View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18031_high_2 (Length: 511)

Name: NF18031_high_2
Description: NF18031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18031_high_2
NF18031_high_2
[»] chr1 (11 HSPs)
chr1 (73-191)||(7550009-7550126)
chr1 (73-185)||(2098743-2098855)
chr1 (80-189)||(8757268-8757378)
chr1 (75-116)||(44729823-44729864)
chr1 (124-189)||(4482551-4482617)
chr1 (73-112)||(35996975-35997014)
chr1 (87-192)||(43363238-43363335)
chr1 (130-189)||(7166180-7166240)
chr1 (130-189)||(19011412-19011472)
chr1 (130-189)||(22563443-22563503)
chr1 (130-191)||(39346930-39346992)
[»] chr5 (7 HSPs)
chr5 (76-192)||(28580399-28580520)
chr5 (75-192)||(36730167-36730290)
chr5 (76-159)||(43406028-43406112)
chr5 (78-159)||(30327657-30327739)
chr5 (73-159)||(31478712-31478799)
chr5 (116-185)||(6526092-6526163)
chr5 (130-191)||(16280303-16280365)
[»] chr4 (15 HSPs)
chr4 (73-192)||(44294260-44294382)
chr4 (73-159)||(35130635-35130722)
chr4 (73-189)||(50263984-50264100)
chr4 (75-159)||(31351697-31351782)
chr4 (73-185)||(13538253-13538366)
chr4 (73-159)||(35010407-35010494)
chr4 (77-159)||(42657503-42657586)
chr4 (75-159)||(40981810-40981895)
chr4 (73-156)||(17882271-17882354)
chr4 (76-156)||(55967780-55967861)
chr4 (130-191)||(23069358-23069421)
chr4 (77-158)||(3746412-3746493)
chr4 (73-102)||(45872386-45872415)
chr4 (130-189)||(637156-637216)
chr4 (78-122)||(28091391-28091435)
[»] chr8 (8 HSPs)
chr8 (73-189)||(28300084-28300201)
chr8 (73-128)||(9209619-9209674)
chr8 (73-151)||(12959704-12959783)
chr8 (73-112)||(31441264-31441303)
chr8 (74-112)||(13147815-13147853)
chr8 (130-191)||(1337066-1337128)
chr8 (130-189)||(8265325-8265385)
chr8 (130-186)||(41616323-41616379)
[»] chr7 (13 HSPs)
chr7 (73-181)||(32958486-32958595)
chr7 (72-123)||(45664673-45664724)
chr7 (73-156)||(9667258-9667342)
chr7 (76-159)||(27744579-27744662)
chr7 (74-123)||(19554704-19554753)
chr7 (124-191)||(18223670-18223736)
chr7 (77-112)||(27227336-27227371)
chr7 (130-189)||(24781087-24781147)
chr7 (77-158)||(36876997-36877079)
chr7 (73-122)||(28696863-28696912)
chr7 (73-102)||(45967443-45967472)
chr7 (76-112)||(44165959-44165995)
chr7 (130-189)||(48119527-48119587)
[»] chr3 (16 HSPs)
chr3 (73-177)||(3313490-3313597)
chr3 (76-182)||(34875621-34875730)
chr3 (74-124)||(7950929-7950979)
chr3 (71-159)||(21177059-21177147)
chr3 (75-118)||(51816021-51816064)
chr3 (73-159)||(38745317-38745404)
chr3 (116-191)||(44764764-44764838)
chr3 (75-165)||(44856261-44856352)
chr3 (77-159)||(51829581-51829663)
chr3 (73-123)||(9737637-9737687)
chr3 (130-189)||(45701401-45701461)
chr3 (116-189)||(49443377-49443451)
chr3 (77-159)||(17002900-17002980)
chr3 (75-112)||(21892594-21892631)
chr3 (77-157)||(54240605-54240686)
chr3 (130-189)||(33606893-33606953)
[»] chr6 (3 HSPs)
chr6 (73-159)||(20599416-20599503)
chr6 (75-159)||(21023710-21023795)
chr6 (73-190)||(6922627-6922745)
[»] chr2 (7 HSPs)
chr2 (75-191)||(31068885-31069002)
chr2 (76-149)||(34028097-34028171)
chr2 (73-159)||(9198953-9199041)
chr2 (76-123)||(20156912-20156959)
chr2 (73-124)||(34319875-34319926)
chr2 (130-189)||(44822480-44822541)
chr2 (130-189)||(1071527-1071587)
[»] scaffold0608 (1 HSPs)
scaffold0608 (124-189)||(9017-9083)


Alignment Details
Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 73 - 191
Target Start/End: Original strand, 7550009 - 7550126
Alignment:
Q  73 tcccgtaagtgtagctcagttggtagctaccagagataatgtttgcagggg-cggagctcgaaccccggattctccacttctccacactttaaagtgtgt 171  Q
    |||||||||||||||||||||| ||||||||||||| | | |||||||||| ||| | ||||||||||||||| |||||||||||||||||  |||||||    
T  7550009 tcccgtaagtgtagctcagttgatagctaccagagacattatttgcaggggccggggttcgaaccccggattccccacttctccacacttt--agtgtgt 7550106  T
Q  172 gatctagccactaggctatt 191  Q
    ||||||||| ||||| ||||    
T  7550107 gatctagcctctaggttatt 7550126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 73 - 185
Target Start/End: Original strand, 2098743 - 2098855
Alignment:
Q  73 tcccgtaagtgtagctcagttggtagctaccagagataatgtttgcaggggcggagctcgaaccccggattctccacttctccacactttaaagtgtgtg 172  Q
    |||| ||||||||||||||||||||||||| |  |||| | | || |||||||||   |||||||||||||||||||||||||||| | ||| |||||||    
T  2098743 tcccataagtgtagctcagttggtagctacaatggatattatgtgtaggggcggaatccgaaccccggattctccacttctccaca-tataatgtgtgtg 2098841  T
Q  173 -atctagccactag 185  Q
     |||||||||||||    
T  2098842 aatctagccactag 2098855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 80 - 189
Target Start/End: Complemental strand, 8757378 - 8757268
Alignment:
Q  80 agtgtagctcagttggtagctaccagagataatgtttgcagggg-cggagctcgaaccccggattctccacttctccacactttaaagtgtgtg-atcta 177  Q
    ||||||||| ||||||||||||||||||| | | | |||||||| ||| | |||||||| |||||| |||| |||||||||  ||| ||||||| |||||    
T  8757378 agtgtagcttagttggtagctaccagagacattatgtgcaggggccggggttcgaaccctggattccccacgtctccacac-ataatgtgtgtgaatcta 8757280  T
Q  178 gccactaggcta 189  Q
     |||||||||||    
T  8757279 accactaggcta 8757268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 44729823 - 44729864
Alignment:
Q  75 ccgtaagtgtagctcagttggtagctaccagagataatgttt 116  Q
    |||||||||||| ||||||| |||||||||||||||||||||    
T  44729823 ccgtaagtgtagttcagttgatagctaccagagataatgttt 44729864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 124 - 189
Target Start/End: Complemental strand, 4482617 - 4482551
Alignment:
Q  124 cggagctcgaaccccggattctccacttctccacactttaaagtgtgtga--tctagccactaggcta 189  Q
    ||||| ||||||||||||| |||||||||||||||  ||||| |||||||  ||||||||||||||||    
T  4482617 cggagttcgaaccccggatactccacttctccaca-attaaattgtgtgagctctagccactaggcta 4482551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 112
Target Start/End: Original strand, 35996975 - 35997014
Alignment:
Q  73 tcccgtaagtgtagctcagttggtagctaccagagataat 112  Q
    |||| |||||||||||||||||||||||| ||||||||||    
T  35996975 tcccataagtgtagctcagttggtagctatcagagataat 35997014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 192
Target Start/End: Original strand, 43363238 - 43363335
Alignment:
Q  87 ctcagttggtagctaccagagataatgtttgcaggggc-ggagctcgaaccccggattctccacttctccacactttaaagtgtgtgatctagccactag 185  Q
    |||||||| || |||| ||||| ||| ||||||||||  |||| |||||||||| |||||||||||         ||||||| |||||||||||||||||    
T  43363238 ctcagttgttaactacaagagacaatatttgcaggggttggagttcgaaccccgaattctccactt---------ttaaagtatgtgatctagccactag 43363328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 189
Target Start/End: Complemental strand, 7166240 - 7166180
Alignment:
Q  130 tcgaaccccggattctccacttctccacactttaa-agtgtgtgatctagccactaggcta 189  Q
    ||||||||||||  ||||||||||||||| |||||  ||||| | ||||||||||||||||    
T  7166240 tcgaaccccggacactccacttctccacaatttaattgtgtgagctctagccactaggcta 7166180  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 189
Target Start/End: Original strand, 19011412 - 19011472
Alignment:
Q  130 tcgaaccccggattctccacttctccacactttaa-agtgtgtgatctagccactaggcta 189  Q
    ||||||||| ||| ||||||||||||||| |||||  ||||| | ||||||||||||||||    
T  19011412 tcgaaccccagatactccacttctccacaatttaattgtgtgagctctagccactaggcta 19011472  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 189
Target Start/End: Original strand, 22563443 - 22563503
Alignment:
Q  130 tcgaaccccggattctccacttctccacactttaa-agtgtgtgatctagccactaggcta 189  Q
    ||||||||||||  ||||||||||||||| |||||  ||||| | ||||||||||||||||    
T  22563443 tcgaaccccggacactccacttctccacaatttaattgtgtgagctctagccactaggcta 22563503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 191
Target Start/End: Complemental strand, 39346992 - 39346930
Alignment:
Q  130 tcgaaccccggattctccacttctccacactttaaagtgtgtga--tctagccactaggctatt 191  Q
    ||||||||||||  |||||||||||||||  ||||| |||||||  ||||||||||||||||||    
T  39346992 tcgaaccccggacactccacttctccaca-attaaattgtgtgagttctagccactaggctatt 39346930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 6e-26; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 76 - 192
Target Start/End: Complemental strand, 28580520 - 28580399
Alignment:
Q  76 cgtaagtgtagctcagttggtagctaccagagataatgtttgcagg-ggcggagctcgaaccccggattctccacttctccacacttt----aaagtgtg 170  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||| | | | | ||||||||| ||||| |||||||||||||||||    ||||||||    
T  28580520 cgtaagtgtagctcagttgatagctaccagagacaatgtttgcaggagccagggttcgaaccccagattccccacttctccacactttagaaaaagtgtg 28580421  T
Q  171 tgatctagccactaggctattg 192  Q
    |||||| |||||||||||||||    
T  28580420 tgatcttgccactaggctattg 28580399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 75 - 192
Target Start/End: Complemental strand, 36730290 - 36730167
Alignment:
Q  75 ccgtaagtgtagctcagttggtagctaccagagataatgtttgcaggggcggagctcgaaccccggattctccacttctccacactt------taaagtg 168  Q
    ||||||||||||||||||||||||||||||| || ||| |||||||||||     | ||||||||||||| ||||||||||||||||       ||||||    
T  36730290 ccgtaagtgtagctcagttggtagctaccagggacaatatttgcaggggccagatttgaaccccggattccccacttctccacacttaaaaaaaaaagtg 36730191  T
Q  169 tgtgatctagccactaggctattg 192  Q
    |||||||| ||||||| |||||||    
T  36730190 tgtgatctggccactaagctattg 36730167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 76 - 159
Target Start/End: Complemental strand, 43406112 - 43406028
Alignment:
Q  76 cgtaagtgtagctcagttggtagctaccagagataatgtttgc-aggggcggagctcgaaccccggattctccacttctccacac 159  Q
    ||||||||||||||||||||||||||||||||||||| | ||| |||  ||||| ||||||| | ||||||||||||||||||||    
T  43406112 cgtaagtgtagctcagttggtagctaccagagataatttgtgcaaggaccggagttcgaacctcagattctccacttctccacac 43406028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 78 - 159
Target Start/End: Original strand, 30327657 - 30327739
Alignment:
Q  78 taagtgtagctcagttggtagctaccagagataatgtttgcagggg-cggagctcgaaccccggattctccacttctccacac 159  Q
    |||||||||||||||||||||||| |||||||||| | |||||||| ||| | |||||||||| |||| ||||||||||||||    
T  30327657 taagtgtagctcagttggtagctatcagagataatttatgcaggggccggggttcgaaccccgaattcgccacttctccacac 30327739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 73 - 159
Target Start/End: Complemental strand, 31478799 - 31478712
Alignment:
Q  73 tcccgtaagtgtagctcagttggtagctaccagagataatgtttgcaggggc-ggagctcgaaccccggattctccacttctccacac 159  Q
    ||||||| |||||||||| |||||||| ||| |||||||| | |||| |||| |||| ||||||  ||||||||||||||||| ||||    
T  31478799 tcccgtatgtgtagctcaattggtagccaccggagataatttgtgcaagggccggagttcgaacttcggattctccacttctctacac 31478712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 185
Target Start/End: Original strand, 6526092 - 6526163
Alignment:
Q  116 tgcaggggc-ggagctcgaaccccggattctccacttctccacactttaaagtgtgtga--tctagccactag 185  Q
    ||||||||| |||| ||||||||||||| |||||||||||||||  ||||| |||||||  ||||||||||||    
T  6526092 tgcaggggctggagttcgaaccccggatactccacttctccaca-attaaattgtgtgagctctagccactag 6526163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 191
Target Start/End: Original strand, 16280303 - 16280365
Alignment:
Q  130 tcgaaccccggattctccacttctccacactttaaagtgtgtga--tctagccactaggctatt 191  Q
    ||||||||||||  ||||||| ||||||| |||||| |||||||  ||||||||||||||||||    
T  16280303 tcgaaccccggacactccactcctccaca-tttaaattgtgtgagctctagccactaggctatt 16280365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 73 - 192
Target Start/End: Complemental strand, 44294382 - 44294260
Alignment:
Q  73 tcccgtaagtgtagctcagttggtagctaccagagataatgtttgcaggggc-ggagctcgaaccccggattctccacttctccacactttaaa--gtgt 169  Q
    ||||| ||||||| ||||||||  ||||||| | || ||| || |||||||| |||| |||||||| ||||| ||||||||||||||| |||||  ||||    
T  44294382 tcccgcaagtgtacctcagttgagagctacctgggacaatattggcaggggccggagttcgaaccctggattttccacttctccacaccttaaaaagtgt 44294283  T
Q  170 gtgatctagccactaggctattg 192  Q
    |||||||||||||||||||||||    
T  44294282 gtgatctagccactaggctattg 44294260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 73 - 159
Target Start/End: Complemental strand, 35130722 - 35130635
Alignment:
Q  73 tcccgtaagtgtagctcagttggtagctaccagagataatgtttgcagggg-cggagctcgaaccccggattctccacttctccacac 159  Q
    |||||||||||||| ||||||||||||||||||||||||| | |||||||| ||| | ||||||||||||||  |||||||| |||||    
T  35130722 tcccgtaagtgtagttcagttggtagctaccagagataatttgtgcaggggccggggttcgaaccccggatttcccacttcttcacac 35130635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 73 - 189
Target Start/End: Complemental strand, 50264100 - 50263984
Alignment:
Q  73 tcccgtaagtgtagctcagttggtagctaccagagataatgtttgcagggg-cggagctcgaaccccggattctccacttctccacactttaaagtgtgt 171  Q
    ||||||||||||| ||||||||||||||| ||| |||||| | |||||||| ||| ||||||| ||||||||| ||||||||||||||  | | ||||||    
T  50264100 tcccgtaagtgtaactcagttggtagcta-cagggataatttgtgcaggggccggggctcgaaacccggattccccacttctccacac-atgatgtgtgt 50264003  T
Q  172 g-atctagccactaggcta 189  Q
    | |||||||||||||||||    
T  50264002 gaatctagccactaggcta 50263984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 75 - 159
Target Start/End: Complemental strand, 31351782 - 31351697
Alignment:
Q  75 ccgtaagtgtagctcagttggtagctaccagagataatgtttgcagggg-cggagctcgaaccccggattctccacttctccacac 159  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||| ||| | |||||| |||||||  ||| ||||||||||    
T  31351782 ccgtaagtgtagctcagttggtagctaccagagataatttgtgcaggggtcggggttcgaactccggatttcccatttctccacac 31351697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 73 - 185
Target Start/End: Complemental strand, 13538366 - 13538253
Alignment:
Q  73 tcccgtaagtgtagctcagttggtagctaccagagataatgtttgcaggggc-ggagctcgaaccccggattctccacttctccacactttaaagtgtgt 171  Q
    ||||||||||||||||||||||||||||| |||||||||| | || |||||| |||| |||||||||  |||  ||||||||||| ||  ||| ||||||    
T  13538366 tcccgtaagtgtagctcagttggtagctatcagagataatttgtgtaggggctggagttcgaaccccaaatttcccacttctccatac-ataatgtgtgt 13538268  T
Q  172 g-atctagccactag 185  Q
    | |||||||||||||    
T  13538267 gaatctagccactag 13538253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 73 - 159
Target Start/End: Complemental strand, 35010494 - 35010407
Alignment:
Q  73 tcccgtaagtgtagctcagttggtagctaccagagataatgtttgcagg-ggcggagctcgaaccccggattctccacttctccacac 159  Q
    |||||||||| |||||||||||||||||| |||||||||| | |||||| | ||| | |||||| |||||||  ||||||||||||||    
T  35010494 tcccgtaagtttagctcagttggtagctatcagagataatttgtgcaggagtcggggttcgaactccggatttcccacttctccacac 35010407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 77 - 159
Target Start/End: Original strand, 42657503 - 42657586
Alignment:
Q  77 gtaagtgtagctcagttggtagctaccagagataatgtttgcagggg-cggagctcgaaccccggattctccacttctccacac 159  Q
    ||||||||||||||||||||||||| |||||||||| | |  ||||| ||||| |||||||||  ||||||||||||| |||||    
T  42657503 gtaagtgtagctcagttggtagctatcagagataatttatataggggtcggagttcgaaccccacattctccacttcttcacac 42657586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 75 - 159
Target Start/End: Complemental strand, 40981895 - 40981810
Alignment:
Q  75 ccgtaagtgtagctcagttggtagctaccagagataatgtttgcagggg-cggagctcgaaccccggattctccacttctccacac 159  Q
    ||||||||||||||||||||||||||| ||| |||||| | || ||||| ||||| | ||| | | ||||||||||||||||||||    
T  40981895 ccgtaagtgtagctcagttggtagctagcagggataatttatgtaggggtcggagtttgaatctcagattctccacttctccacac 40981810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 73 - 156
Target Start/End: Complemental strand, 17882354 - 17882271
Alignment:
Q  73 tcccgtaagtgtagctcagttggtagctaccagagataatgtttgcaggggcggagctcgaaccccggattctccacttctcca 156  Q
    |||||||||||||| |||||| ||||||  ||  |||||| | ||||||||| | | ||||||||||||||||| |||||||||    
T  17882354 tcccgtaagtgtagttcagttagtagctttcatggataatttgtgcaggggcagggttcgaaccccggattctctacttctcca 17882271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 76 - 156
Target Start/End: Original strand, 55967780 - 55967861
Alignment:
Q  76 cgtaagtgtagctcagttggtagctaccagagataatgtttgcaggggc-ggagctcgaaccccggattctccacttctcca 156  Q
    ||||||||||||||| |||||| ||||||  |||||| | || |||||| || | ||||||||||||||| |||||||||||    
T  55967780 cgtaagtgtagctcaattggtaactaccaaggataatttgtgtaggggccggggttcgaaccccggattccccacttctcca 55967861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 130 - 191
Target Start/End: Complemental strand, 23069421 - 23069358
Alignment:
Q  130 tcgaaccccggattctccacttctccacactttaaa--gtgtgtgatctagccactaggctatt 191  Q
    ||||| |||||||||| |||||||||| ||||||||  || |||||||||| ||||||||||||    
T  23069421 tcgaatcccggattcttcacttctccatactttaaatagtatgtgatctagtcactaggctatt 23069358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 158
Target Start/End: Complemental strand, 3746493 - 3746412
Alignment:
Q  77 gtaagtgtagctcagttggtagctaccagagataatgtttgcaggggcggagctcgaaccccggattctccacttctccaca 158  Q
    |||||| |||||| |||||||||||||||||||| | | || ||||| |  | ||||||||||||||  ||| |||||||||    
T  3746493 gtaagtttagctcggttggtagctaccagagatattatgtgtaggggtgaggttcgaaccccggatttcccatttctccaca 3746412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 102
Target Start/End: Original strand, 45872386 - 45872415
Alignment:
Q  73 tcccgtaagtgtagctcagttggtagctac 102  Q
    ||||||||||||||||||||||||||||||    
T  45872386 tcccgtaagtgtagctcagttggtagctac 45872415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 189
Target Start/End: Original strand, 637156 - 637216
Alignment:
Q  130 tcgaaccccggattctccacttctccacactttaa-agtgtgtgatctagccactaggcta 189  Q
    ||||||||||||  ||||||||||||||| || ||  ||||||| ||||||||||||||||    
T  637156 tcgaaccccggacactccacttctccacaattaaattgtgtgtgctctagccactaggcta 637216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 28091435 - 28091391
Alignment:
Q  78 taagtgtagctcagttggtagctaccagagataatgtttgcaggg 122  Q
    |||||||||||||||||||||||| ||| |||||| | |||||||    
T  28091435 taagtgtagctcagttggtagctatcagtgataatttatgcaggg 28091391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 73 - 189
Target Start/End: Original strand, 28300084 - 28300201
Alignment:
Q  73 tcccgtaagtgtagctcagttggtagctaccagagataatgtttgcagggg-cggagctcgaaccccggattctccacttctccacactttaaagtgtgt 171  Q
    ||||||| ||||||||||||||||||||||||  |||||| | |||||||| ||| | ||||||||||||||| ||||||||||| ||  ||| ||||||    
T  28300084 tcccgtaggtgtagctcagttggtagctaccaatgataatttgtgcaggggccggggttcgaaccccggattccccacttctccatac-ataatgtgtgt 28300182  T
Q  172 g-atctagccactaggcta 189  Q
    | |||||||||| ||||||    
T  28300183 gaatctagccacaaggcta 28300201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 73 - 128
Target Start/End: Complemental strand, 9209674 - 9209619
Alignment:
Q  73 tcccgtaagtgtagctcagttggtagctaccagagataatgtttgcaggggcggag 128  Q
    ||||||||||||||||| ||||||||||||||| |||| | ||||||||| |||||    
T  9209674 tcccgtaagtgtagctccgttggtagctaccagggatactttttgcagggccggag 9209619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 151
Target Start/End: Original strand, 12959704 - 12959783
Alignment:
Q  73 tcccgtaagtgtagctcagttggtagctaccagagataatgtttgcagggg-cggagctcgaaccccggattctccactt 151  Q
    ||||||||||||||||||||||||||||| ||| |||||  | ||||||||  || | ||||||||| ||||| ||||||    
T  12959704 tcccgtaagtgtagctcagttggtagctatcagggataacttgtgcaggggttggggttcgaaccccagattccccactt 12959783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 112
Target Start/End: Original strand, 31441264 - 31441303
Alignment:
Q  73 tcccgtaagtgtagctcagttggtagctaccagagataat 112  Q
    ||||||| ||||||||||||||||||||||||| ||||||    
T  31441264 tcccgtaggtgtagctcagttggtagctaccagtgataat 31441303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 74 - 112
Target Start/End: Complemental strand, 13147853 - 13147815
Alignment:
Q  74 cccgtaagtgtagctcagttggtagctaccagagataat 112  Q
    |||||||||||| ||||||||||||||||||| ||||||    
T  13147853 cccgtaagtgtaactcagttggtagctaccagtgataat 13147815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 191
Target Start/End: Complemental strand, 1337128 - 1337066
Alignment:
Q  130 tcgaaccccggattctccacttctccacactttaaagtgtgtga--tctagccactaggctatt 191  Q
    ||||||||||||  |||||||||||||||  ||||| |||||||  ||||||||||||||||||    
T  1337128 tcgaaccccggacactccacttctccaca-attaaattgtgtgagctctagccactaggctatt 1337066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 189
Target Start/End: Original strand, 8265325 - 8265385
Alignment:
Q  130 tcgaaccccggattctccacttctccacactttaa-agtgtgtgatctagccactaggcta 189  Q
    ||||||||||||  ||||||||||||||| |||||  ||||| | ||||||||||||||||    
T  8265325 tcgaaccccggacactccacttctccacaatttaattgtgtgagctctagccactaggcta 8265385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 186
Target Start/End: Complemental strand, 41616379 - 41616323
Alignment:
Q  130 tcgaaccccggattctccacttctccacactttaaagtgtgtgatctagccactagg 186  Q
    ||||||||||||| ||||||||||||||| | ||| ||||| | || ||||||||||    
T  41616379 tcgaaccccggatactccacttctccacattataatgtgtgagctccagccactagg 41616323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 73 - 181
Target Start/End: Original strand, 32958486 - 32958595
Alignment:
Q  73 tcccgtaagtgtagctcagttggtagctaccagagataatgtttgcagg-ggcggagctcgaaccccggattctccacttctccacactttaaagtgtgt 171  Q
    ||||||||||||||||| |||||||||||||| | ||||| | |||||| | | ||| |||||||||||||||||||||| ||||||| |||| ||||||    
T  32958486 tcccgtaagtgtagctcggttggtagctaccaaaaataatttgtgcaggagtcagagttcgaaccccggattctccacttatccacac-ttaatgtgtgt 32958584  T
Q  172 g-atctagcca 181  Q
    | |||||||||    
T  32958585 gaatctagcca 32958595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 72 - 123
Target Start/End: Original strand, 45664673 - 45664724
Alignment:
Q  72 atcccgtaagtgtagctcagttggtagctaccagagataatgtttgcagggg 123  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  45664673 atcccgtaagtgtagctcagttggtagctactagagataatgtttgtagggg 45664724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 73 - 156
Target Start/End: Complemental strand, 9667342 - 9667258
Alignment:
Q  73 tcccgtaagtgtagctcagttggtagctaccagagataatgtttgcaggggc-ggagctcgaaccccggattctccacttctcca 156  Q
    ||||||||||||||||||||||||||||| |||||||||| | || |||||| |||| |||||||||  |||  |||||||||||    
T  9667342 tcccgtaagtgtagctcagttggtagctatcagagataatttgtgtaggggctggagttcgaaccccaaatttcccacttctcca 9667258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 76 - 159
Target Start/End: Original strand, 27744579 - 27744662
Alignment:
Q  76 cgtaagtgtagctcagttggtagctaccagagataatgtttgcaggggcggagctcgaaccccggattctccacttctccacac 159  Q
    |||||||||||| |||||| |||||| |||||||||| | |||||||   ||| ||||||  ||||||| ||||||||||||||    
T  27744579 cgtaagtgtagcgcagttgatagctatcagagataatttgtgcagggttagagttcgaacatcggattccccacttctccacac 27744662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 19554704 - 19554753
Alignment:
Q  74 cccgtaagtgtagctcagttggtagctaccagagataatgtttgcagggg 123  Q
    |||||||||||||||||||||||||||||||  || ||| ||||||||||    
T  19554704 cccgtaagtgtagctcagttggtagctaccaaggacaatatttgcagggg 19554753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 191
Target Start/End: Complemental strand, 18223736 - 18223670
Alignment:
Q  124 cggagctcgaaccccggattctccacttctccacactttaaagtgtgtgatctagccactaggctatt 191  Q
    ||||| ||||||||||||  | ||||||||||||| || ||| |||||| ||||||||||||||||||    
T  18223736 cggagttcgaaccccggacaccccacttctccacaatt-aaattgtgtgctctagccactaggctatt 18223670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 112
Target Start/End: Complemental strand, 27227371 - 27227336
Alignment:
Q  77 gtaagtgtagctcagttggtagctaccagagataat 112  Q
    ||||||||||||||||||||| ||||||||||||||    
T  27227371 gtaagtgtagctcagttggtacctaccagagataat 27227336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 130 - 189
Target Start/End: Original strand, 24781087 - 24781147
Alignment:
Q  130 tcgaaccccggattctccacttctccacactttaaagtgtgtga--tctagccactaggcta 189  Q
    ||||||||||||| |||||||||||||||  ||||| |||||||  ||||||||||||||||    
T  24781087 tcgaaccccggatactccacttctccaca-attaaattgtgtgagctctagccactaggcta 24781147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 77 - 158
Target Start/End: Complemental strand, 36877079 - 36876997
Alignment:
Q  77 gtaagtgtagctcagttggtagctaccagagataatgtttgcagggg-cggagctcgaaccccggattctccacttctccaca 158  Q
    |||||||  |||||||||||||||| ||  |||||| | |||||||| ||| | ||||||||||||||  |||||||||||||    
T  36877079 gtaagtgatgctcagttggtagctaacatggataatttgtgcaggggtcggggttcgaaccccggatttcccacttctccaca 36876997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 28696912 - 28696863
Alignment:
Q  73 tcccgtaagtgtagctcagttggtagctaccagagataatgtttgcaggg 122  Q
    |||| |||||||| |||||||| |||||| |||||| |||||||||||||    
T  28696912 tcccataagtgtaactcagttgatagctatcagagacaatgtttgcaggg 28696863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 102
Target Start/End: Complemental strand, 45967472 - 45967443
Alignment:
Q  73 tcccgtaagtgtagctcagttggtagctac 102  Q
    ||||||||||||||||||||||||||||||    
T  45967472 tcccgtaagtgtagctcagttggtagctac 45967443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 76 - 112
Target Start/End: Complemental strand, 44165995 - 44165959
Alignment:
Q  76 cgtaagtgtagctcagttggtagctaccagagataat 112  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  44165995 cgtaagtgcagctcagttggtagctaccagggataat 44165959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 189
Target Start/End: Original strand, 48119527 - 48119587
Alignment:
Q  130 tcgaaccccggattctccacttctccacactttaa-agtgtgtgatctagccactaggcta 189  Q
    ||||||||||||  ||||||||||||||| |||||  ||||| | ||||||||||||||||    
T  48119527 tcgaaccccggacactccacttctccacaatttaattgtgtgagctctagccactaggcta 48119587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 73 - 177
Target Start/End: Original strand, 3313490 - 3313597
Alignment:
Q  73 tcccgtaagtgtagctcagttggtagctaccagagataatgtttgcagg-ggcggagctcgaaccccggattctccacttctccacacttt--aaagtgt 169  Q
    |||||||||||| |||||||||||||||||||  || ||| |||||||| | ||||| ||||| ||  ||||| |||||||||||||||||  |||||||    
T  3313490 tcccgtaagtgtggctcagttggtagctaccaaggacaatatttgcaggagccggagttcgaatcctagattccccacttctccacactttaaaaagtgt 3313589  T
Q  170 gtgatcta 177  Q
    ||||||||    
T  3313590 gtgatcta 3313597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 76 - 182
Target Start/End: Complemental strand, 34875730 - 34875621
Alignment:
Q  76 cgtaagtgtagctcagttggtagctaccagagataatgtttgcag-gggcggagctcgaaccccggattctccacttctccacac--tttaaagtgtgtg 172  Q
    |||||||||| ||||||||||| ||| || ||||||| ||||||| || || || |||||||||  ||||||||||||| |||||  | |||||||||||    
T  34875730 cgtaagtgtaactcagttggtaactatcaaagataatatttgcagaggccgaagttcgaaccccaaattctccacttcttcacaccttataaagtgtgtg 34875631  T
Q  173 atctagccac 182  Q
    ||||||||||    
T  34875630 atctagccac 34875621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 74 - 124
Target Start/End: Original strand, 7950929 - 7950979
Alignment:
Q  74 cccgtaagtgtagctcagttggtagctaccagagataatgtttgcaggggc 124  Q
    |||||||||||||||||||||||||||||||| |||||| ||| |||||||    
T  7950929 cccgtaagtgtagctcagttggtagctaccagggataatatttacaggggc 7950979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 159
Target Start/End: Complemental strand, 21177147 - 21177059
Alignment:
Q  71 gatcccgtaagtgtagctcagttggtagctaccagagataatgtttgcaggggcggagctcgaaccccggattctccacttctccacac 159  Q
    |||||||||||| || |||||||||||||||||||||| ||| | | ||||| |  || ||||||| || |||| ||||||||||||||    
T  21177147 gatcccgtaagtatacctcagttggtagctaccagagacaatttgtacagggtcaaagttcgaacctcgaattccccacttctccacac 21177059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 75 - 118
Target Start/End: Original strand, 51816021 - 51816064
Alignment:
Q  75 ccgtaagtgtagctcagttggtagctaccagagataatgtttgc 118  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||    
T  51816021 ccgtaagtgtagctcagttggtagctaccagggataatgattgc 51816064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 159
Target Start/End: Complemental strand, 38745404 - 38745317
Alignment:
Q  73 tcccgtaagtgtagctcagttggtagctaccagagataatgtttgcagggg-cggagctcgaaccccggattctccacttctccacac 159  Q
    |||||||| ||||||| ||||||| | |||||| |||||| | |||||||| |||   |||||||||| |||| ||||||||||||||    
T  38745404 tcccgtaaatgtagcttagttggtggttaccagggataatttgtgcaggggtcgggattcgaaccccgaattccccacttctccacac 38745317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 191
Target Start/End: Original strand, 44764764 - 44764838
Alignment:
Q  116 tgcaggggcggagctcgaaccccggattctccacttctccacactttaaagtgtgtgatctagccactaggctatt 191  Q
    ||||||||||| | ||||||||||||  ||||||||||||||| || |  ||||| | ||||||||||||||||||    
T  44764764 tgcaggggcgg-gttcgaaccccggacactccacttctccacatttaattgtgtgagctctagccactaggctatt 44764838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 165
Target Start/End: Original strand, 44856261 - 44856352
Alignment:
Q  75 ccgtaagtgtagctcagttggtagctaccagagataatgtttgcaggg-gcggagctcgaaccccggattctccacttctccacactttaaa 165  Q
    ||||||||| ||||||||||||||||| || ||||| | | |||||||  ||||| |||||| || |||| || ||||||||||| ||||||    
T  44856261 ccgtaagtgcagctcagttggtagctatcacagatattatctgcagggatcggagttcgaactccagattttctacttctccacattttaaa 44856352  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 159
Target Start/End: Complemental strand, 51829663 - 51829581
Alignment:
Q  77 gtaagtgtagctcagttggtagctaccagagataatgtttgcaggggc-ggagctcgaaccccggattctccacttctccacac 159  Q
    ||||||||||||||||||||||||||||| ||| || | |||||| || || | ||||||||| |||||  |||||||||||||    
T  51829663 gtaagtgtagctcagttggtagctaccag-gatcatttgtgcaggagctggtgttcgaaccccagattcctcacttctccacac 51829581  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 73 - 123
Target Start/End: Complemental strand, 9737687 - 9737637
Alignment:
Q  73 tcccgtaagtgtagctcagttggtagctaccagagataatgtttgcagggg 123  Q
    |||||||  ||||||||||||||||||||||||||||| | | ||||||||    
T  9737687 tcccgtagatgtagctcagttggtagctaccagagatattatgtgcagggg 9737637  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 130 - 189
Target Start/End: Original strand, 45701401 - 45701461
Alignment:
Q  130 tcgaaccccggattctccacttctccacactttaaagtgtgtga--tctagccactaggcta 189  Q
    ||||||||||||| |||||||||||||||  ||||| |||||||  ||||||||||||||||    
T  45701401 tcgaaccccggatactccacttctccaca-attaaattgtgtgagctctagccactaggcta 45701461  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 116 - 189
Target Start/End: Complemental strand, 49443451 - 49443377
Alignment:
Q  116 tgcaggggc-ggagctcgaaccccggattctccacttctccacactttaaagtgtgtgatctagccactaggcta 189  Q
    ||||||||| |||| ||||||||||||  | ||||||||||||| || || ||||| | ||||||||||||||||    
T  49443451 tgcaggggccggagttcgaaccccggacaccccacttctccacatttaaatgtgtgagctctagccactaggcta 49443377  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 159
Target Start/End: Original strand, 17002900 - 17002980
Alignment:
Q  77 gtaagtgtagctcagttggtagctaccagagataatgtttgcaggggc-ggagctcgaaccccggattctccacttctccacac 159  Q
    ||||| ||||||||||||||||||||||| |||||| | | ||||||| || | |||||   ||||||| ||||||||||||||    
T  17002900 gtaagcgtagctcagttggtagctaccagggataatttgtacaggggctggggttcgaa---cggattccccacttctccacac 17002980  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 112
Target Start/End: Complemental strand, 21892631 - 21892594
Alignment:
Q  75 ccgtaagtgtagctcagttggtagctaccagagataat 112  Q
    |||||||||||||||||||| || ||||||||||||||    
T  21892631 ccgtaagtgtagctcagttgataactaccagagataat 21892594  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 157
Target Start/End: Original strand, 54240605 - 54240686
Alignment:
Q  77 gtaagtgtagctcagttggtagctaccagagataatgtttgcagggg-cggagctcgaaccccggattctccacttctccac 157  Q
    |||| |||||||||||||| ||||||||  || ||| | |||||||| ||| | ||||||| |||||| |||||||||||||    
T  54240605 gtaaatgtagctcagttggcagctaccaaggacaatatgtgcaggggtcggggttcgaacctcggattttccacttctccac 54240686  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 189
Target Start/End: Complemental strand, 33606953 - 33606893
Alignment:
Q  130 tcgaaccccggattctccacttctccacactttaa-agtgtgtgatctagccactaggcta 189  Q
    ||||||||||||  ||||||||||||||| |||||  ||||| | ||||||||||||||||    
T  33606953 tcgaaccccggacactccacttctccacaatttaattgtgtgagctctagccactaggcta 33606893  T

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Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 73 - 159
Target Start/End: Complemental strand, 20599503 - 20599416
Alignment:
Q  73 tcccgtaagtgtagctcagttggtagctaccagagataatgtttgc-aggggcggagctcgaaccccggattctccacttctccacac 159  Q
    ||||||||||||||||||||||||||||||||| |||| | | ||| |||| ||| | | ||||||||||||| ||||||||||||||    
T  20599503 tcccgtaagtgtagctcagttggtagctaccagggatattatgtgcaagggtcggggtttgaaccccggattccccacttctccacac 20599416  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 75 - 159
Target Start/End: Complemental strand, 21023795 - 21023710
Alignment:
Q  75 ccgtaagtgtagctcagttggtagctaccagagataatgtttgcaggggcggagct-cgaaccccggattctccacttctccacac 159  Q
    |||||||||||||||| |||||||||||||| |||||| | || |||  | ||| | |||||||||||||||||||||||||||||    
T  21023795 ccgtaagtgtagctcaattggtagctaccagggataatttgtgtaggaactgagattcgaaccccggattctccacttctccacac 21023710  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 73 - 190
Target Start/End: Complemental strand, 6922745 - 6922627
Alignment:
Q  73 tcccgtaagtgtagctcagttggtagctaccagagataatgtttgcagggg-cggagctcgaaccccggattctccacttctccacactttaaagtgtgt 171  Q
    |||||||||||||| |||||||||||||||||   ||||| | |||||||| ||| | || ||| || ||||| ||||||||||||| | ||| ||||||    
T  6922745 tcccgtaagtgtagttcagttggtagctaccatgaataatttgtgcaggggtcggggttcaaactccagattccccacttctccaca-tataatgtgtgt 6922647  T
Q  172 g-atctagccactaggctat 190  Q
    | ||||||||||||||||||    
T  6922646 gaatctagccactaggctat 6922627  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 75 - 191
Target Start/End: Complemental strand, 31069002 - 31068885
Alignment:
Q  75 ccgtaagtgtagctcagttggtagctaccagagataatgtttgcagggg-cggagctcgaaccccggattctccacttctccacactttaaagtgtgtg- 172  Q
    ||||||||||||||||||||||||||| ||  |||||| | || ||||| ||||| | |||| |||||||| |||||||||||||| |||| |||||||     
T  31069002 ccgtaagtgtagctcagttggtagctaacattgataatttgtgtaggggtcggagtttgaactccggattccccacttctccacac-ttaatgtgtgtga 31068904  T
Q  173 atctagccactaggctatt 191  Q
    ||||| ||||||| |||||    
T  31068903 atctaaccactagactatt 31068885  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 76 - 149
Target Start/End: Original strand, 34028097 - 34028171
Alignment:
Q  76 cgtaagtgtagctcagttggtagctaccagagataatgtttgcagggg-cggagctcgaaccccggattctccac 149  Q
    |||||||||||||||||| ||||||||||| |||||| |||||||||| ||||| | |||| |||||||||||||    
T  34028097 cgtaagtgtagctcagttagtagctaccagggataatttttgcaggggtcggagtttgaactccggattctccac 34028171  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 73 - 159
Target Start/End: Complemental strand, 9199041 - 9198953
Alignment:
Q  73 tcccgtaagtgtagctcagttggtagctaccagagataatgtttgcag-gggc-ggagctcgaaccccggattctccacttctccacac 159  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||| |||| || | ||||||| || |||  ||||||||||||||    
T  9199041 tcccgtaagtgtagctcagttggtagctaccagagataatttgtgcagcgggctggggttcgaacctcgaatttcccacttctccacac 9198953  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 123
Target Start/End: Original strand, 20156912 - 20156959
Alignment:
Q  76 cgtaagtgtagctcagttggtagctaccagagataatgtttgcagggg 123  Q
    |||| |||| |||||||||||||||||||| |||||| ||||||||||    
T  20156912 cgtacgtgtggctcagttggtagctaccagggataatttttgcagggg 20156959  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 124
Target Start/End: Complemental strand, 34319926 - 34319875
Alignment:
Q  73 tcccgtaagtgtagctcagttggtagctaccagagataatgtttgcaggggc 124  Q
    ||||||||||||| ||||||||||||||| ||| |||||| | |||||||||    
T  34319926 tcccgtaagtgtacctcagttggtagctatcagggataatttgtgcaggggc 34319875  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 130 - 189
Target Start/End: Original strand, 44822480 - 44822541
Alignment:
Q  130 tcgaaccccggattctccacttctccacactttaaagtgtgtga--tctagccactaggcta 189  Q
    ||||||||| ||  ||||||||||||||| |||||| |||||||  ||||||||||||||||    
T  44822480 tcgaaccccagacactccacttctccacaatttaaattgtgtgagctctagccactaggcta 44822541  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 189
Target Start/End: Original strand, 1071527 - 1071587
Alignment:
Q  130 tcgaaccccggattctccacttctccacactttaa-agtgtgtgatctagccactaggcta 189  Q
    ||||||||||||  ||||||||||||||| || ||  ||||||| ||||||||||||||||    
T  1071527 tcgaaccccggacactccacttctccacaattaaattgtgtgtgctctagccactaggcta 1071587  T

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Target: scaffold0608 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0608
Description:

Target: scaffold0608; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 124 - 189
Target Start/End: Original strand, 9017 - 9083
Alignment:
Q  124 cggagctcgaaccccggattctccacttctccacactttaaagtgtgtga--tctagccactaggcta 189  Q
    ||||| ||||||||||||| |||||||||||||||  ||||| |||||||  ||||||||||||||||    
T  9017 cggagttcgaaccccggatactccacttctccaca-attaaattgtgtgagctctagccactaggcta 9083  T

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