View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18031_low_11 (Length: 268)

Name: NF18031_low_11
Description: NF18031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18031_low_11
NF18031_low_11
[»] scaffold0186 (1 HSPs)
scaffold0186 (118-248)||(25038-25168)
[»] scaffold0217 (3 HSPs)
scaffold0217 (1-76)||(20330-20405)
scaffold0217 (42-76)||(853-887)
scaffold0217 (1-37)||(19540-19576)
[»] chr7 (18 HSPs)
chr7 (1-76)||(595320-595395)
chr7 (1-76)||(1600488-1600563)
chr7 (2-76)||(33980620-33980694)
chr7 (7-76)||(1599658-1599727)
chr7 (1-76)||(33981446-33981521)
chr7 (1-76)||(38226277-38226352)
chr7 (1-76)||(47254501-47254576)
chr7 (2-76)||(585047-585121)
chr7 (1-75)||(38229529-38229603)
chr7 (1-76)||(46159695-46159770)
chr7 (6-76)||(43543238-43543308)
chr7 (1-75)||(41407918-41407992)
chr7 (13-76)||(42832038-42832101)
chr7 (19-76)||(47253693-47253750)
chr7 (16-76)||(41407826-41407886)
chr7 (20-76)||(43544077-43544133)
chr7 (1-73)||(19064165-19064237)
chr7 (1-40)||(42832873-42832912)
[»] chr5 (15 HSPs)
chr5 (1-76)||(15525202-15525277)
chr5 (1-76)||(8525547-8525622)
chr5 (1-76)||(34858520-34858595)
chr5 (1-76)||(3034869-3034944)
chr5 (1-76)||(5100479-5100554)
chr5 (1-76)||(5101241-5101316)
chr5 (1-75)||(29640209-29640282)
chr5 (2-76)||(37250420-37250494)
chr5 (1-74)||(29639576-29639649)
chr5 (1-76)||(8524726-8524801)
chr5 (7-76)||(15526041-15526108)
chr5 (16-76)||(34859376-34859436)
chr5 (6-75)||(29390729-29390798)
chr5 (16-75)||(3035679-3035738)
chr5 (32-76)||(37252535-37252579)
[»] chr2 (12 HSPs)
chr2 (1-76)||(6321195-6321270)
chr2 (1-76)||(14453959-14454034)
chr2 (1-76)||(39160096-39160171)
chr2 (1-76)||(39209023-39209098)
chr2 (1-76)||(18247555-18247630)
chr2 (1-76)||(33180635-33180710)
chr2 (1-76)||(36601859-36601934)
chr2 (1-76)||(6320372-6320447)
chr2 (1-76)||(33179802-33179877)
chr2 (1-76)||(18248405-18248480)
chr2 (1-76)||(14453133-14453208)
chr2 (1-73)||(21191591-21191663)
[»] scaffold0014 (2 HSPs)
scaffold0014 (1-76)||(69730-69805)
scaffold0014 (1-75)||(70668-70742)
[»] chr8 (11 HSPs)
chr8 (1-76)||(35021148-35021223)
chr8 (1-76)||(38363562-38363637)
chr8 (1-76)||(41670449-41670524)
chr8 (1-76)||(31640357-31640432)
chr8 (1-76)||(38362735-38362810)
chr8 (1-74)||(26951052-26951125)
chr8 (1-76)||(19142054-19142129)
chr8 (2-76)||(26920335-26920409)
chr8 (1-75)||(41671235-41671309)
chr8 (1-76)||(35021975-35022050)
chr8 (1-52)||(26950253-26950304)
[»] chr6 (7 HSPs)
chr6 (1-76)||(13868187-13868262)
chr6 (7-73)||(13868996-13869062)
chr6 (1-76)||(24160179-24160254)
chr6 (5-76)||(15509073-15509144)
chr6 (1-40)||(12503662-12503701)
chr6 (16-74)||(32560773-32560831)
chr6 (5-76)||(32561585-32561649)
[»] chr4 (18 HSPs)
chr4 (1-76)||(10657019-10657094)
chr4 (1-76)||(10871164-10871239)
chr4 (1-76)||(43939271-43939346)
chr4 (1-76)||(43938443-43938518)
chr4 (5-76)||(50791616-50791687)
chr4 (1-76)||(51942616-51942691)
chr4 (1-75)||(49647713-49647787)
chr4 (1-74)||(8079616-8079689)
chr4 (1-74)||(10657846-10657919)
chr4 (1-74)||(10871991-10872064)
chr4 (1-73)||(49646901-49646973)
chr4 (1-76)||(8080950-8081025)
chr4 (1-76)||(26919187-26919262)
chr4 (1-76)||(31623417-31623492)
chr4 (2-76)||(30112907-30112981)
chr4 (1-76)||(51943437-51943511)
chr4 (1-71)||(26918378-26918448)
chr4 (16-76)||(7111796-7111856)
[»] chr3 (19 HSPs)
chr3 (1-76)||(39130892-39130967)
chr3 (1-76)||(43861550-43861625)
chr3 (1-76)||(50937428-50937503)
chr3 (1-76)||(42878652-42878727)
chr3 (1-76)||(48073694-48073769)
chr3 (6-76)||(42879479-42879549)
chr3 (1-76)||(43358499-43358575)
chr3 (1-76)||(2228395-2228470)
chr3 (1-76)||(22979695-22979770)
chr3 (1-76)||(39131711-39131786)
chr3 (1-76)||(48072883-48072958)
chr3 (1-76)||(50936604-50936679)
chr3 (2-76)||(36465877-36465950)
chr3 (4-70)||(42165031-42165097)
chr3 (1-76)||(22978868-22978943)
chr3 (1-76)||(7042571-7042643)
chr3 (5-74)||(43862354-43862423)
chr3 (1-76)||(42164205-42164280)
chr3 (1-76)||(36471572-36471642)
[»] chr1 (3 HSPs)
chr1 (1-76)||(23260110-23260185)
chr1 (1-73)||(4639228-4639300)
chr1 (1-75)||(23260797-23260869)


Alignment Details
Target: scaffold0186 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 118 - 248
Target Start/End: Original strand, 25038 - 25168
Alignment:
Q  118 ttttgctctttattttctccaaataccttacaactcacatctcctaattggaaagtttgttgaaactctagctgaaattgaatttcaagcaccaattatc 217  Q
    |||| ||||||||||||||||||||| ||||||||| ||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  25038 ttttactctttattttctccaaatacgttacaactcccatctcctagttggacagcttgttgaaactctagctgaaattgaatttcaagcaccaattatc 25137  T
Q  218 aaggagatttcaccttattttacgagccttt 248  Q
    |||||||||||||| ||||||||||||||||    
T  25138 aaggagatttcaccatattttacgagccttt 25168  T

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Target: scaffold0217 (Bit Score: 72; Significance: 8e-33; HSPs: 3)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 20330 - 20405
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  20330 gatgggaagaagaatgaagaagaaattgcacgttatgtgtgttctaggttttggaatggaacaaaatttatgaacg 20405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 42 - 76
Target Start/End: Original strand, 853 - 887
Alignment:
Q  42 ttctaggttttggaatggaacaaaatttatgaacg 76  Q
    |||||||||||||||||||||||||||||||||||    
T  853 ttctaggttttggaatggaacaaaatttatgaacg 887  T

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Target: scaffold0217; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 19576 - 19540
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatg 37  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  19576 gatgggaagaaaaatgaagaggaaattgcacgttatg 19540  T

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Target: chr7 (Bit Score: 72; Significance: 8e-33; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 595320 - 595395
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  595320 gatgggaagaagaatgaagaagaaattgcacgttatgtgtgttctaggttttggaatggaacaaaatttatgaacg 595395  T

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Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 1600488 - 1600563
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1600488 gatgggaataagaatgaagaagaaattgcacgttatgtgtgttctaggttttggaatggaacaaaatttatgaacg 1600563  T

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Target: chr7; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 2 - 76
Target Start/End: Complemental strand, 33980694 - 33980620
Alignment:
Q  2 atgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  33980694 atgggaagaagaatgaagaagaaattgcacgttatgtgagttctaggttttggaatggaacaaaatttatgaacg 33980620  T

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Target: chr7; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 1599727 - 1599658
Alignment:
Q  7 aagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1599727 aagaagaatgaagaagaaattgcacgttatgtgtgttctaggttttggaatggaacaaaatttatgaacg 1599658  T

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Target: chr7; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 33981446 - 33981521
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    ||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  33981446 gatggaaagaagaatgaagaagaaattacacgttatgtgtgttctaggttttggaatggaacaaaatttatgaacg 33981521  T

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Target: chr7; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 38226352 - 38226277
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    ||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  38226352 gatggaaagaagaatgaagaagaaattgcacgttatgcgtgttctaggttttggaatggaacaaaatttatgaacg 38226277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 47254501 - 47254576
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  47254501 gatgggaagaaaaatgaagaagaaattgcacgttatgtgtgttctaggttttggaatgtaacaaaatttatgaacg 47254576  T

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Target: chr7; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 76
Target Start/End: Original strand, 585047 - 585121
Alignment:
Q  2 atgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    ||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||    
T  585047 atgggaagaagaatgaagaagaaattgcatgttatgtatgttctaggttttggaatggaacaaaatttatgaacg 585121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 38229529 - 38229603
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaac 75  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||    
T  38229529 gatgggaagaagaatgaagaagaaattgcacgttatgtatgttctaggttttgcaatggaacaaaatttatgaac 38229603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 46159770 - 46159695
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    |||| ||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||    
T  46159770 gatgagaagaagaatgaagaagaaattgcacgttatgtgcgttctaggtttaggaatggaacaaaatttatgaacg 46159695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 6 - 76
Target Start/End: Complemental strand, 43543308 - 43543238
Alignment:
Q  6 gaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||    
T  43543308 gaagaagaatgaagaagaaattgcacgttatgtgtgtcctaggttttggaagggaacaaaatttatgaacg 43543238  T

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Target: chr7; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 41407918 - 41407992
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaac 75  Q
    |||||||||||||||||||||||||||||||||||  ||| |||||||||||  |||||||||||||||||||||    
T  41407918 gatgggaagaagaatgaagaagaaattgcacgttacatgtgttctaggttttttaatggaacaaaatttatgaac 41407992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 42832101 - 42832038
Alignment:
Q  13 aatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    |||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||    
T  42832101 aatgaagaagaaattgcacgttatgtgtgttctagattttagaatggaacaaaatttatgaacg 42832038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 47253750 - 47253693
Alignment:
Q  19 gaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  47253750 gaagaaattgcacgttatgtgtgttctaggttttggaatggaacaaattttatgaacg 47253693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 41407886 - 41407826
Alignment:
Q  16 gaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||    
T  41407886 gaagaagaaattgcacgttatgtgtgttctagattttggaatggaacaaaatctatgaacg 41407826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 43544077 - 43544133
Alignment:
Q  20 aagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  43544077 aagaaattgcacgttatgtgtgttataggttttggaatggaacaaaatttatgaacg 43544133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 19064237 - 19064165
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatga 73  Q
    ||||||||||||||||||||||||| |||| ||||||| | || |||||||||||||||||  ||||||||||    
T  19064237 gatgggaagaagaatgaagaagaaactgcaggttatgtctgttttaggttttggaatggaatcaaatttatga 19064165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 42832873 - 42832912
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgt 40  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  42832873 gatggggagaagaatgaagaagaaattgcacgttatgtgt 42832912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 8e-33; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 15525277 - 15525202
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  15525277 gatgggaagaagaatgaagaagaaattgcacgttatgtgtgttctaggttttggaatggaacaaaatttatgaacg 15525202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 8525547 - 8525622
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  8525547 gatgagaagaagaatgaagaagaaattgcacgttatgtgtactctaggttttggaatggaacaaaatttatgaacg 8525622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 34858595 - 34858520
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  34858595 gatgggaagaagaatgaagaagaaattgcacgttatgtgtgttctaggttttggaatgaaacaaaatttatgaacg 34858520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 3034944 - 3034869
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||    
T  3034944 gatgggaagaagaatgaagaagaaattgcacgttatgtgtgttttaggttttggaatggaataaaatttatgaacg 3034869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 5100554 - 5100479
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    ||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||    
T  5100554 gatgggaagaaaaatgaagaagaaattgcacattatgtgtgttctaggttttggaatgtaacaaaatttatgaacg 5100479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 5101241 - 5101316
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||| ||||||||||    
T  5101241 gatgggaagaagaatgaagaagaaattgcacattatgtgtgttctagattttggaatggaacaaattttatgaacg 5101316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 29640209 - 29640282
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaac 75  Q
    ||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  29640209 gatgggaagaataa-gaagaagaaattgcacgttatgtgtgttctaggttttggaatggaacaaaatttatgaac 29640282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 2 - 76
Target Start/End: Complemental strand, 37250494 - 37250420
Alignment:
Q  2 atgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    |||||||||| |||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  37250494 atgggaagaaaaatgaagaggaaattgcacgttatgcgtgttctaggttttggaatggaacaaaatttatgaacg 37250420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 29639649 - 29639576
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaa 74  Q
    |||||||||||||||||||||||||||||||||||  ||| |||||||||||||| ||||||||||||||||||    
T  29639649 gatgggaagaagaatgaagaagaaattgcacgttacatgtgttctaggttttggagtggaacaaaatttatgaa 29639576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 8524801 - 8524726
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    |||| ||||||||||||||||||||||||| |||||| || || |||||||||||||| |||||||||||||||||    
T  8524801 gatgagaagaagaatgaagaagaaattgcaagttatgcgtgttataggttttggaatgaaacaaaatttatgaacg 8524726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 15526041 - 15526108
Alignment:
Q  7 aagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    |||||||||||||||||||||||||||| | |||  ||||||||||||||||||||||||||||||||||    
T  15526041 aagaagaatgaagaagaaattgcacgttgtatgt--tctaggttttggaatggaacaaaatttatgaacg 15526108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 34859376 - 34859436
Alignment:
Q  16 gaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    ||||||||||||||||||||  ||| |||||||||||||||| ||||||||||||||||||    
T  34859376 gaagaagaaattgcacgttacatgtgttctaggttttggaatagaacaaaatttatgaacg 34859436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 29390729 - 29390798
Alignment:
Q  6 gaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaac 75  Q
    |||||||||||||||||||| | || ||||||| | ||||||||| |||| |||||||||||||||||||    
T  29390729 gaagaagaatgaagaagaaactacaggttatgtctgttctaggttatggactggaacaaaatttatgaac 29390798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 3035679 - 3035738
Alignment:
Q  16 gaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaac 75  Q
    |||||||||||||||| |||| ||| || ||||||||||||||||||||||| |||||||    
T  3035679 gaagaagaaattgcacattatatgtgttataggttttggaatggaacaaaatgtatgaac 3035738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 37252535 - 37252579
Alignment:
Q  32 gttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    ||||||||| |||||||||||| ||| ||||||||||||||||||    
T  37252535 gttatgtgtgttctaggttttgaaattgaacaaaatttatgaacg 37252579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 8e-33; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 6321195 - 6321270
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  6321195 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctatgttttggaatggaacaaaatttatgaacg 6321270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 14453959 - 14454034
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  14453959 gatgggaagaagaatgaagaagaaattgcacgttatgtgtgttctaggttttggaatggaacaaaatttatgaacg 14454034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 39160171 - 39160096
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  39160171 gatgggaagaagaatgaagaagaaattgtacgttatgtgtgttctaggttttggaatggaacaaaatttatgaacg 39160096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 39209023 - 39209098
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  39209023 gatgggaagaagaatgaagaagaaattgtacgttatgtgtgttctaggttttggaatggaacaaaatttatgaacg 39209098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 18247630 - 18247555
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    |||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  18247630 gatgggaagaagaatgaagatgaaattgcacgttatgtttgttctaggttttggaatggaacaaaatttatgaacg 18247555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 33180635 - 33180710
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||    
T  33180635 gatgggaagaagaatgaagaagaaattgcacgttatgtgtgttctagattttagaatggaacaaaatttatgaacg 33180710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 36601859 - 36601934
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||    
T  36601859 gatgggaagaagaatgaagaagaaattgcacgttatgtgtgttctaggttttgaaatagaacaaaatttatgaacg 36601934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 6320447 - 6320372
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    |||||||| ||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||    
T  6320447 gatgggaaaaagaatgaagaagaaattgcacgttatgtgtgttataggttttagaatggaacaaaatttatgaacg 6320372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 33179877 - 33179802
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||    
T  33179877 gatgggaagaagaatgaaaaagaaattgcacgttatgtgtgttctaggttttggaatggaaaaaattttatgaacg 33179802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 18248405 - 18248480
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    ||||||||||||||||||||||||||||| |||||| ||  ||||||||||||||||| |||||||||||||||||    
T  18248405 gatgggaagaagaatgaagaagaaattgcgcgttatttgcgttctaggttttggaatgaaacaaaatttatgaacg 18248480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 14453208 - 14453133
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    |||||||||||||||||||||||||||||||||||||| | |||||  ||||||||  ||||||||||||||||||    
T  14453208 gatgggaagaagaatgaagaagaaattgcacgttatgtatgttctatattttggaactgaacaaaatttatgaacg 14453133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 21191591 - 21191663
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatga 73  Q
    ||||||||||||||||||||||||| |||| ||||||| | || |||||||||||||||||| ||||||||||    
T  21191591 gatgggaagaagaatgaagaagaaactgcaggttatgtctgttttaggttttggaatggaaccaaatttatga 21191663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 69805 - 69730
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  69805 gatgggaagaagaatgaagaagaaattgcacgttatgtgtgttctaggttttggaatggaacgaaatttatgaacg 69730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 70668 - 70742
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaac 75  Q
    ||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||  ||||||||||||||||    
T  70668 gatgggaagaagaatgaagaagaaattacacgttatgtgtgttcttggttttggaataaaacaaaatttatgaac 70742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 35021223 - 35021148
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  35021223 gatggaaagaagaatgaagaagaaattgcacgttatgtgtgttctaggttttggaatggaacaaaatttatgaacg 35021148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 38363562 - 38363637
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  38363562 gatgggaagaagaatgaagaagaaattgcacgttgtgtgtgttctaggttttggaatggaacaaaatttatgaacg 38363637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 41670524 - 41670449
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  41670524 gatgggaagaagaatgaagaagaaattgcacgttatgtgtgttctaggttttggaatggaacaaattttatgaacg 41670449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 31640432 - 31640357
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||    
T  31640432 gatgggaagaagaatgaagaagaaattacacgttatgtgtgttctaggttttggaatggaacaaaatatatgaacg 31640357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 38362810 - 38362735
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||    
T  38362810 gatgggaagaagaatgaagaagaaattgcacgttatgtgtgttctaggttttgaaatgcaacaaaatttatgaacg 38362735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 26951052 - 26951125
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaa 74  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||    
T  26951052 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattatagattttggaatggaataaaatttatgaa 26951125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 19142054 - 19142129
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    ||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||| ||||||||||||||||||    
T  19142054 gatgggaagaagaatgaagaataaattgcatgttatgtgtgttctaggttttggaatagaacaaaatttatgaacg 19142129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 2 - 76
Target Start/End: Original strand, 26920335 - 26920409
Alignment:
Q  2 atgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    ||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||| ||||||||||||||    
T  26920335 atgggaagaagaatgaagaagaaattgcatgttatgtgtgttttaggttttggaatggaataaaatttatgaacg 26920409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 41671235 - 41671309
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaac 75  Q
    ||||||||||| ||||||||||||||| |||||||||||| || |||||||||||||| ||||||||||||||||    
T  41671235 gatgggaagaaaaatgaagaagaaattacacgttatgtgtgttttaggttttggaatgtaacaaaatttatgaac 41671309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 35021975 - 35022050
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    ||||| ||||||||| ||||||||||||||| |||| ||| |||||| ||||||||||||||||||||||||||||    
T  35021975 gatggaaagaagaataaagaagaaattgcacattatatgtgttctagattttggaatggaacaaaatttatgaacg 35022050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 26950304 - 26950253
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggtttt 52  Q
    |||||||||||||||||||||||| ||||||||||||||| || ||||||||    
T  26950304 gatgggaagaagaatgaagaagaatttgcacgttatgtgtgttataggtttt 26950253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 13868262 - 13868187
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  13868262 gatgggaagaagaatgaagaagaaattgcacgttatgtgtgttttaggttttggaatggaacaaaatttatgaacg 13868187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 13868996 - 13869062
Alignment:
Q  7 aagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatga 73  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  13868996 aagaagaatgaagaagaaattgcatgttatgtgtgttctaggttttggaatggaacaaaatttatga 13869062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 24160254 - 24160179
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    |||| |||||||||||||||| ||||| |||||||||||| |||||| |||||||| |||||||||||||||||||    
T  24160254 gatgagaagaagaatgaagaataaatttcacgttatgtgtgttctagattttggaagggaacaaaatttatgaacg 24160179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 15509144 - 15509073
Alignment:
Q  5 ggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    |||||||||  ||||||||||||| | || |||||| |||||||||||||||||||||||||||||| ||||    
T  15509144 ggaagaagaccgaagaagaaattgaatgtcatgtgtgttctaggttttggaatggaacaaaatttattaacg 15509073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 12503701 - 12503662
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgt 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  12503701 gatgggaagaagaatgaagaagaaattgcacgttatgtgt 12503662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 32560831 - 32560773
Alignment:
Q  16 gaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaa 74  Q
    ||||||||||||| | |||||||||  |||||||||||||||||||||||| |||||||    
T  32560831 gaagaagaaattgtatgttatgtgtgctctaggttttggaatggaacaaaaattatgaa 32560773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 76
Target Start/End: Original strand, 32561585 - 32561649
Alignment:
Q  5 ggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    |||||||||||||||||||||||||||||||       | ||||||||||||||  ||||||||||||||||    
T  32561585 ggaagaagaatgaagaagaaattgcacgtta-------tttaggttttggaatgacacaaaatttatgaacg 32561649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 10657094 - 10657019
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  10657094 gatgggaagaagaatgaagaagaaattgtacgttatgtgtgttctaggttttggaatggaacaaaatttatgaacg 10657019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 10871239 - 10871164
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  10871239 gatgggaagaagaatgaagaagaaattgtacgttatgtgtgttctaggttttggaatggaacaaaatttatgaacg 10871164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 43939271 - 43939346
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  43939271 gatgggaagaagaatgaagaagaaattgcacgttatgtgtgttctaggttttggaatagaacaaaatttatgaacg 43939346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 43938518 - 43938443
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    |||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  43938518 gatgggaagaagaatgaacaagaaattgcacgttatgtgtgttttaggttttggaatggaacaaaatttatgaacg 43938443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 5 - 76
Target Start/End: Original strand, 50791616 - 50791687
Alignment:
Q  5 ggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  50791616 ggaagaagaatgaagaagaaattgcacgttatgtgtgttctaggttttagaatggaacaaaatttatgaacg 50791687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 51942691 - 51942616
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||    
T  51942691 gatgggaagaagaatgaagaagaaattgcatgttatgtgtgttctaggttttggaatggaacaaattttatgaacg 51942616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 49647713 - 49647787
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaac 75  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||    
T  49647713 gatgggaagaagaatgaagaagaaattgcacgttatgcgtgttctaggttttggaattgaacaaaatttatgaac 49647787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 8079689 - 8079616
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaa 74  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  8079689 gatgggaagaaaaatgaagaagaaattgcacgttatgtgtgttctaggttttggaatgaaacaaaatttatgaa 8079616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 10657846 - 10657919
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaa 74  Q
    |||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||    
T  10657846 gatgggaagaagaatgaagaagaaattgcaagttgtgtgtgttctaggttttggaatggaacaaaatttatgaa 10657919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 10871991 - 10872064
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaa 74  Q
    |||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||    
T  10871991 gatgggaagaagaatgaagaagaaattgcaagttgtgtgtgttctaggttttggaatggaacaaaatttatgaa 10872064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 49646973 - 49646901
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatga 73  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  49646973 gatgggaagaataatgaagaagaaattgcacgttatgtgtgttctaggttttggaattgaacaaaatttatga 49646901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 8080950 - 8081025
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    ||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||    
T  8080950 gatggaaagaagaatgaagaagaaattgcacgttatttgtgttctaggttttggaatgaaacaaaatttatgaacg 8081025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 26919187 - 26919262
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    ||||||||||| |||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||    
T  26919187 gatgggaagaataatgaagaagaaattgcacgttatgtttgttctaggttttggagtggaacaaaatttatgaacg 26919262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 31623492 - 31623417
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    ||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||| ||||    
T  31623492 gatgggaagaagaatgaagaaaaaattgcatgttatgtgtgttctaggttttggaatggaacaaaatttataaacg 31623417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 76
Target Start/End: Complemental strand, 30112981 - 30112907
Alignment:
Q  2 atgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    |||||||||| |||||||| |||||||||||||||| || |||||||||||||||||| ||||||||||||||||    
T  30112981 atgggaagaaaaatgaagaggaaattgcacgttatgcgtgttctaggttttggaatggcacaaaatttatgaacg 30112907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 51943437 - 51943511
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    ||||||||||| |||||||||||||||||| ||||||||| ||||| ||||||||||| |||||||||||||||||    
T  51943437 gatgggaagaaaaatgaagaagaaattgcatgttatgtgtgttcta-gttttggaatgtaacaaaatttatgaacg 51943511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 26918448 - 26918378
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttat 71  Q
    |||| ||||||||||||||||||||||||| |||| |||| || |||||||||||||||||||||||||||    
T  26918448 gatgagaagaagaatgaagaagaaattgcatgttacgtgtgttataggttttggaatggaacaaaatttat 26918378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 7111856 - 7111796
Alignment:
Q  16 gaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    ||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||    
T  7111856 gaagaagaaattgcacgttatgtgtgttataggttttgcaatggaacaaaatttatgaacg 7111796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 39130967 - 39130892
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  39130967 gatgggaagaagaatgaagaagaaattgcacgttatgtgtgttctaggatttggaatggaacaaaatttatgaacg 39130892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 43861625 - 43861550
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  43861625 gatgggaagaagaatgaagaagaaatttcacgttatgtgtgttctaggttttggaatggaacaaaatttatgaacg 43861550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 50937428 - 50937503
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  50937428 gatgagaagaagaatgaagaagaaattgcacgttatgtgtgttctaggttttggaatggaacaaaatttatgaacg 50937503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 42878727 - 42878652
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    ||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  42878727 gatgggaagaagaatcaagaagaaattgcactttatgtgtgttctaggttttggaatggaacaaaatttatgaacg 42878652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 48073694 - 48073769
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||    
T  48073694 gatgggaagaagaatgaagaagaaattgcacattatgtgtgttctaggttttggaatggaacaaaatatatgaacg 48073769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 42879479 - 42879549
Alignment:
Q  6 gaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  42879479 gaagaagaatgaagaagaaattgcacgttatgtgtgttttaggttttggaatggaacaaaatttatgaacg 42879549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 43358499 - 43358575
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttgg-aatggaacaaaatttatgaacg 76  Q
    |||||||| |||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  43358499 gatgggaaaaagaatgaagtagaaattgcacgttatgtgtgttctaggttttggaaatggaacaaaatttatgaacg 43358575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 2228395 - 2228470
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    |||||||| ||||||||| ||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||    
T  2228395 gatgggaaaaagaatgaaaaagaaattgcacgttatgtgtgttctaagttttggaatgaaacaaaatttatgaacg 2228470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 22979695 - 22979770
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    ||||| ||||| ||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||    
T  22979695 gatggcaagaataatgaagaagaaatttcacgttatgtgtgttctagtttttggaatggaacaaaatttatgaacg 22979770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 39131711 - 39131786
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    |||| |||||| |||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||    
T  39131711 gatgagaagaataatgaagaagaaattgcatgttatgtgtgttctagattttggaatggaacaaaatttatgaacg 39131786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 48072958 - 48072883
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    ||||| || ||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||    
T  48072958 gatggaaaaaagaatgaagaagaaattgcacgttatgtgtgttctagggtttggaattgaacaaaatttatgaacg 48072883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 50936679 - 50936604
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    |||| ||| |||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||    
T  50936679 gatgagaaaaagaatgaagaagaaatttcacgttgtgtgtgttctaggttttggaatggaacaaaatttatgaacg 50936604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 76
Target Start/End: Complemental strand, 36465950 - 36465877
Alignment:
Q  2 atgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    |||||||||||| |||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||    
T  36465950 atgggaagaaga-tgaagaagaaattgcaggttatgtgtgttctaggtttttgaatggaacaaaatttatgaacg 36465877  T

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Target: chr3; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 42165031 - 42165097
Alignment:
Q  4 gggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaattta 70  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||    
T  42165031 gggaagaagaatgaagaagaaattgcacgttatgtgtgttctaggttttggaatgaaataaaattta 42165097  T

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Target: chr3; HSP #15
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 22978943 - 22978868
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    |||| ||||||||||||||||||||||||||||||| | | |||||||||||  ||||||||||||||||||||||    
T  22978943 gatgagaagaagaatgaagaagaaattgcacgttatatatgttctaggtttttaaatggaacaaaatttatgaacg 22978868  T

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Target: chr3; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 7042643 - 7042571
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    |||||||||||||||||||||||||||||||||||||    |||| |||||| |||||||||||||||||||||||    
T  7042643 gatgggaagaagaatgaagaagaaattgcacgttatg---gttctgggttttagaatggaacaaaatttatgaacg 7042571  T

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Target: chr3; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 43862354 - 43862423
Alignment:
Q  5 ggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaa 74  Q
    ||||||| |||||||| ||||||||||||||||  | |||||||||||||||||||||||||||||||||    
T  43862354 ggaagaaaaatgaagaggaaattgcacgttatgcatgttctaggttttggaatggaacaaaatttatgaa 43862423  T

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Target: chr3; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 42164280 - 42164205
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    |||| |||||| |||||||| ||||||||||||||||  | ||||||||||||||||| |||||||||||||||||    
T  42164280 gatgagaagaaaaatgaagaggaaattgcacgttatgcatgttctaggttttggaatgaaacaaaatttatgaacg 42164205  T

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Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 36471572 - 36471642
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    ||||||||||||||| ||||||||||||     | ||| | |||||||||||||||||||||||||||||||||||    
T  36471572 gatgggaagaagaattaagaagaaattg-----tgtgtctgttctaggttttggaatggaacaaaatttatgaacg 36471642  T

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Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 23260185 - 23260110
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaacg 76  Q
    ||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  23260185 gatggaaagaagaatgaagaagaaattgcatgttatgtgtgttctaggttttggaatggaacaaaatttatgaacg 23260110  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 4639300 - 4639228
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatga 73  Q
    |||||||||||||||||||||||||||| | ||||||||| ||||||||||| |||||||| |||||||||||    
T  4639300 gatgggaagaagaatgaagaagaaattgtatgttatgtgtgttctaggttttagaatggaagaaaatttatga 4639228  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 23260797 - 23260869
Alignment:
Q  1 gatgggaagaagaatgaagaagaaattgcacgttatgtgtattctaggttttggaatggaacaaaatttatgaac 75  Q
    ||||||||||||| ||||||||||||| |||||||||||| |  |||||||||||||||||||||||||||||||    
T  23260797 gatgggaagaagagtgaagaagaaattacacgttatgtgtgt--taggttttggaatggaacaaaatttatgaac 23260869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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