View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18031_high_9 (Length: 275)
Name: NF18031_high_9
Description: NF18031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18031_high_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 46669889 - 46670142
Alignment:
| Q |
1 |
aaatcaataacaccagaaccaaacaaaagattttcagaccgaaccggactaccccaaccatcagcagaccaaaaccaatgagcaacaattggataaacta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46669889 |
aaatcaataacaccagaaccaaacaaaagattttcagaccgaaccggactaccccaaccatcagcagaccaaaaccaatgagcaacaattggataaacta |
46669988 |
T |
|
| Q |
101 |
aaccggttaaaaacaacgaataaatcaaataagaaacgaactgtgttctctcagcaattgatccacttgtgatccctgctgcggcaatggcaaaagccca |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
46669989 |
aaccggttaaaaacgacgaataaatcaaataagaaacgaactgtgttctctcagcaattgatccacttgtgatccctgctgcagcaatggcaaaagccca |
46670088 |
T |
|
| Q |
201 |
ttgaaaaaggaaaaaaccgtaatcaaaagattgtgaagggaaatcagtaagacc |
254 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46670089 |
ttgaaagaggaaaaaaccgtaatcaaaagattgtgaagggaaatcagtaagacc |
46670142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 39641692 - 39641945
Alignment:
| Q |
1 |
aaatcaataacaccagaaccaaacaaaagattttcagaccgaaccggactaccccaaccatcagcagaccaaaaccaatgagcaacaattggataaacta |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
39641692 |
aaatcaataacaccggaaccaaacaaaagattttcagaccgaaccggactaccccaaccatcagcagaccaaaaccaatgagcaacaatcggataaacta |
39641791 |
T |
|
| Q |
101 |
aaccggttaaaaacaacgaataaatcaaataagaaacgaactgtgttctctcagcaattgatccacttgtgatccctgctgcggcaatggcaaaagccca |
200 |
Q |
| |
|
|||| |||| ||| |||||||||||||||||||||| || |||||||||||||||||||| ||||| ||||| ||||||| ||||| ||||||||||| |
|
|
| T |
39641792 |
aacctgttagaaaagacgaataaatcaaataagaaacaaattgtgttctctcagcaattgaaccactagtgattcctgctgaagcaattgcaaaagccca |
39641891 |
T |
|
| Q |
201 |
ttgaaaaaggaaaaaaccgtaatcaaaagattgtgaagggaaatcagtaagacc |
254 |
Q |
| |
|
|||| | || ||| | || ||||||||||| || ||||| |||||| ||||||| |
|
|
| T |
39641892 |
ttgatatagaaaatatccataatcaaaagactgagaaggaaaatcactaagacc |
39641945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 110
Target Start/End: Original strand, 35416015 - 35416072
Alignment:
| Q |
53 |
cccaaccatcagcagaccaaaaccaatgagcaacaattggataaactaaaccggttaa |
110 |
Q |
| |
|
||||||||||||| ||||||| |||||| | ||| || |||||||| ||||||||||| |
|
|
| T |
35416015 |
cccaaccatcagcggaccaaacccaatgcgaaacgatgggataaacaaaaccggttaa |
35416072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University