344 |
aacaacaaagatggaaactcttaacgtttatacaaattaacattcaggtaatagaaaactgcatgttgctatatataccatatatgtaatcaaagaatac |
10117245 |
T |
|
| Q |
117 |
aagtgatcatgtatagtattcaatctatatgccaatcatgtaaatcttttttattcaacaattcagtcctatcacacttatgaagtaccgacatagatac |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10117244 |
aagtgatcatgtatagtattcaatctatatgccaatcatgtaaatcttttttattcaacaattcagtcctatcacacttatgaagtaccgacatagatac |
10117145 |
T |
|
| Q |
217 |
atacaccagacatgacgctacacgatgctgacatcaacaagtaaacatgtaaaaagttnnnnnnnnntaattgaagtgattgaatctaactacatgtgtc |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
10117144 |
atacaccagacatgacgctacacgatgctgacatcaacaagtaaacatgtaaaaagttaaaaaaaa--aattgaagtgattgaatctaactacatgtgtc |
10117047 |
T |
|
| Q |
317 |
gatgttaacgcaccattagtccaaaccatcattgctacatatt |
359 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
10117046 |
gatgttaacacaccattagtccaaaccatcattgctacatatt |
10117004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University