View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18031_high_5 (Length: 427)
Name: NF18031_high_5
Description: NF18031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18031_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 20 - 410
Target Start/End: Complemental strand, 52095652 - 52095262
Alignment:
| Q |
20 |
gcattgaaggtatcattattttgtctataaaggtggctgaagtgaaatcattgtttattgccccaaacaaacaaaaaagtattgaaaatcaggaaaatgt |
119 |
Q |
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| T |
52095652 |
gcattgaaggtgtcattatttcgtctataaaggtggctgaagtgaaatccttgtttattgccccaaacaaacaaaaaagtattgaaaatcaggaaaatgt |
52095553 |
T |
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| Q |
120 |
tatagcaatcctgttggtgaaatctagaatcaagcctaacaagtattatccttagtcttggtggcactattaggctacatctgttctatgatagagtcta |
219 |
Q |
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| T |
52095552 |
tatagcaatcctgttggtgaaatctagaatcaagcctaacaagtattatccttagtcttggtggcactattaggctacatctgttctatgatagagtcta |
52095453 |
T |
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| Q |
220 |
gcaacatattgtttcttgatgtactgcagttttgttgatgtgtttactgatattggagacatggctttcgtttcactgtttccggataaactgtaatgat |
319 |
Q |
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| T |
52095452 |
gcaacatattgtttcttgatgtactgcagttttattgatgtgtttactgatattggagacatggctttcgtttcactgtttccggataaactgtaatgat |
52095353 |
T |
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| Q |
320 |
gatgctgtttcactgccttcttgatttagttgatgcagttgtggaattttatctattatgctgtacgtattggttggtgtgctgcaatatt |
410 |
Q |
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| T |
52095352 |
gatgctgtttcactgccttcttgatttagttgatgcagttgtggaattttatctattatgctgtacgtattggttggtgtgctgcaatatt |
52095262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 23 - 403
Target Start/End: Complemental strand, 36411157 - 36410774
Alignment:
| Q |
23 |
ttgaaggtatcattattttgtctataaaggtggctgaagtgaaatcattgtttattgccccaaacaaacaaaaaagtattgaaaatcaggaaaatgttat |
122 |
Q |
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||||| || ||||||||| |||| ||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
36411157 |
ttgaacgtgtcattatttcgtctgtaaagatggctgaagtgaaatccttgtttgttgccccaaacaaacaaaaaagtattgaaaatgaggaaaatgttat |
36411058 |
T |
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| Q |
123 |
agcaatcctgttggtgaaatctagaatcaagcctaacaagtattatccttagtcttggtggcactattaggctacatctgttctatgatagagtctagca |
222 |
Q |
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||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
36411057 |
agcaatcctgttggtcaaatctggaatcaagcctaacaagtattttccttagtcttggtggcactattaggctacatctgttctatgatagagtctagaa |
36410958 |
T |
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| Q |
223 |
acatattgtttcttgatgtactgcagtt---ttgttgatgtgtttactgatattggagacatggctttcgtttcactgtttccggataaactgtaatgat |
319 |
Q |
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|||||||| |||||||| |||| |||| ||| |||||||||||||||||||| |||| ||||||||||||||||| |||| |||||| ||| ||||| |
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| T |
36410957 |
acatattgcttcttgatacactgaagttctgttgatgatgtgtttactgatattgaagacgtggctttcgtttcactgcttccagataaaatgtcatgat |
36410858 |
T |
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| Q |
320 |
gatgctgtttcactgccttcttgatttagttgatgcagttgtggaattttatctattatgctgtacgtattggttggtgtgctg |
403 |
Q |
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| T |
36410857 |
gttgctgtttcgctgccttctggatttagctgatgaagttgtggaattttatctattatgctgtatgtattggttggtgtgctg |
36410774 |
T |
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