View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18031_high_6 (Length: 393)

Name: NF18031_high_6
Description: NF18031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18031_high_6
NF18031_high_6
[»] chr1 (19 HSPs)
chr1 (12-375)||(27546384-27546750)
chr1 (12-109)||(16915198-16915293)
chr1 (12-109)||(22426518-22426612)
chr1 (70-102)||(15571698-15571730)
chr1 (37-109)||(16817111-16817182)
chr1 (70-109)||(21663093-21663132)
chr1 (70-109)||(24464669-24464708)
chr1 (72-107)||(24901266-24901301)
chr1 (70-109)||(26652629-26652668)
chr1 (70-109)||(33192407-33192446)
chr1 (12-109)||(18734588-18734682)
chr1 (72-109)||(14782587-14782624)
chr1 (70-107)||(14968429-14968466)
chr1 (72-109)||(18527499-18527536)
chr1 (70-103)||(21536915-21536948)
chr1 (72-109)||(26611334-26611371)
chr1 (69-109)||(15526809-15526849)
chr1 (70-102)||(16363678-16363710)
chr1 (69-109)||(26022439-26022479)
[»] chr3 (11 HSPs)
chr3 (37-109)||(27412661-27412733)
chr3 (70-109)||(18535825-18535864)
chr3 (37-103)||(27073975-27074040)
chr3 (15-97)||(19913788-19913867)
chr3 (70-109)||(22470405-22470444)
chr3 (70-103)||(819855-819888)
chr3 (72-109)||(7805799-7805836)
chr3 (70-103)||(12771211-12771244)
chr3 (72-109)||(20886925-20886962)
chr3 (72-109)||(21380178-21380215)
chr3 (37-109)||(20021820-20021891)
[»] chr8 (13 HSPs)
chr8 (12-109)||(26829469-26829563)
chr8 (71-109)||(6886726-6886764)
chr8 (69-109)||(5151973-5152013)
chr8 (69-109)||(28275327-28275367)
chr8 (70-109)||(17650016-17650055)
chr8 (70-109)||(19265877-19265916)
chr8 (70-109)||(21695416-21695455)
chr8 (12-103)||(26139788-26139876)
chr8 (72-109)||(14271898-14271935)
chr8 (74-103)||(17976290-17976319)
chr8 (70-103)||(18446868-18446901)
chr8 (72-109)||(21316840-21316877)
chr8 (72-109)||(30117661-30117698)
[»] scaffold0258 (1 HSPs)
scaffold0258 (12-109)||(20255-20349)
[»] chr2 (7 HSPs)
chr2 (12-109)||(18120548-18120642)
chr2 (12-106)||(25532236-25532327)
chr2 (12-109)||(25537556-25537650)
chr2 (70-107)||(23010048-23010085)
chr2 (70-101)||(25882581-25882612)
chr2 (72-109)||(25922662-25922699)
chr2 (73-109)||(25886194-25886230)
[»] scaffold0386 (1 HSPs)
scaffold0386 (70-109)||(4875-4914)
[»] chr5 (10 HSPs)
chr5 (12-103)||(16521907-16522000)
chr5 (70-109)||(29988012-29988051)
chr5 (66-109)||(17831744-17831787)
chr5 (15-109)||(20548456-20548547)
chr5 (70-109)||(23214828-23214867)
chr5 (70-109)||(25572481-25572520)
chr5 (69-103)||(24513205-24513239)
chr5 (70-103)||(18832277-18832310)
chr5 (70-103)||(24263759-24263792)
chr5 (70-103)||(34488912-34488945)
[»] chr4 (11 HSPs)
chr4 (70-109)||(11252132-11252171)
chr4 (69-102)||(23970681-23970714)
chr4 (70-109)||(8928316-8928355)
chr4 (70-109)||(8968074-8968113)
chr4 (70-109)||(17277900-17277939)
chr4 (74-109)||(17434493-17434528)
chr4 (70-109)||(25025161-25025200)
chr4 (70-100)||(9263362-9263392)
chr4 (72-109)||(13588765-13588802)
chr4 (70-103)||(17218583-17218616)
chr4 (70-102)||(12836080-12836112)
[»] chr7 (19 HSPs)
chr7 (12-109)||(13287713-13287807)
chr7 (70-109)||(1254699-1254737)
chr7 (70-109)||(2565961-2566000)
chr7 (70-109)||(2927929-2927968)
chr7 (74-109)||(4994786-4994821)
chr7 (70-109)||(10332459-10332498)
chr7 (70-109)||(23173688-23173727)
chr7 (71-109)||(19154874-19154912)
chr7 (71-109)||(20754273-20754311)
chr7 (72-109)||(3585525-3585562)
chr7 (70-103)||(5236875-5236908)
chr7 (70-103)||(6018413-6018446)
chr7 (72-109)||(9722498-9722535)
chr7 (70-103)||(13252716-13252749)
chr7 (72-109)||(13280816-13280853)
chr7 (69-102)||(19201332-19201365)
chr7 (69-109)||(2506823-2506863)
chr7 (70-102)||(18986754-18986786)
chr7 (70-102)||(19001382-19001414)
[»] chr6 (10 HSPs)
chr6 (69-109)||(17379463-17379503)
chr6 (74-109)||(9519791-9519826)
chr6 (70-109)||(21687132-21687171)
chr6 (66-101)||(34395370-34395405)
chr6 (70-107)||(2588351-2588388)
chr6 (70-103)||(22564558-22564591)
chr6 (72-109)||(24469855-24469892)
chr6 (70-102)||(1636688-1636720)
chr6 (74-109)||(7543116-7543152)
chr6 (70-106)||(24320655-24320691)
[»] scaffold0032 (1 HSPs)
scaffold0032 (70-109)||(92831-92870)
[»] scaffold0014 (1 HSPs)
scaffold0014 (70-109)||(192177-192216)
[»] scaffold0113 (1 HSPs)
scaffold0113 (72-109)||(6693-6730)
[»] scaffold0043 (1 HSPs)
scaffold0043 (72-109)||(88439-88476)


Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 12 - 375
Target Start/End: Original strand, 27546384 - 27546750
Alignment:
Q  12 cataggcaatcattctattactcctctccattttgctgttattttctacgaaataaatactgaaaaacatgctaaaaataacgtaagatgacttgtcaaa 111  Q
    ||||| ||||||||||| ||||||||||||||||| |||||||| |||| ||| ||||||||||||| || |||| |||||  ||||||||| |||||||    
T  27546384 catagacaatcattctaatactcctctccattttgttgttatttcctactaaacaaatactgaaaaatatactaagaataatataagatgacctgtcaaa 27546483  T
Q  112 atatgagtcattcattgcaag--catcattcgcttaagggttggagcgtaggatatctgagtacgaatggactcccaatt-gatggtatcacaagtctga 208  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  27546484 atatgagtcattcattgcaagaccatcattcgcttaagggttggagcgtaggatatctgagtacgaatggactcccaatttgatggtatcacaagtctga 27546583  T
Q  209 gaagaggaccatgtcaaagaaccctttttgcaaagatacttggtcgtgtggtaaaagagaaggtcaacatcttcacttcaaacgaggttacccatgtcac 308  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27546584 gaagaggaccatgtcaaagaaccctttttgcaaagatacatggtcgtgtggtaaaagagaaggtcaacatcttcacttcaaacgaggttacccatgtcac 27546683  T
Q  309 aagggagaaaaacacaaggggtgatgttgtatctaagataacaaggtccataaacgcatgaatcaac 375  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  27546684 aagggagaaaaacacaaggggtgatgttctatctaagataacaaggtccataaacgcatgaatcaac 27546750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 16915293 - 16915198
Alignment:
Q  12 cataggcaatcattctattactcctctccattttgctgttattttctacgaaataaatactgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    ||||||||||| ||||| ||||||||  | ||||| |||||||  |||| ||| ||||||| ||||||||| ||| |||||||||||||||| |||||    
T  16915293 cataggcaatcgttctaatactcctc--ctttttgttgttattccctactaaaaaaatactaaaaaacatgttaagaataacgtaagatgacgtgtca 16915198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 22426612 - 22426518
Alignment:
Q  12 cataggcaatcattctattactcctctccattttgctgttattttctacgaaataaatactgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    ||||||||||| ||||| ||||||||  | |||||||| ||||| |||| |||  || ||||||||||||||||| ||| |||||||||||| |||||    
T  22426612 cataggcaatcgttctaatactcctc--ctttttgctgctatttcctactaaaataa-actgaaaaacatgctaagaatgacgtaagatgacctgtca 22426518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 102
Target Start/End: Complemental strand, 15571730 - 15571698
Alignment:
Q  70 actgaaaaacatgctaaaaataacgtaagatga 102  Q
    |||||||||||||||||||||||||||||||||    
T  15571730 actgaaaaacatgctaaaaataacgtaagatga 15571698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 109
Target Start/End: Complemental strand, 16817182 - 16817111
Alignment:
Q  37 ctccattttgctgttattttctacgaaataaatactgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    |||| |||||||| ||||| |||| |||  || ||||||||||||| ||| ||||||||||||||||||||||    
T  16817182 ctcctttttgctgctatttcctactaaaataa-actgaaaaacatgttaagaataacgtaagatgacttgtca 16817111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 70 - 109
Target Start/End: Complemental strand, 21663132 - 21663093
Alignment:
Q  70 actgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    ||||||||||||||||| |||||||||||||||| |||||    
T  21663132 actgaaaaacatgctaagaataacgtaagatgacctgtca 21663093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 70 - 109
Target Start/End: Original strand, 24464669 - 24464708
Alignment:
Q  70 actgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    ||||||||||||||||| |||||||||||||||| |||||    
T  24464669 actgaaaaacatgctaagaataacgtaagatgacatgtca 24464708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 107
Target Start/End: Original strand, 24901266 - 24901301
Alignment:
Q  72 tgaaaaacatgctaaaaataacgtaagatgacttgt 107  Q
    ||||||| ||||||||||||||||||||||||||||    
T  24901266 tgaaaaatatgctaaaaataacgtaagatgacttgt 24901301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 70 - 109
Target Start/End: Original strand, 26652629 - 26652668
Alignment:
Q  70 actgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    ||||||||||||||||||||||||||| |||||| |||||    
T  26652629 actgaaaaacatgctaaaaataacgtaggatgacatgtca 26652668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 70 - 109
Target Start/End: Original strand, 33192407 - 33192446
Alignment:
Q  70 actgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    ||||||||||||||||| |||| |||||||||||||||||    
T  33192407 actgaaaaacatgctaagaatagcgtaagatgacttgtca 33192446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 18734682 - 18734588
Alignment:
Q  12 cataggcaatcattctattactcctctccattttgctgttattttctacgaaataaatactgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    ||||||||||| ||||| ||||||||  | |||||||||||  | |||| |||  || ||||||||||||||||| ||||||||||||| || |||||    
T  18734682 cataggcaatcgttctaatactcctc--ctttttgctgttaaatcctactaaagtaa-actgaaaaacatgctaagaataacgtaagataacctgtca 18734588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 14782587 - 14782624
Alignment:
Q  72 tgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  14782587 tgaaaaacatgctaagaataacgtaagatgacctgtca 14782624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 107
Target Start/End: Complemental strand, 14968466 - 14968429
Alignment:
Q  70 actgaaaaacatgctaaaaataacgtaagatgacttgt 107  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  14968466 actgaaaaacatgctgaaaataacgtaagatggcttgt 14968429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 18527536 - 18527499
Alignment:
Q  72 tgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    ||||||| ||||||| ||||||||||||||||||||||    
T  18527536 tgaaaaagatgctaagaataacgtaagatgacttgtca 18527499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 103
Target Start/End: Complemental strand, 21536948 - 21536915
Alignment:
Q  70 actgaaaaacatgctaaaaataacgtaagatgac 103  Q
    ||||||||| ||||||||||||||||||||||||    
T  21536948 actgaaaaatatgctaaaaataacgtaagatgac 21536915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 26611371 - 26611334
Alignment:
Q  72 tgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  26611371 tgaaaaacatgctaagaataacgtaagatgacctgtca 26611334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 15526849 - 15526809
Alignment:
Q  69 tactgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    |||||||||||||| ||| |||||||||||||||| |||||    
T  15526849 tactgaaaaacatgataagaataacgtaagatgacatgtca 15526809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 102
Target Start/End: Original strand, 16363678 - 16363710
Alignment:
Q  70 actgaaaaacatgctaaaaataacgtaagatga 102  Q
    |||| ||||||||||||||||||||||||||||    
T  16363678 actggaaaacatgctaaaaataacgtaagatga 16363710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 26022439 - 26022479
Alignment:
Q  69 tactgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    |||||||||||||||||| ||||||||||||| || |||||    
T  26022439 tactgaaaaacatgctaagaataacgtaagatcacctgtca 26022479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 37 - 109
Target Start/End: Complemental strand, 27412733 - 27412661
Alignment:
Q  37 ctccattttgctgttattttctacgaaataaatactgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    ||||||||| ||| ||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  27412733 ctccatttttctgctatttcctacaaaaaaaatactgaaaaacatgctaaaaataacgtaagatgacttgtca 27412661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 70 - 109
Target Start/End: Original strand, 18535825 - 18535864
Alignment:
Q  70 actgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  18535825 actgaaaaacatgctaagaataacgtaagatgacttgtca 18535864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 103
Target Start/End: Original strand, 27073975 - 27074040
Alignment:
Q  37 ctccattttgctgttattttctacgaaataaatactgaaaaacatgctaaaaataacgtaagatgac 103  Q
    ||||||||||||| ||||| |||  |||  || ||||||||||||||||||||||||||||||||||    
T  27073975 ctccattttgctgctatttcctattaaaataa-actgaaaaacatgctaaaaataacgtaagatgac 27074040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 19913867 - 19913788
Alignment:
Q  15 aggcaatcattctattactcctctccattttgctgttattttctacgaaataaatactgaaaaacatgctaaaaataacgtaa 97  Q
    |||||||||||||| |||| |||  ||||||| ||| ||||||||| |||  || ||||||||||||||||| ||||||||||    
T  19913867 aggcaatcattctaatactactc--cattttgttgtcattttctactaaaataa-actgaaaaacatgctaagaataacgtaa 19913788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 70 - 109
Target Start/End: Complemental strand, 22470444 - 22470405
Alignment:
Q  70 actgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    ||||||||||||||||| |||||||||||||||| |||||    
T  22470444 actgaaaaacatgctaagaataacgtaagatgacatgtca 22470405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 103
Target Start/End: Complemental strand, 819888 - 819855
Alignment:
Q  70 actgaaaaacatgctaaaaataacgtaagatgac 103  Q
    ||||||||||||||||| ||||||||||||||||    
T  819888 actgaaaaacatgctaagaataacgtaagatgac 819855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 7805799 - 7805836
Alignment:
Q  72 tgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  7805799 tgaaaaacatgctaagaataacgtaagatgacctgtca 7805836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 103
Target Start/End: Complemental strand, 12771244 - 12771211
Alignment:
Q  70 actgaaaaacatgctaaaaataacgtaagatgac 103  Q
    ||||||||||||||||| ||||||||||||||||    
T  12771244 actgaaaaacatgctaagaataacgtaagatgac 12771211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 20886925 - 20886962
Alignment:
Q  72 tgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  20886925 tgaaaaacatgctaagaataacgtaagatgacctgtca 20886962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 21380215 - 21380178
Alignment:
Q  72 tgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    ||||||| ||||| ||||||||||||||||||||||||    
T  21380215 tgaaaaatatgcttaaaataacgtaagatgacttgtca 21380178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 109
Target Start/End: Complemental strand, 20021891 - 20021820
Alignment:
Q  37 ctccattttgctgttattttctacgaaataaatactgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    ||||||||||||| |||||  ||| |||  || ||||||||||||||||| | |||||||||||||| |||||    
T  20021891 ctccattttgctgctatttcatactaaaataa-actgaaaaacatgctaagagtaacgtaagatgacatgtca 20021820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 26829563 - 26829469
Alignment:
Q  12 cataggcaatcattctattactcctctccattttgctgttattttctacgaaataaatactgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    ||||||||||| ||||||||||||||  ||||||| || ||||| |||| ||| ||||||||||||||||||||| |||||||||||||||| |||||    
T  26829563 cataggcaatcgttctattactcctc--cattttgttgctatttcctactaaa-aaatactgaaaaacatgctaagaataacgtaagatgacgtgtca 26829469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 109
Target Start/End: Original strand, 6886726 - 6886764
Alignment:
Q  71 ctgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  6886726 ctgaaaaacatgctaagaataacgtaagatgacttgtca 6886764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 5151973 - 5152013
Alignment:
Q  69 tactgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    |||||||||||||| ||| ||||||||||||||||||||||    
T  5151973 tactgaaaaacatgttaagaataacgtaagatgacttgtca 5152013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 28275367 - 28275327
Alignment:
Q  69 tactgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    |||||||||||||||||| ||||||||||||||| ||||||    
T  28275367 tactgaaaaacatgctaagaataacgtaagatgatttgtca 28275327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 70 - 109
Target Start/End: Original strand, 17650016 - 17650055
Alignment:
Q  70 actgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  17650016 actgaaaaacatgttaagaataacgtaagatgacttgtca 17650055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 70 - 109
Target Start/End: Original strand, 19265877 - 19265916
Alignment:
Q  70 actgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    ||||||||||||||||| |||||||||||||||| |||||    
T  19265877 actgaaaaacatgctaagaataacgtaagatgacctgtca 19265916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 70 - 109
Target Start/End: Complemental strand, 21695455 - 21695416
Alignment:
Q  70 actgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    ||||||||||||||||| |||||||||||||||| |||||    
T  21695455 actgaaaaacatgctaagaataacgtaagatgacatgtca 21695416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 103
Target Start/End: Original strand, 26139788 - 26139876
Alignment:
Q  12 cataggcaatcattctattactcctctccattttgctgttattttctacgaaa-taaatactgaaaaacatgctaaaaataacgtaagatgac 103  Q
    ||||||||||| ||||| ||||||||  | ||||| || ||||| |||| ||| |||||  ||||||||||||||| ||||||||||||||||    
T  26139788 cataggcaatcgttctaatactcctc--ctttttgatgctatttcctactaaaataaat--tgaaaaacatgctaagaataacgtaagatgac 26139876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 14271898 - 14271935
Alignment:
Q  72 tgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  14271898 tgaaaaacatgctaagaataacgtaagatgacctgtca 14271935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 103
Target Start/End: Original strand, 17976290 - 17976319
Alignment:
Q  74 aaaaacatgctaaaaataacgtaagatgac 103  Q
    ||||||||||||||||||||||||||||||    
T  17976290 aaaaacatgctaaaaataacgtaagatgac 17976319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 103
Target Start/End: Complemental strand, 18446901 - 18446868
Alignment:
Q  70 actgaaaaacatgctaaaaataacgtaagatgac 103  Q
    ||||||||||||| ||||||||||||||||||||    
T  18446901 actgaaaaacatggtaaaaataacgtaagatgac 18446868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 21316840 - 21316877
Alignment:
Q  72 tgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  21316840 tgaaaaacatgctaagaataacgtaagatgacctgtca 21316877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 30117698 - 30117661
Alignment:
Q  72 tgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    ||||||||||||||||||||||||||||| || |||||    
T  30117698 tgaaaaacatgctaaaaataacgtaagataacctgtca 30117661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 20349 - 20255
Alignment:
Q  12 cataggcaatcattctattactcctctccattttgctgttattttctacgaaataaatactgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    ||||||||||| ||||| ||||||||  | |||||||| ||||| |||| ||||||| | ||||||||||||||| ||||||||||||||||||||||    
T  20349 cataggcaatcgttctaatactcctc--ctttttgctgctatttcctactaaataaa-attgaaaaacatgctaagaataacgtaagatgacttgtca 20255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 18120642 - 18120548
Alignment:
Q  12 cataggcaatcattctattactcctctccattttgctgttattttctacgaaataaatactgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    ||||||||||| ||||| ||||||||  |||||||||| ||||| |||| |||  || ||||||||||||||||| |||||||||||||||| |||||    
T  18120642 cataggcaatcgttctaatactcctc--cattttgctgctatttcctactaaaataa-actgaaaaacatgctaagaataacgtaagatgacatgtca 18120548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 25532236 - 25532327
Alignment:
Q  12 cataggcaatcattctattactcctctccattttgctgttattttctacgaaataaatactgaaaaacatgctaaaaataacgtaagatgacttg 106  Q
    ||||||||||| ||||| ||||||||  | |||||||| ||||| |||| |||  || ||||||||||||||||| |||||||||| ||||||||    
T  25532236 cataggcaatcgttctaatactcctc--ctttttgctgctatttcctactaaaataa-actgaaaaacatgctaagaataacgtaaaatgacttg 25532327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 109
Target Start/End: Original strand, 25537556 - 25537650
Alignment:
Q  12 cataggcaatcattctattactcctctccattttgctgttattttctacgaaataaatactgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    |||||||||||  |||| ||||||||  | |||| ||||||||| |||| |||  || ||||||||||||||||| |||||||||||||||| |||||    
T  25537556 cataggcaatcgctctaatactcctc--ctttttactgttatttcctactaaaataa-actgaaaaacatgctaagaataacgtaagatgacctgtca 25537650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 70 - 107
Target Start/End: Complemental strand, 23010085 - 23010048
Alignment:
Q  70 actgaaaaacatgctaaaaataacgtaagatgacttgt 107  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  23010085 actgaaaaacatgctaagaataacgtaagatgacttgt 23010048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 70 - 101
Target Start/End: Complemental strand, 25882612 - 25882581
Alignment:
Q  70 actgaaaaacatgctaaaaataacgtaagatg 101  Q
    ||||||||||||||||||||||||||||||||    
T  25882612 actgaaaaacatgctaaaaataacgtaagatg 25882581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 25922662 - 25922699
Alignment:
Q  72 tgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    ||||||||||||||||||||||||||||| || |||||    
T  25922662 tgaaaaacatgctaaaaataacgtaagataacctgtca 25922699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 109
Target Start/End: Complemental strand, 25886230 - 25886194
Alignment:
Q  73 gaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    |||||||||| |||||||||||||||||||| |||||    
T  25886230 gaaaaacatgataaaaataacgtaagatgacctgtca 25886194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 70 - 109
Target Start/End: Complemental strand, 4914 - 4875
Alignment:
Q  70 actgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  4914 actgaaaaacatgctaagaataacgtaagatgacttgtca 4875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 103
Target Start/End: Complemental strand, 16522000 - 16521907
Alignment:
Q  12 cataggcaatcattctattactcctctccattttgctgttattttctacgaaa----taaatactgaaaaacatgctaaaaataacgtaagatgac 103  Q
    ||||||||||| ||||| ||||||||  |||||||||| ||||| |||| |||    ||||||| ||||||| |||||| ||||||||||||||||    
T  16522000 cataggcaatcgttctaatactcctc--cattttgctgctatttcctactaaaaaattaaataccgaaaaacttgctaagaataacgtaagatgac 16521907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 70 - 109
Target Start/End: Original strand, 29988012 - 29988051
Alignment:
Q  70 actgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  29988012 actgaaaaacatgctaaaaataacgtaagatgacctgtca 29988051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 66 - 109
Target Start/End: Original strand, 17831744 - 17831787
Alignment:
Q  66 aaatactgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    |||| |||||||||||||||| |||||||||||||||| |||||    
T  17831744 aaatgctgaaaaacatgctaagaataacgtaagatgacatgtca 17831787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 20548547 - 20548456
Alignment:
Q  15 aggcaatcattctattactcctctccattttgctgttattttctacgaaataaatactgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    |||||||| ||||| ||||||||  ||||||| || ||||| |||| |||  || ||||||||||||||||  |||||||||||||||| |||||    
T  20548547 aggcaatcgttctaatactcctc--cattttgttgctatttcctactaaaataa-actgaaaaacatgctaggaataacgtaagatgacctgtca 20548456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 70 - 109
Target Start/End: Complemental strand, 23214867 - 23214828
Alignment:
Q  70 actgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    ||||||||||||||||| |||||||||||||||| |||||    
T  23214867 actgaaaaacatgctaagaataacgtaagatgacctgtca 23214828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 70 - 109
Target Start/End: Complemental strand, 25572520 - 25572481
Alignment:
Q  70 actgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    ||||||||||||||||| ||||||||| ||||||||||||    
T  25572520 actgaaaaacatgctaagaataacgtaggatgacttgtca 25572481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 103
Target Start/End: Complemental strand, 24513239 - 24513205
Alignment:
Q  69 tactgaaaaacatgctaaaaataacgtaagatgac 103  Q
    |||||||||||||||||| ||||||||||||||||    
T  24513239 tactgaaaaacatgctaagaataacgtaagatgac 24513205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 103
Target Start/End: Original strand, 18832277 - 18832310
Alignment:
Q  70 actgaaaaacatgctaaaaataacgtaagatgac 103  Q
    ||||||||||||||||||||||| ||||||||||    
T  18832277 actgaaaaacatgctaaaaataatgtaagatgac 18832310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 103
Target Start/End: Complemental strand, 24263792 - 24263759
Alignment:
Q  70 actgaaaaacatgctaaaaataacgtaagatgac 103  Q
    ||||||||||||||||| ||||||||||||||||    
T  24263792 actgaaaaacatgctaagaataacgtaagatgac 24263759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 103
Target Start/End: Original strand, 34488912 - 34488945
Alignment:
Q  70 actgaaaaacatgctaaaaataacgtaagatgac 103  Q
    ||||||||||||||||| ||||||||||||||||    
T  34488912 actgaaaaacatgctaagaataacgtaagatgac 34488945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 70 - 109
Target Start/End: Complemental strand, 11252171 - 11252132
Alignment:
Q  70 actgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  11252171 actgaaaaacatgctaaaaataacgtaagatgacctgtca 11252132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 69 - 102
Target Start/End: Complemental strand, 23970714 - 23970681
Alignment:
Q  69 tactgaaaaacatgctaaaaataacgtaagatga 102  Q
    ||||||||||||||||||||||||||||||||||    
T  23970714 tactgaaaaacatgctaaaaataacgtaagatga 23970681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 70 - 109
Target Start/End: Complemental strand, 8928355 - 8928316
Alignment:
Q  70 actgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    ||||||||| |||||||||||||||||||||||| |||||    
T  8928355 actgaaaaatatgctaaaaataacgtaagatgacatgtca 8928316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 70 - 109
Target Start/End: Complemental strand, 8968113 - 8968074
Alignment:
Q  70 actgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    ||||||||||||||||| |||||||||||||||| |||||    
T  8968113 actgaaaaacatgctaagaataacgtaagatgacatgtca 8968074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 70 - 109
Target Start/End: Original strand, 17277900 - 17277939
Alignment:
Q  70 actgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    ||||||||||||||||| |||||||||||||||| |||||    
T  17277900 actgaaaaacatgctaagaataacgtaagatgacatgtca 17277939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 109
Target Start/End: Original strand, 17434493 - 17434528
Alignment:
Q  74 aaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    |||||||||||||||||||||||||||||| |||||    
T  17434493 aaaaacatgctaaaaataacgtaagatgacctgtca 17434528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 70 - 109
Target Start/End: Original strand, 25025161 - 25025200
Alignment:
Q  70 actgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    ||||||||||||||||| |||||||||||||||| |||||    
T  25025161 actgaaaaacatgctaagaataacgtaagatgacctgtca 25025200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 100
Target Start/End: Complemental strand, 9263392 - 9263362
Alignment:
Q  70 actgaaaaacatgctaaaaataacgtaagat 100  Q
    |||||||||||||||||||||||||||||||    
T  9263392 actgaaaaacatgctaaaaataacgtaagat 9263362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 13588765 - 13588802
Alignment:
Q  72 tgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    ||||||||||||||| ||||||||||||||| ||||||    
T  13588765 tgaaaaacatgctaataataacgtaagatgatttgtca 13588802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 103
Target Start/End: Original strand, 17218583 - 17218616
Alignment:
Q  70 actgaaaaacatgctaaaaataacgtaagatgac 103  Q
    ||||||||||||||||| ||||||||||||||||    
T  17218583 actgaaaaacatgctaagaataacgtaagatgac 17218616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 102
Target Start/End: Complemental strand, 12836112 - 12836080
Alignment:
Q  70 actgaaaaacatgctaaaaataacgtaagatga 102  Q
    ||||||||||||||||| |||||||||||||||    
T  12836112 actgaaaaacatgctaagaataacgtaagatga 12836080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 13287807 - 13287713
Alignment:
Q  12 cataggcaatcattctattactcctctccattttgctgttattttctacgaaataaatactgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    ||||||||||| ||||| ||||| ||  | ||||| |||||||| |||| |||  || ||||||||||||| ||| ||||||||||||||||||||||    
T  13287807 cataggcaatcgttctaatactcatc--ctttttgatgttatttcctactaaaataa-actgaaaaacatgttaagaataacgtaagatgacttgtca 13287713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 70 - 109
Target Start/End: Complemental strand, 1254737 - 1254699
Alignment:
Q  70 actgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  1254737 actgaaaaacatgctaaaa-taacgtaagatgacttgtca 1254699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 70 - 109
Target Start/End: Original strand, 2565961 - 2566000
Alignment:
Q  70 actgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    ||||||||||||||||| |||| |||||||||||||||||    
T  2565961 actgaaaaacatgctaagaatatcgtaagatgacttgtca 2566000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 70 - 109
Target Start/End: Original strand, 2927929 - 2927968
Alignment:
Q  70 actgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    ||||||||||||||||| |||||||||||||||| |||||    
T  2927929 actgaaaaacatgctaagaataacgtaagatgacctgtca 2927968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 109
Target Start/End: Original strand, 4994786 - 4994821
Alignment:
Q  74 aaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    |||||||||||||||||||||||||||||| |||||    
T  4994786 aaaaacatgctaaaaataacgtaagatgacctgtca 4994821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 70 - 109
Target Start/End: Original strand, 10332459 - 10332498
Alignment:
Q  70 actgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    ||||||||||||||||| |||||||||||||||| |||||    
T  10332459 actgaaaaacatgctaagaataacgtaagatgacatgtca 10332498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 70 - 109
Target Start/End: Complemental strand, 23173727 - 23173688
Alignment:
Q  70 actgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    ||||||||||||||||| |||||||||||||||| |||||    
T  23173727 actgaaaaacatgctaagaataacgtaagatgacatgtca 23173688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 109
Target Start/End: Original strand, 19154874 - 19154912
Alignment:
Q  71 ctgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  19154874 ctgaaaaacatgctaagaataacgtaagatgacctgtca 19154912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 109
Target Start/End: Original strand, 20754273 - 20754311
Alignment:
Q  71 ctgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  20754273 ctgaaaaacatgctaagaataacgtaagatgacctgtca 20754311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 3585562 - 3585525
Alignment:
Q  72 tgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    ||||||||||||||| ||||| ||||||||||||||||    
T  3585562 tgaaaaacatgctaagaataatgtaagatgacttgtca 3585525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 103
Target Start/End: Complemental strand, 5236908 - 5236875
Alignment:
Q  70 actgaaaaacatgctaaaaataacgtaagatgac 103  Q
    ||||||||||||||||| ||||||||||||||||    
T  5236908 actgaaaaacatgctaagaataacgtaagatgac 5236875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 103
Target Start/End: Original strand, 6018413 - 6018446
Alignment:
Q  70 actgaaaaacatgctaaaaataacgtaagatgac 103  Q
    |||||||||||||||||||||||| |||||||||    
T  6018413 actgaaaaacatgctaaaaataacataagatgac 6018446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 9722498 - 9722535
Alignment:
Q  72 tgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    ||||||||||||||| ||||||||||||||| ||||||    
T  9722498 tgaaaaacatgctaataataacgtaagatgatttgtca 9722535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 103
Target Start/End: Complemental strand, 13252749 - 13252716
Alignment:
Q  70 actgaaaaacatgctaaaaataacgtaagatgac 103  Q
    ||||||||||||||||| ||||||||||||||||    
T  13252749 actgaaaaacatgctaagaataacgtaagatgac 13252716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 13280816 - 13280853
Alignment:
Q  72 tgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  13280816 tgaaaaacatgctaagaataacgtaagatgacatgtca 13280853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 102
Target Start/End: Complemental strand, 19201365 - 19201332
Alignment:
Q  69 tactgaaaaacatgctaaaaataacgtaagatga 102  Q
    |||||||||||||||||| |||||||||||||||    
T  19201365 tactgaaaaacatgctaagaataacgtaagatga 19201332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 2506863 - 2506823
Alignment:
Q  69 tactgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    |||||||||||||||| | |||||||||||||||| |||||    
T  2506863 tactgaaaaacatgctgagaataacgtaagatgacctgtca 2506823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 102
Target Start/End: Complemental strand, 18986786 - 18986754
Alignment:
Q  70 actgaaaaacatgctaaaaataacgtaagatga 102  Q
    ||||||||||||||||| |||||||||||||||    
T  18986786 actgaaaaacatgctaagaataacgtaagatga 18986754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 102
Target Start/End: Complemental strand, 19001414 - 19001382
Alignment:
Q  70 actgaaaaacatgctaaaaataacgtaagatga 102  Q
    ||||||||||||||||| |||||||||||||||    
T  19001414 actgaaaaacatgctaagaataacgtaagatga 19001382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 17379503 - 17379463
Alignment:
Q  69 tactgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    |||||||||||||||||| ||||||||||||||| ||||||    
T  17379503 tactgaaaaacatgctaagaataacgtaagatgaattgtca 17379463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 109
Target Start/End: Original strand, 9519791 - 9519826
Alignment:
Q  74 aaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    ||||||||||||||||||||||||||||| ||||||    
T  9519791 aaaaacatgctaaaaataacgtaagatgaattgtca 9519826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 70 - 109
Target Start/End: Complemental strand, 21687171 - 21687132
Alignment:
Q  70 actgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    ||||||||||||||||| |||||||||||||||| |||||    
T  21687171 actgaaaaacatgctaagaataacgtaagatgacatgtca 21687132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 66 - 101
Target Start/End: Complemental strand, 34395405 - 34395370
Alignment:
Q  66 aaatactgaaaaacatgctaaaaataacgtaagatg 101  Q
    ||||||||||||||||||||||||||| ||||||||    
T  34395405 aaatactgaaaaacatgctaaaaataatgtaagatg 34395370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 107
Target Start/End: Original strand, 2588351 - 2588388
Alignment:
Q  70 actgaaaaacatgctaaaaataacgtaagatgacttgt 107  Q
    ||||||||| |||||||||| |||||||||||||||||    
T  2588351 actgaaaaatatgctaaaaacaacgtaagatgacttgt 2588388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 103
Target Start/End: Complemental strand, 22564591 - 22564558
Alignment:
Q  70 actgaaaaacatgctaaaaataacgtaagatgac 103  Q
    ||||||||||||||||| ||||||||||||||||    
T  22564591 actgaaaaacatgctaagaataacgtaagatgac 22564558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 24469855 - 24469892
Alignment:
Q  72 tgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  24469855 tgaaaaacatactaaaaataacgtaagatgacctgtca 24469892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 102
Target Start/End: Original strand, 1636688 - 1636720
Alignment:
Q  70 actgaaaaacatgctaaaaataacgtaagatga 102  Q
    ||||||||||||||||| |||||||||||||||    
T  1636688 actgaaaaacatgctaagaataacgtaagatga 1636720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 109
Target Start/End: Original strand, 7543116 - 7543152
Alignment:
Q  74 aaaaacatgctaa-aaataacgtaagatgacttgtca 109  Q
    ||||||||||||| |||||||||||||||||||||||    
T  7543116 aaaaacatgctaagaaataacgtaagatgacttgtca 7543152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 106
Target Start/End: Original strand, 24320655 - 24320691
Alignment:
Q  70 actgaaaaacatgctaaaaataacgtaagatgacttg 106  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  24320655 actgaaaaatatgctaaaaataacgtaaaatgacttg 24320691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 70 - 109
Target Start/End: Complemental strand, 92870 - 92831
Alignment:
Q  70 actgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    ||||||||||||||||| ||||||||||||| ||||||||    
T  92870 actgaaaaacatgctaagaataacgtaagataacttgtca 92831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 70 - 109
Target Start/End: Original strand, 192177 - 192216
Alignment:
Q  70 actgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    |||||||| ||||||||||||||||||||||||| |||||    
T  192177 actgaaaaccatgctaaaaataacgtaagatgacctgtca 192216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 6693 - 6730
Alignment:
Q  72 tgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    ||||||||||||||||||||| ||| ||||||||||||    
T  6693 tgaaaaacatgctaaaaataatgtaggatgacttgtca 6730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 88476 - 88439
Alignment:
Q  72 tgaaaaacatgctaaaaataacgtaagatgacttgtca 109  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  88476 tgaaaaacatgctaagaataacgtaagatgacatgtca 88439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University