View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18031_high_19 (Length: 218)
Name: NF18031_high_19
Description: NF18031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18031_high_19 |
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| [»] scaffold0517 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 123; Significance: 2e-63; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 23204007 - 23204218
Alignment:
| Q |
1 |
cagattctacattatagtgggctgaaaacgcttcagaagggtgttctttacggtaactcgcccagaattcaaaacactagtctcccaccattaatataaa |
100 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||| | ||||||||||| || || |
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| T |
23204007 |
cagattctacattatagtgggctgaaaacacttcagaagggtgttctttatggtaactcaaccagaattcaaaacacaggcctcccaccatt--gatgaa |
23204104 |
T |
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| Q |
101 |
gagaaacacatcccctttaagagacaaagaacccacccttatcatgagcttaaacata-cagttaatatgcagtagcagcgcgatcaatctcaacaaaat |
199 |
Q |
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| | ||||||||||||| |||||||||||||||||| || ||||||||||||||| || |||| |||||| |||||||||| |||||||||||||||||| |
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| T |
23204105 |
gggcaacacatccccttcaagagacaaagaacccactctaatcatgagcttaaacttagcagtaaatatgtagtagcagcgtgatcaatctcaacaaaat |
23204204 |
T |
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| Q |
200 |
gtatatagctgagg |
213 |
Q |
| |
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|||||||||||||| |
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| T |
23204205 |
gtatatagctgagg |
23204218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0517 (Bit Score: 102; Significance: 8e-51; HSPs: 1)
Name: scaffold0517
Description:
Target: scaffold0517; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 13 - 213
Target Start/End: Original strand, 5914 - 6115
Alignment:
| Q |
13 |
tatagtgggctgaaaacgcttcagaagggtgttctttacggtaactcgcccagaattcaaaacactagtctcccaccattaatataaagagaaacacatc |
112 |
Q |
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| T |
5914 |
tatagtgggttgaaaacgcttcagaatggtgttctttatagtaattcgatcatgatttaaaacactagtctcccaccattgatgtaaagggaaacacatt |
6013 |
T |
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| Q |
113 |
ccctttaagagacaaagaacccacccttatcatgagcttaaacata-cagttaatatgcagtagcagcgcgatcaatctcaacaaaatgtatatagctga |
211 |
Q |
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| T |
6014 |
cccttcaagagacaaataacccactcttatcatgagcttaaacttatccataaatatgcagcagcagcgtgatcaatctcaacaaaatgtatatagctga |
6113 |
T |
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| Q |
212 |
gg |
213 |
Q |
| |
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|| |
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| T |
6114 |
gg |
6115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 8e-51; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 13 - 213
Target Start/End: Complemental strand, 37402162 - 37401961
Alignment:
| Q |
13 |
tatagtgggctgaaaacgcttcagaagggtgttctttacggtaactcgcccagaattcaaaacactagtctcccaccattaatataaagagaaacacatc |
112 |
Q |
| |
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||||||||| |||||||||||||||| ||||||||||| |||| ||| || ||| |||||||||||||||||||||| || ||||| ||||||||| |
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| T |
37402162 |
tatagtgggttgaaaacgcttcagaatggtgttctttatagtaattcgatcatgatttaaaacactagtctcccaccattgatgtaaagggaaacacatt |
37402063 |
T |
|
| Q |
113 |
ccctttaagagacaaagaacccacccttatcatgagcttaaacata-cagttaatatgcagtagcagcgcgatcaatctcaacaaaatgtatatagctga |
211 |
Q |
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||||| |||||||||| ||||||| |||||||||||||||||| || | | ||||||||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
37402062 |
cccttcaagagacaaataacccactcttatcatgagcttaaacttatccataaatatgcagcagcagcgtgatcaatctcaacaaaatgtatatagctga |
37401963 |
T |
|
| Q |
212 |
gg |
213 |
Q |
| |
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|| |
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| T |
37401962 |
gg |
37401961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 13 - 213
Target Start/End: Original strand, 28252336 - 28252537
Alignment:
| Q |
13 |
tatagtgggctgaaaacgcttcagaagggtgttctttacggtaactcgcccagaattcaaaacactagtctcccaccattaatataaagagaaacacatc |
112 |
Q |
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||||||||| |||||||||||||||| ||||||||||| ||||| ||| || ||||||||||| |||||||||||||| || | ||| | ||||||| |
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| T |
28252336 |
tatagtgggttgaaaacgcttcagaatggtgttctttatggtaattcgatcatgattcaaaacacaagtctcccaccattgatgtgaagggcaacacatt |
28252435 |
T |
|
| Q |
113 |
ccctttaagagacaaagaacccacccttatcatgagcttaaacata-cagttaatatgcagtagcagcgcgatcaatctcaacaaaatgtatatagctga |
211 |
Q |
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||| |||||||||||| ||||||| |||||||||||||||||| || | | |||||||||||||| || |||||||||||||||||||||||||| ||| |
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| T |
28252436 |
cccattaagagacaaataacccactcttatcatgagcttaaacttatccataaatatgcagtagcaacgtgatcaatctcaacaaaatgtatatagttga |
28252535 |
T |
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| Q |
212 |
gg |
213 |
Q |
| |
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|| |
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|
| T |
28252536 |
gg |
28252537 |
T |
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