View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18031_high_1 (Length: 620)
Name: NF18031_high_1
Description: NF18031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18031_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-101; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 121 - 329
Target Start/End: Original strand, 40887296 - 40887508
Alignment:
| Q |
121 |
tttaaatagtctagaatttgacacgttttttgaaaaagaaggttaaaaatagtgatgacgtaagtggtgatggagttactcggtgtgaaatacag----a |
216 |
Q |
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| T |
40887296 |
tttaaatagtctagaatttgacacgttttttcaaaaagaaggttaaaaatagtgatgacgtaagtggtgatggagttactcggtgtgaaatacagacaga |
40887395 |
T |
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| Q |
217 |
tcggcacttggacacgagaagaagcatcgacgcgtaatcttcgttattctgttcacactcacaattgtcggtggctctcagaacaaaggtatatactttg |
316 |
Q |
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| T |
40887396 |
tcggcacttggacacgagaagaagcatccacgcgtaatcttcgttattctgttcacactcacaattgtcggtggctctcagaacaaaggtatatactttg |
40887495 |
T |
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| Q |
317 |
tagcactttgtgt |
329 |
Q |
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| T |
40887496 |
tagcactttgtgt |
40887508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 380 - 470
Target Start/End: Complemental strand, 11161831 - 11161741
Alignment:
| Q |
380 |
gggtgacggctagggtttgagtataattttttgttttagataatgatattaatcatcaaaaacgtattaaatggttgactacttgtgtatt |
470 |
Q |
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| T |
11161831 |
gggtgacagcaagggtttgagtataattttttgttttaaataatgatattaatcatcgaatacgtattaaatggttgactacttgtgtatt |
11161741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 487 - 603
Target Start/End: Complemental strand, 11161079 - 11160960
Alignment:
| Q |
487 |
tacttgtgtattaataacatgtgtgaaattgttgattgcgatatatatatttataaatgcatggagtatataattattcttgatttttt-------cttt |
579 |
Q |
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| T |
11161079 |
tacttgtgtattaataacattagtgaaatagttgattgcgatatatat--ttataaatgcatggagtatataattat--ttgatttttttaagaaacttt |
11160984 |
T |
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| Q |
580 |
attcttgacttctcatatttgaaa |
603 |
Q |
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| T |
11160983 |
attcttgacttctcatatttgaaa |
11160960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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