View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18031_low_12 (Length: 244)

Name: NF18031_low_12
Description: NF18031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18031_low_12
NF18031_low_12
[»] chr1 (22 HSPs)
chr1 (2-219)||(19310469-19310686)
chr1 (4-81)||(43358533-43358610)
chr1 (4-75)||(10186921-10186992)
chr1 (4-62)||(21432011-21432069)
chr1 (5-62)||(44524364-44524421)
chr1 (4-83)||(29681371-29681449)
chr1 (4-62)||(16051007-16051065)
chr1 (5-75)||(35624805-35624875)
chr1 (4-81)||(13654117-13654194)
chr1 (4-81)||(28598091-28598168)
chr1 (4-83)||(48366397-48366475)
chr1 (4-62)||(3465274-3465332)
chr1 (4-81)||(28574079-28574156)
chr1 (82-167)||(35624689-35624774)
chr1 (4-62)||(1187628-1187687)
chr1 (83-169)||(10187024-10187110)
chr1 (82-168)||(21432112-21432198)
chr1 (82-188)||(49054014-49054119)
chr1 (82-167)||(44524465-44524550)
chr1 (82-167)||(49061594-49061678)
chr1 (81-139)||(48366497-48366555)
chr1 (5-50)||(17415531-17415576)
[»] chr4 (19 HSPs)
chr4 (82-186)||(3415599-3415703)
chr4 (4-183)||(47071084-47071268)
chr4 (4-62)||(18716287-18716345)
chr4 (4-62)||(32429629-32429687)
chr4 (6-75)||(30020197-30020266)
chr4 (4-62)||(18670642-18670700)
chr4 (11-62)||(18736960-18737011)
chr4 (5-62)||(34128562-34128619)
chr4 (4-81)||(35095810-35095887)
chr4 (6-62)||(14646615-14646671)
chr4 (4-62)||(3415497-3415555)
chr4 (9-62)||(34279841-34279895)
chr4 (9-62)||(3425050-3425103)
chr4 (82-168)||(18736830-18736916)
chr4 (83-161)||(18670519-18670597)
chr4 (82-203)||(24129104-24129225)
chr4 (4-81)||(35090697-35090774)
chr4 (82-157)||(3425147-3425222)
chr4 (82-146)||(30020297-30020361)
[»] chr2 (8 HSPs)
chr2 (4-62)||(716162-716220)
chr2 (4-62)||(16284237-16284295)
chr2 (4-81)||(14917727-14917804)
chr2 (4-81)||(17720871-17720948)
chr2 (4-81)||(45120168-45120245)
chr2 (6-62)||(42779984-42780040)
chr2 (4-62)||(39196217-39196275)
chr2 (94-148)||(16272133-16272187)
[»] chr5 (14 HSPs)
chr5 (4-62)||(2022764-2022822)
chr5 (5-62)||(43378238-43378295)
chr5 (12-62)||(35369258-35369308)
chr5 (82-167)||(9851256-9851341)
chr5 (4-81)||(13556650-13556727)
chr5 (4-81)||(39903627-39903704)
chr5 (4-81)||(39908740-39908817)
chr5 (83-168)||(2022630-2022715)
chr5 (4-81)||(9872769-9872846)
chr5 (4-81)||(9877884-9877961)
chr5 (9-75)||(25183882-25183948)
chr5 (5-62)||(4553664-4553721)
chr5 (83-158)||(43378119-43378193)
chr5 (83-138)||(29006706-29006761)
[»] chr8 (11 HSPs)
chr8 (83-188)||(25953607-25953712)
chr8 (4-62)||(18608973-18609031)
chr8 (4-81)||(25953504-25953581)
chr8 (4-81)||(14318960-14319037)
chr8 (4-81)||(26982221-26982298)
chr8 (4-62)||(14315256-14315314)
chr8 (4-81)||(10341301-10341378)
chr8 (4-81)||(34108011-34108088)
chr8 (5-81)||(43957195-43957271)
chr8 (4-75)||(26987334-26987405)
chr8 (4-62)||(18884865-18884923)
[»] chr6 (15 HSPs)
chr6 (5-62)||(2887295-2887352)
chr6 (4-81)||(24509485-24509562)
chr6 (6-81)||(21937352-21937427)
chr6 (4-74)||(20752463-20752533)
chr6 (4-81)||(24509173-24509250)
chr6 (5-62)||(2889017-2889074)
chr6 (4-81)||(21275555-21275632)
chr6 (82-167)||(24075619-24075704)
chr6 (6-62)||(21937027-21937083)
chr6 (4-62)||(12909430-12909488)
chr6 (10-75)||(26910702-26910767)
chr6 (83-138)||(21937271-21937326)
chr6 (4-62)||(12934537-12934595)
chr6 (91-186)||(24509284-24509383)
chr6 (83-144)||(28611983-28612044)
[»] chr7 (16 HSPs)
chr7 (83-167)||(12239434-12239518)
chr7 (4-62)||(11056426-11056484)
chr7 (4-81)||(12856571-12856648)
chr7 (4-81)||(14610146-14610223)
chr7 (4-81)||(26050803-26050880)
chr7 (4-81)||(26060162-26060239)
chr7 (6-62)||(35352638-35352694)
chr7 (6-81)||(14615212-14615287)
chr7 (83-182)||(37469098-37469197)
chr7 (5-62)||(4181727-4181784)
chr7 (4-81)||(12851456-12851533)
chr7 (4-81)||(26055916-26055993)
chr7 (4-81)||(26065275-26065352)
chr7 (4-83)||(5436876-5436954)
chr7 (13-79)||(37460194-37460260)
chr7 (110-183)||(24870665-24870738)
[»] chr3 (21 HSPs)
chr3 (6-62)||(29827229-29827285)
chr3 (4-81)||(33703082-33703159)
chr3 (4-81)||(1302590-1302667)
chr3 (4-81)||(5458357-5458434)
chr3 (4-81)||(5481833-5481910)
chr3 (4-81)||(6853297-6853374)
chr3 (4-81)||(8458093-8458170)
chr3 (4-81)||(8464532-8464609)
chr3 (4-81)||(10591640-10591717)
chr3 (4-81)||(10673283-10673360)
chr3 (4-81)||(10678398-10678475)
chr3 (4-81)||(31076747-31076824)
chr3 (4-81)||(33702945-33703022)
chr3 (4-62)||(6858400-6858458)
chr3 (4-50)||(20890874-20890920)
chr3 (4-81)||(4049589-4049666)
chr3 (4-81)||(4054723-4054800)
chr3 (4-81)||(10586527-10586604)
chr3 (4-81)||(31081852-31081929)
chr3 (82-167)||(49784164-49784250)
chr3 (82-139)||(52653994-52654051)
[»] scaffold0391 (2 HSPs)
scaffold0391 (4-81)||(16389-16466)
scaffold0391 (9-81)||(16294-16366)
[»] scaffold0006 (1 HSPs)
scaffold0006 (4-81)||(143878-143955)
[»] scaffold0005 (1 HSPs)
scaffold0005 (6-62)||(170619-170675)
[»] scaffold0756 (1 HSPs)
scaffold0756 (4-75)||(3933-4004)
[»] scaffold0223 (1 HSPs)
scaffold0223 (4-45)||(7322-7363)


Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 2 - 219
Target Start/End: Complemental strand, 19310686 - 19310469
Alignment:
Q  2 ttgcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctttccaacgaatttaagtgcacacttca 101  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  19310686 ttgcaaccccatgcgctttgagtttcacatgcataaccattaaacttttcaggtttcaagtacaacagcctctttccaacgaatttatgtgcacacttca 19310587  T
Q  102 tcatatacatctttatcatctttttaatcaagttattgtagcagacctccaacacaaattctaacaatctttaggttcgatttatgacgtatttgtggtt 201  Q
    |||||||||||||||||||||| ||| | ||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  19310586 tcatatacatctttatcatcttcttagttaagttattgtagcagaccttcaacacaagttctaacaatctttaggtttgatttatgacgtatttgtggtt 19310487  T
Q  202 aatggctgtaacgttcat 219  Q
    |||| |||||||||||||    
T  19310486 aatgactgtaacgttcat 19310469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 43358610 - 43358533
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctttccaac 81  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||| |||| |||||    
T  43358610 gcaacctcatgcgctttgagttttacatgcataatcattaaacttttcaggtttcaagtgcaacagcatcttcccaac 43358533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 10186921 - 10186992
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctt 75  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||| ||| ||||    
T  10186921 gcaaccccatgcgctttgagttttacatgtataatcattaaacttttcaggtttcaagtgcaacagcatctt 10186992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 21432011 - 21432069
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagt 62  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  21432011 gcaacctcatgcgatttgagttttacatgcataaccattaaacttttcaggtttcaagt 21432069  T

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Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 44524364 - 44524421
Alignment:
Q  5 caaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagt 62  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  44524364 caaccccatgcgctttgagttttgcatgcataaccattacacttttcaggtttcaagt 44524421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 4 - 83
Target Start/End: Complemental strand, 29681449 - 29681371
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctttccaacga 83  Q
    ||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||| ||| ||| |||| |||||||    
T  29681449 gcaaccccatgcgctttgagttt-acatgcataaccattagatttttcaggtttcaagtgcaacagcatcttcccaacga 29681371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 16051065 - 16051007
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagt 62  Q
    |||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  16051065 gcaaccccgtgcgctctgagttttacatgcataaccattaaatttttcaggtttcaagt 16051007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 35624875 - 35624805
Alignment:
Q  5 caaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctt 75  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||| || |||| ||||    
T  35624875 caaccccacgcgctttgagttttacatgcataaccattaaatttttcatgtttcaagtgcagtagcatctt 35624805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 13654194 - 13654117
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctttccaac 81  Q
    ||||||||||||||||||| |||||||||| ||| |||||||| ||||||||||||||| ||  |||||||| |||||    
T  13654194 gcaaccccatgcgctttgaattttacatgcgtaagcattaaacatttcaggtttcaagtgcagcagcctcttcccaac 13654117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 28598168 - 28598091
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctttccaac 81  Q
    |||||||||| ||||||||||||||||||||| | |||||||| ||||||||||||||| ||  |||||||| |||||    
T  28598168 gcaaccccatacgctttgagttttacatgcatgatcattaaacatttcaggtttcaagtgcagcagcctcttcccaac 28598091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 83
Target Start/End: Original strand, 48366397 - 48366475
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctttccaacga 83  Q
    ||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||| ||| | | |||| |||||||    
T  48366397 gcaaccccatgcgctttgagttt-acatgcataaccattagatttttcaggtttcaagtgcaacaacatcttcccaacga 48366475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 3465332 - 3465274
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagt 62  Q
    |||||||||| ||||||||||||||||||||| | |||||||| |||||||||||||||    
T  3465332 gcaaccccatacgctttgagttttacatgcatgatcattaaacatttcaggtttcaagt 3465274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 28574156 - 28574079
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctttccaac 81  Q
    |||||||||| |||||| |||||||||||||| | |||||||| ||||||||||||||| ||  |||||||| |||||    
T  28574156 gcaaccccatacgctttaagttttacatgcatgatcattaaacatttcaggtttcaagtgcagcagcctcttcccaac 28574079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 82 - 167
Target Start/End: Complemental strand, 35624774 - 35624689
Alignment:
Q  82 gaatttaagtgcacacttcatcatatacatctttatcatctttttaatcaagttattgtagcagacctccaacacaaattctaaca 167  Q
    ||||||| ||||||||||| | |||| |||||| |||||||| ||  ||||||||||| |||||||| ||||||||| ||||||||    
T  35624774 gaatttatgtgcacacttcgtaatattcatcttcatcatcttcttggtcaagttattgcagcagacccccaacacaagttctaaca 35624689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 1187687 - 1187628
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttc-aggtttcaagt 62  Q
    |||||||||||| |||||||||||||||||||||| |||||| ||||| |||||||||||    
T  1187687 gcaaccccatgcactttgagttttacatgcataactattaaatttttctaggtttcaagt 1187628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 83 - 169
Target Start/End: Original strand, 10187024 - 10187110
Alignment:
Q  83 aatttaagtgcacacttcatcatatacatctttatcatctttttaatcaagttattgtagcagacctccaacacaaattctaacaat 169  Q
    |||||| |||||| ||||||||||  ||| ||||||||||| || ||||||||||||||||||||| |  |||||| ||| ||||||    
T  10187024 aatttatgtgcacgcttcatcatagtcatatttatcatcttcttgatcaagttattgtagcagaccccgcacacaagttccaacaat 10187110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 82 - 168
Target Start/End: Original strand, 21432112 - 21432198
Alignment:
Q  82 gaatttaagtgcacacttcatcatatacatctttatcatctttttaatcaagttattgtagcagacctccaacacaaattctaacaa 168  Q
    ||||||| |||||||||||| ||| | |||||| |||||||| ||  ||||||||||| |||||||| ||||||||| ||| |||||    
T  21432112 gaatttatgtgcacacttcagcatgttcatcttcatcatcttcttggtcaagttattgcagcagacccccaacacaagttccaacaa 21432198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 82 - 188
Target Start/End: Original strand, 49054014 - 49054119
Alignment:
Q  82 gaatttaagtgcacacttcatcatatacatctttatcatctttttaatcaagttattgtagcagacctccaacacaaattctaacaatctttaggttcga 181  Q
    ||||||| ||| |||||||||||| | ||||||  ||||||||||  | || |||| | |||||||| |||||| || ||| ||||||||||||||||||    
T  49054014 gaatttatgtgtacacttcatcatgttcatcttcttcatctttttggtaaa-ttatcgcagcagacccccaacataagttccaacaatctttaggttcga 49054112  T
Q  182 tttatga 188  Q
    |||||||    
T  49054113 tttatga 49054119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 167
Target Start/End: Original strand, 44524465 - 44524550
Alignment:
Q  82 gaatttaagtgcacacttcatcatatacatctttatcatctttttaatcaagttattgtagcagacctccaacacaaattctaaca 167  Q
    ||||||| ||||| |||||||||| | |||||| |||||||| || |||||||||||| | |||||| |||| |||| ||| ||||    
T  44524465 gaatttatgtgcatacttcatcatgttcatcttcatcatcttcttgatcaagttattgcaacagacccccaatacaagttccaaca 44524550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 167
Target Start/End: Original strand, 49061594 - 49061678
Alignment:
Q  82 gaatttaagtgcacacttcatcatatacatctttatcatctttttaatcaagttattgtagcagacctccaacacaaattctaaca 167  Q
    ||||||| |||||||||||||||| | ||||||  ||||||||||  | || |||||| |||||||| ||||||||| ||||||||    
T  49061594 gaatttatgtgcacacttcatcatgttcatcttcttcatctttttggtaaaattattgcagcagacc-ccaacacaagttctaaca 49061678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 139
Target Start/End: Original strand, 48366497 - 48366555
Alignment:
Q  81 cgaatttaagtgcacacttcatcatatacatctttatcatctttttaatcaagttattg 139  Q
    ||||||||  ||||||||||||||| | |||||| |||||||| || ||||||||||||    
T  48366497 cgaatttatttgcacacttcatcatgttcatcttcatcatcttcttgatcaagttattg 48366555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 17415531 - 17415576
Alignment:
Q  5 caaccccatgcgctttgagttttacatgcataaccattaaactttt 50  Q
    ||||||||| | |||||| |||||| ||||||||||||||||||||    
T  17415531 caaccccatacactttgatttttacgtgcataaccattaaactttt 17415576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 82 - 186
Target Start/End: Original strand, 3415599 - 3415703
Alignment:
Q  82 gaatttaagtgcacacttcatcatatacatctttatcatctttttaatcaagttattgtagcagacctccaacacaaattctaacaatctttaggttcga 181  Q
    ||||||| |||||||||||||||| | |||||| |||||||| ||  ||||||||||| |||||||| ||||||||| ||| ||||||||||||||||||    
T  3415599 gaatttatgtgcacacttcatcatgttcatcttcatcatcttcttggtcaagttattgcagcagacccccaacacaagttccaacaatctttaggttcga 3415698  T
Q  182 tttat 186  Q
    |||||    
T  3415699 tttat 3415703  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 183
Target Start/End: Complemental strand, 47071268 - 47071084
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttc-aagtacaatagcctctttc---caacgaatttaagtgcacactt 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| | | ||||||   |||  || |||  |  ||||||    
T  47071268 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaaagtgcaacaacatctttctaacaatcaagtta--tatacactt 47071171  T
Q  100 catcatatacatctttatcatctttttaatcaagttattgtagcagacctccaacacaaattct----aacaatctttaggttcgatt 183  Q
    | |||| | |||||| |||||||| ||| |||||||||||||||||||| |||| |||| || |    ||||||||||||||||||||    
T  47071170 cgtcatgttcatcttcatcatcttcttagtcaagttattgtagcagacc-ccaaaacaagttatataaaacaatctttaggttcgatt 47071084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 18716345 - 18716287
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagt 62  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  18716345 gcaaccccatgcgctttgagttttacatgcattaccattaaacttttcaggtttcaagt 18716287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 32429629 - 32429687
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagt 62  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  32429629 gcaaccccatgcgctttgagttttacatgcataaccattaaaattttcaggtttcaagt 32429687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 30020197 - 30020266
Alignment:
Q  6 aaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctt 75  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||| ||||    
T  30020197 aaccccatgcgctttgagttttacatgcataaccattgaacttttcaggtttcaagtgcaacagcatctt 30020266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 18670700 - 18670642
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagt 62  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  18670700 gcaactccatgcgctttgaattttacatgcataaccattaaacttttcaggtttcaagt 18670642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 18737011 - 18736960
Alignment:
Q  11 catgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagt 62  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  18737011 catgcgctttgagttttacatgcataaccattaaacttttcaagtttcaagt 18736960  T

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Target: chr4; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 34128562 - 34128619
Alignment:
Q  5 caaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagt 62  Q
    |||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  34128562 caaccctatgcactttgagttttacatgcataaccattaaacttttaaggtttcaagt 34128619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 35095887 - 35095810
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctttccaac 81  Q
    |||||||||| ||||||||||||||||||||| | |||||||| ||||||||||||||| ||  |||||||| |||||    
T  35095887 gcaaccccatacgctttgagttttacatgcatgatcattaaacatttcaggtttcaagtgcagcagcctcttcccaac 35095810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 14646615 - 14646671
Alignment:
Q  6 aaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagt 62  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||    
T  14646615 aaccccatgagctttaagttttacatgcataaccattaaacttttcagatttcaagt 14646671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 3415497 - 3415555
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagt 62  Q
    |||| ||||||||||||||||||||||||||| |  |||||||||||||||||||||||    
T  3415497 gcaatcccatgcgctttgagttttacatgcatgataattaaacttttcaggtttcaagt 3415555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 34279841 - 34279895
Alignment:
Q  9 cccatgcgctttgagttttacatgcataaccatt-aaacttttcaggtttcaagt 62  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  34279841 cccatgcgctttgagttttacatgcataaccattaaaacgtttcaggtttcaagt 34279895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 3425050 - 3425103
Alignment:
Q  9 cccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagt 62  Q
    ||||||||||||||||||| |||||||||  |||||||||||||||||||||||    
T  3425050 cccatgcgctttgagttttgcatgcataataattaaacttttcaggtttcaagt 3425103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 82 - 168
Target Start/End: Complemental strand, 18736916 - 18736830
Alignment:
Q  82 gaatttaagtgcacacttcatcatatacatctttatcatctttttaatcaagttattgtagcagacctccaacacaaattctaacaa 168  Q
    ||||||| |||||||||||||||  | |||||| |||||||| || | |||||||||  |||||||| ||||||||||||| |||||    
T  18736916 gaatttatgtgcacacttcatcaagttcatcttaatcatcttcttgaccaagttattacagcagacccccaacacaaattccaacaa 18736830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 83 - 161
Target Start/End: Complemental strand, 18670597 - 18670519
Alignment:
Q  83 aatttaagtgcacacttcatcatatacatctttatcatctttttaatcaagttattgtagcagacctccaacacaaatt 161  Q
    |||||| |||||||||||||||| | ||||||||||||||| ||  ||||||||||| | |||||  ||||||| ||||    
T  18670597 aatttatgtgcacacttcatcatgttcatctttatcatcttcttggtcaagttattgcaacagacgcccaacactaatt 18670519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 203
Target Start/End: Complemental strand, 24129225 - 24129104
Alignment:
Q  82 gaatttaagtgcacacttcatcatatacatctttatcatctttttaatcaagttattgtagcagacctccaacacaaattctaacaatctttaggttcga 181  Q
    ||||||| ||||||  |||||||||| |||| | |||  ||| || ||||| ||||| |||| |||||||||||||  ||||||| || ||||||||| |    
T  24129225 gaatttatgtgcacttttcatcatattcatcatcatcgccttcttgatcaaattattatagctgacctccaacacatgttctaaccatttttaggttcaa 24129126  T
Q  182 tttatgacgtatttgtggttaa 203  Q
    |||||    |||||||||||||    
T  24129125 tttatcgtttatttgtggttaa 24129104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 35090774 - 35090697
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctttccaac 81  Q
    |||||||||| | |||| | |||||||||||| | |||||||| ||||||||||||||| ||  |||||||| |||||    
T  35090774 gcaaccccatacactttaaattttacatgcatgatcattaaacatttcaggtttcaagtgcagcagcctcttcccaac 35090697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 157
Target Start/End: Original strand, 3425147 - 3425222
Alignment:
Q  82 gaatttaagtgcacacttcatcatatacatctttatcatctttttaatcaagttattgtagcagacctccaacaca 157  Q
    ||||||| |||||||||| ||||| | |||||| |||||||| ||  ||||||||||| |||||| | ||||||||    
T  3425147 gaatttatgtgcacactttatcatgttcatcttcatcatcttcttggtcaagttattgcagcagatccccaacaca 3425222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 146
Target Start/End: Original strand, 30020297 - 30020361
Alignment:
Q  82 gaatttaagtgcacacttcatcatatacatctttatcatctttttaatcaagttattgtagcaga 146  Q
    |||||||  ||||||||||||||||  |||||| |||||||| ||  ||||||||||| ||||||    
T  30020297 gaatttatatgcacacttcatcatagtcatcttcatcatcttcttggtcaagttattgcagcaga 30020361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 716220 - 716162
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagt 62  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  716220 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagt 716162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 16284295 - 16284237
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagt 62  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  16284295 gcaaccccatgcgctttgagttttacatgcataatcattaaacttttcaggtttcaagt 16284237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 14917727 - 14917804
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctttccaac 81  Q
    |||||||||| ||||||||||||||||||||| | |||||||| ||||||||||||||| ||  |||||||| |||||    
T  14917727 gcaaccccatacgctttgagttttacatgcatgatcattaaacatttcaggtttcaagtgcagcagcctcttcccaac 14917804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 17720871 - 17720948
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctttccaac 81  Q
    |||||||||| ||||||||||||||||||||| | |||||||| ||||||||||||||| ||  |||||||| |||||    
T  17720871 gcaaccccatacgctttgagttttacatgcatgatcattaaacatttcaggtttcaagtgcagcagcctcttcccaac 17720948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 45120245 - 45120168
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctttccaac 81  Q
    |||||||||| ||||||||||||||||||||| | |||||||| ||||||||||||||| ||  |||||||| |||||    
T  45120245 gcaaccccatacgctttgagttttacatgcatgatcattaaacatttcaggtttcaagtgcagcagcctcttcccaac 45120168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 42780040 - 42779984
Alignment:
Q  6 aaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagt 62  Q
    ||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||    
T  42780040 aaccccatatgctttgagttttacatgcataatcattaaacttttcaggtttcaagt 42779984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 39196217 - 39196275
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagt 62  Q
    |||||||||| ||||||||||||||||||||| | |||||||| |||||||||||||||    
T  39196217 gcaaccccatacgctttgagttttacatgcatgatcattaaacatttcaggtttcaagt 39196275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 94 - 148
Target Start/End: Complemental strand, 16272187 - 16272133
Alignment:
Q  94 acacttcatcatatacatctttatcatctttttaatcaagttattgtagcagacc 148  Q
    |||||||||||| | ||||||||||||||| ||| ||||||||||| ||||||||    
T  16272187 acacttcatcatgttcatctttatcatcttcttagtcaagttattgcagcagacc 16272133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 2022822 - 2022764
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagt 62  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2022822 gcaacctcatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagt 2022764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 43378295 - 43378238
Alignment:
Q  5 caaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagt 62  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  43378295 caaccccatgcgctttgagttttacatgcataaccattaaacttttcaagtttcaagt 43378238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 35369258 - 35369308
Alignment:
Q  12 atgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagt 62  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35369258 atgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagt 35369308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 82 - 167
Target Start/End: Complemental strand, 9851341 - 9851256
Alignment:
Q  82 gaatttaagtgcacacttcatcatatacatctttatcatctttttaatcaagttattgtagcagacctccaacacaaattctaaca 167  Q
    ||||||| ||||||| |||||||| | |||||| ||||||||||| |||||||||||| ||||||||||| |||||  ||||||||    
T  9851341 gaatttatgtgcacaattcatcatgttcatcttcatcatctttttgatcaagttattgcagcagacctcctacacatgttctaaca 9851256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 13556650 - 13556727
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctttccaac 81  Q
    |||||||||| ||||||||||||||||||||| | |||||||| ||||||||||||||| || || |||||| |||||    
T  13556650 gcaaccccatacgctttgagttttacatgcatgatcattaaacatttcaggtttcaagtgcagtaacctcttcccaac 13556727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 39903704 - 39903627
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctttccaac 81  Q
    |||||||||| ||||||||||||||||||||| | |||||||| |||| |||||||||| ||  ||||||||||||||    
T  39903704 gcaaccccatacgctttgagttttacatgcatgatcattaaacatttcgggtttcaagtgcagcagcctctttccaac 39903627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 39908817 - 39908740
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctttccaac 81  Q
    |||||||||| ||||||||||||||||||||| | |||||||| ||||||||||||||| ||  |||||||| |||||    
T  39908817 gcaaccccatacgctttgagttttacatgcatgatcattaaacatttcaggtttcaagtgcagcagcctcttcccaac 39908740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 83 - 168
Target Start/End: Complemental strand, 2022715 - 2022630
Alignment:
Q  83 aatttaagtgcacacttcatcatatacatctttatcatctttttaatcaagttattgtagcagacctccaacacaaattctaacaa 168  Q
    |||||| ||||||| |||||||| | |||||| |||||||| || |||||||||||| |||||||| ||||||||| ||| |||||    
T  2022715 aatttatgtgcacatttcatcatgttcatcttcatcatcttcttgatcaagttattgcagcagacccccaacacaagttccaacaa 2022630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 9872769 - 9872846
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctttccaac 81  Q
    |||||||||| | ||||||||||||||||||| | |||||||| ||||||||||||||| ||  |||||||| |||||    
T  9872769 gcaaccccatacactttgagttttacatgcatgatcattaaacatttcaggtttcaagtgcagcagcctcttcccaac 9872846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 9877884 - 9877961
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctttccaac 81  Q
    |||||||||| | ||||||||||||||||||| | |||||||| ||||||||||||||| ||  |||||||| |||||    
T  9877884 gcaaccccatacactttgagttttacatgcatgatcattaaacatttcaggtttcaagtgcagcagcctcttcccaac 9877961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 25183948 - 25183882
Alignment:
Q  9 cccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctt 75  Q
    |||||||||||| |||||||||||||||| |||||||  ||||||||||||||| ||  ||||||||    
T  25183948 cccatgcgctttcagttttacatgcataatcattaaagatttcaggtttcaagtgcagaagcctctt 25183882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 4553721 - 4553664
Alignment:
Q  5 caaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagt 62  Q
    ||||||||| |||||||| |||||| |||||||||||||||||||| || ||||||||    
T  4553721 caaccccatacgctttgaattttacgtgcataaccattaaactttttagatttcaagt 4553664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 158
Target Start/End: Complemental strand, 43378193 - 43378119
Alignment:
Q  83 aatttaagtgcacacttcatcatatacatctttatcatctttttaatcaagttattgtagcagacctccaacacaa 158  Q
    |||||| |||||||||||||||||| |||||| ||||||||  |  ||||||||||| |||||||| |||||||||    
T  43378193 aatttatgtgcacacttcatcatattcatcttcatcatcttcatggtcaagttattgcagcagacc-ccaacacaa 43378119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 138
Target Start/End: Original strand, 29006706 - 29006761
Alignment:
Q  83 aatttaagtgcacacttcatcatatacatctttatcatctttttaatcaagttatt 138  Q
    |||||| |||||| ||||||||||| |||||| ||||||||||| ||||| |||||    
T  29006706 aatttatgtgcactcttcatcatattcatcttgatcatcttttttatcaaattatt 29006761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 83 - 188
Target Start/End: Original strand, 25953607 - 25953712
Alignment:
Q  83 aatttaagtgcacacttcatcatatacatctttatcatctttttaatcaagttattgtagcagacctccaacacaaattctaacaatctttaggttcgat 182  Q
    |||||| |||||||||||||||||| |||||| || ||||| ||  | ||||||||| | |||||| ||||||||| || ||||||||||||||||||||    
T  25953607 aatttatgtgcacacttcatcatattcatcttcattatcttcttggttaagttattgcatcagacccccaacacaagttgtaacaatctttaggttcgat 25953706  T
Q  183 ttatga 188  Q
    ||||||    
T  25953707 ttatga 25953712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 18608973 - 18609031
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagt 62  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  18608973 gcaaccccatgtgctttgagttttacatgcataaccatcaaacttttcaggtttcaagt 18609031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 25953504 - 25953581
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctttccaac 81  Q
    |||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||| || ||| ||||| |||||    
T  25953504 gcaaccccatgcactttgagttttacatgcttaaccatcaaacttttcaggtttcaagtgcagtagtctcttcccaac 25953581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 14318960 - 14319037
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctttccaac 81  Q
    |||||||||| ||||||||||||||||||||| | |||||||| ||||||||||||||| ||  |||||||| |||||    
T  14318960 gcaaccccatacgctttgagttttacatgcatgatcattaaacatttcaggtttcaagtgcagcagcctcttcccaac 14319037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 26982221 - 26982298
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctttccaac 81  Q
    |||||||||| ||||||||||||||||||||| | |||||||| ||||||||||||||| ||  |||||||| |||||    
T  26982221 gcaaccccatacgctttgagttttacatgcatgatcattaaacatttcaggtttcaagtgcagcagcctcttcccaac 26982298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 14315256 - 14315314
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagt 62  Q
    |||||||||| ||||||||||||||||||||| | |||||||| |||||||||||||||    
T  14315256 gcaaccccatacgctttgagttttacatgcatgatcattaaacatttcaggtttcaagt 14315314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 10341301 - 10341378
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctttccaac 81  Q
    |||| ||||||||||||||||||||||||||||| |||| ||||||||| ||||||| | || |||| |||| |||||    
T  10341301 gcaatcccatgcgctttgagttttacatgcataatcattgaacttttcaagtttcaaatgcagtagcatcttcccaac 10341378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 34108088 - 34108011
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctttccaac 81  Q
    |||||||||| |||||||| |||||||||||| | |||||||| ||||||||||||||| ||  |||||||| |||||    
T  34108088 gcaaccccatacgctttgatttttacatgcatgatcattaaacatttcaggtttcaagtgcagcagcctcttcccaac 34108011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 43957195 - 43957271
Alignment:
Q  5 caaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctttccaac 81  Q
    ||||||||| |||||||| |||||||||||| | |||||||| ||||||||||||||| ||  |||||||| |||||    
T  43957195 caaccccatacgctttgaattttacatgcatgatcattaaacatttcaggtttcaagtgcagcagcctcttcccaac 43957271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 26987334 - 26987405
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctt 75  Q
    |||||| ||| |||||| |||||||||||||| | |||||||| ||||||||||||||| ||  ||||||||    
T  26987334 gcaaccacatacgctttaagttttacatgcatgatcattaaacatttcaggtttcaagtgcagcagcctctt 26987405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 18884923 - 18884865
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagt 62  Q
    |||||||||| || |||||||||||  ||||||||| ||||||||||||| || |||||    
T  18884923 gcaaccccatacgttttgagttttatgtgcataaccgttaaacttttcagattccaagt 18884865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 2887352 - 2887295
Alignment:
Q  5 caaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagt 62  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2887352 caaccccatgcgctttgagttttacatacataaccattaaacttttcaggtttcaagt 2887295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 24509562 - 24509485
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctttccaac 81  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||| | |||||| |||||    
T  24509562 gcaaccccatgcgatttgagttttacatgcataaccattaaacttttaaggtttcaagtgcaacaacctcttcccaac 24509485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 6 - 81
Target Start/End: Complemental strand, 21937427 - 21937352
Alignment:
Q  6 aaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctttccaac 81  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||| || ||||| |||||    
T  21937427 aaccccatgcgctttgagttttatatgcattaccattaaacttttcaggtttcaagtgcaacagtctcttcccaac 21937352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 20752463 - 20752533
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctct 74  Q
    ||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||| ||| |||||||    
T  20752463 gcaaccccatgtgctttgagttttacatgcataatcattaaacatttcaggtttcaagtgcaacagcctct 20752533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 24509173 - 24509250
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctttccaac 81  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||| ||  |||||||| |||||    
T  24509173 gcaaccccatgcgttttgagttttacatgcataaccattaaacttttgaagtttcaagtgcagcagcctcttcccaac 24509250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 2889074 - 2889017
Alignment:
Q  5 caaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagt 62  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||    
T  2889074 caaccccatgcgctttgagttttacattcataaccattaaactttccagatttcaagt 2889017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 21275632 - 21275555
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctttccaac 81  Q
    |||||||||| ||||||||||||||||||||| | |||||||| ||||||||||||||| ||  |||||||| |||||    
T  21275632 gcaaccccatacgctttgagttttacatgcatgatcattaaacatttcaggtttcaagtgcagcagcctcttcccaac 21275555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 82 - 167
Target Start/End: Complemental strand, 24075704 - 24075619
Alignment:
Q  82 gaatttaagtgcacacttcatcatatacatctttatcatctttttaatcaagttattgtagcagacctccaacacaaattctaaca 167  Q
    |||||||  |||||||||  |||||| ||||||||||||||| ||||||||||||||| |||||||| | ||||||  ||||||||    
T  24075704 gaatttatatgcacactttgtcatattcatctttatcatcttcttaatcaagttattgcagcagacccctaacacaggttctaaca 24075619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 21937027 - 21937083
Alignment:
Q  6 aaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagt 62  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||  |||||||||    
T  21937027 aaccctatgcactttgagttttacatgcataaccattaaacttttcgagtttcaagt 21937083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 12909488 - 12909430
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagt 62  Q
    |||||||||||||||||||  |||||||||||||| |||||  ||||||||||| ||||    
T  12909488 gcaaccccatgcgctttgaagtttacatgcataacgattaattttttcaggttttaagt 12909430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 75
Target Start/End: Original strand, 26910702 - 26910767
Alignment:
Q  10 ccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctt 75  Q
    |||||| |||||| |||||||||||||| | |||| ||||||||||||||||| ||| | ||||||    
T  26910702 ccatgcactttgaattttacatgcataatccttaatcttttcaggtttcaagtgcaacaacctctt 26910767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 138
Target Start/End: Complemental strand, 21937326 - 21937271
Alignment:
Q  83 aatttaagtgcacacttcatcatatacatctttatcatctttttaatcaagttatt 138  Q
    |||||| |||||||||||||||||| |||||| |||||||| ||  ||||||||||    
T  21937326 aatttatgtgcacacttcatcatattcatcttcatcatcttcttggtcaagttatt 21937271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 12934595 - 12934537
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagt 62  Q
    |||||||||||||||||||  |||||||||||||  |||||  ||||||||||| ||||    
T  12934595 gcaaccccatgcgctttgaagtttacatgcataatgattaattttttcaggttttaagt 12934537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 186
Target Start/End: Original strand, 24509284 - 24509383
Alignment:
Q  91 tgcacacttcatcatatacatctttatcatctttttaatcaagttattgtagcagacctccaacacaaat----tctaacaatctttaggttcgatttat 186  Q
    |||| |||||||||||  |||||| |||||||| ||  ||||||| ||| |||||||| | ||||||||     || |||||||||||||||||||||||    
T  24509284 tgcaaacttcatcatactcatcttcatcatcttcttggtcaagtttttgcagcagacccctaacacaaacaaaatccaacaatctttaggttcgatttat 24509383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 144
Target Start/End: Complemental strand, 28612044 - 28611983
Alignment:
Q  83 aatttaagtgcacacttcatcatatacatctttatcatctttttaatcaagttattgtagca 144  Q
    |||||| |||||||||||||||| | ||| || |||||||| || |||||||||||| ||||    
T  28612044 aatttatgtgcacacttcatcatgttcatattcatcatcttcttgatcaagttattgcagca 28611983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 83 - 167
Target Start/End: Complemental strand, 12239518 - 12239434
Alignment:
Q  83 aatttaagtgcacacttcatcatatacatctttatcatctttttaatcaagttattgtagcagacctccaacacaaattctaaca 167  Q
    |||||| |||||||||||||||||| |||| | |||||||| ||||||||||||||| |||| ||||||||||||| ||||||||    
T  12239518 aatttatgtgcacacttcatcatattcatcatcatcatcttcttaatcaagttattgcagcaaacctccaacacaagttctaaca 12239434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 11056484 - 11056426
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagt 62  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||    
T  11056484 gcaaccccatgcgctttgagttttacatgcataatcattaaacatttcatgtttcaagt 11056426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 12856648 - 12856571
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctttccaac 81  Q
    |||||||||| ||||||||||||||||||||| | |||||||| ||||||||||||||| ||  |||||||| |||||    
T  12856648 gcaaccccatacgctttgagttttacatgcatgatcattaaacatttcaggtttcaagtgcagcagcctcttcccaac 12856571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 14610223 - 14610146
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctttccaac 81  Q
    |||||||||| ||||||||||||||||||||| | |||||||| ||||||||||||||| ||  |||||||| |||||    
T  14610223 gcaaccccatacgctttgagttttacatgcatgatcattaaacatttcaggtttcaagtgcagcagcctcttcccaac 14610146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 26050880 - 26050803
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctttccaac 81  Q
    |||||||||| ||||||||||||||||||||| | |||||||| ||||||||||||||| ||  |||||||| |||||    
T  26050880 gcaaccccatacgctttgagttttacatgcatgatcattaaacatttcaggtttcaagtgcagcagcctcttcccaac 26050803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 26060239 - 26060162
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctttccaac 81  Q
    |||||||||| ||||||||||||||||||||| | |||||||| ||||||||||||||| ||  |||||||| |||||    
T  26060239 gcaaccccatacgctttgagttttacatgcatgatcattaaacatttcaggtttcaagtgcagcagcctcttcccaac 26060162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 35352638 - 35352694
Alignment:
Q  6 aaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagt 62  Q
    |||||||||||||||||||||||||||| ||||||||||||||| || |||||||||    
T  35352638 aaccccatgcgctttgagttttacatgcttaaccattaaactttccatgtttcaagt 35352694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 81
Target Start/End: Complemental strand, 14615287 - 14615212
Alignment:
Q  6 aaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctttccaac 81  Q
    |||||||| ||||||||||||||||||||| | |||||||| ||||||||||||||| ||  |||||||| |||||    
T  14615287 aaccccatacgctttgagttttacatgcatgatcattaaacatttcaggtttcaagtgcagcagcctcttcccaac 14615212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 83 - 182
Target Start/End: Original strand, 37469098 - 37469197
Alignment:
Q  83 aatttaagtgcacacttcatcatatacatctttatcatctttttaatcaagttattgtagcagacctccaacacaaattctaacaatctttaggttcgat 182  Q
    |||||| ||||||| || ||||| | |||||| |||||||| || ||||||||||||  ||| ||| ||||||||  |||||||||||||||||||||||    
T  37469098 aatttatgtgcacatttaatcatgttcatcttcatcatcttcttgatcaagttattgctgcaaacccccaacacaggttctaacaatctttaggttcgat 37469197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 4181727 - 4181784
Alignment:
Q  5 caaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagt 62  Q
    ||||||||| |||||||| |||||||| |||||||||||||||||||| |||||||||    
T  4181727 caaccccatacgctttgaattttacatacataaccattaaacttttcaagtttcaagt 4181784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 12851533 - 12851456
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctttccaac 81  Q
    |||||||||| ||||||||||||||||||||| | |||||||| |||||| |||||||| ||  |||||||| |||||    
T  12851533 gcaaccccatacgctttgagttttacatgcatgatcattaaacatttcagttttcaagtgcagcagcctcttcccaac 12851456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 26055993 - 26055916
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctttccaac 81  Q
    |||||| ||| ||||||||||||||||||||| | |||||||| ||||||||||||||| ||  |||||||| |||||    
T  26055993 gcaacctcatacgctttgagttttacatgcatgatcattaaacatttcaggtttcaagtgcagcagcctcttcccaac 26055916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 26065352 - 26065275
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctttccaac 81  Q
    |||||| ||| ||||||||||||||||||||| | |||||||| ||||||||||||||| ||  |||||||| |||||    
T  26065352 gcaacctcatacgctttgagttttacatgcatgatcattaaacatttcaggtttcaagtgcagcagcctcttcccaac 26065275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 83
Target Start/End: Original strand, 5436876 - 5436954
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctttccaacga 83  Q
    ||||||||||||||||||||||| |||||||||||||||| | |||||| ||||||||| ||  ||| |||| |||||||    
T  5436876 gcaaccccatgcgctttgagttt-acatgcataaccattagatttttcaagtttcaagtgcagcagcatcttcccaacga 5436954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 37460194 - 37460260
Alignment:
Q  13 tgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctttcca 79  Q
    |||||||| |||||||||||||||| |||||||  ||||||||||||||| ||| || |||||||||    
T  37460194 tgcgctttaagttttacatgcataatcattaaaaatttcaggtttcaagtccaacagtctctttcca 37460260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 24870665 - 24870738
Alignment:
Q  110 atctttatcatctttttaatcaagttattgtagcagacctccaacacaaattctaacaatctttaggttcgatt 183  Q
    ||||| |||||||| || |||||||||||| |||| ||| |||||| |  ||||||||||||||||||||||||    
T  24870665 atcttcatcatcttcttcatcaagttattgcagcaaacccccaacataggttctaacaatctttaggttcgatt 24870738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 29827285 - 29827229
Alignment:
Q  6 aaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagt 62  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  29827285 aaccccatgcgctttgagttttacatgcataaccattaaacttttcaggttttaagt 29827229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 33703159 - 33703082
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctttccaac 81  Q
    |||||||||| ||||||||||||||||||||| | |||||||| ||||||||||||||| ||  ||||||||||||||    
T  33703159 gcaaccccatacgctttgagttttacatgcatgatcattaaacatttcaggtttcaagtgcagcagcctctttccaac 33703082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 1302590 - 1302667
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctttccaac 81  Q
    |||||||||| ||||||||||||||||||||| | |||||||| ||||||||||||||| ||  |||||||| |||||    
T  1302590 gcaaccccatacgctttgagttttacatgcatgatcattaaacatttcaggtttcaagtgcagcagcctcttcccaac 1302667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 5458357 - 5458434
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctttccaac 81  Q
    |||||||||| ||||||||||||||||||||| | |||||||| ||||||||||||||| ||  |||||||| |||||    
T  5458357 gcaaccccatacgctttgagttttacatgcatgatcattaaacatttcaggtttcaagtgcagcagcctcttcccaac 5458434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 5481833 - 5481910
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctttccaac 81  Q
    |||||||||| ||||||||||||||||||||| | |||||||| ||||||||||||||| ||  |||||||| |||||    
T  5481833 gcaaccccatacgctttgagttttacatgcatgatcattaaacatttcaggtttcaagtgcagcagcctcttcccaac 5481910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 6853297 - 6853374
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctttccaac 81  Q
    |||||||||| ||||||||||||||||||||| | |||||||| ||||||||||||||| ||  |||||||| |||||    
T  6853297 gcaaccccatacgctttgagttttacatgcatgatcattaaacatttcaggtttcaagtgcagcagcctcttcccaac 6853374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 8458170 - 8458093
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctttccaac 81  Q
    |||||||||| ||||||||||||||||||||| | |||||||| ||||||||||||||| ||  |||||||| |||||    
T  8458170 gcaaccccatacgctttgagttttacatgcatgatcattaaacatttcaggtttcaagtgcagcagcctcttcccaac 8458093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 8464609 - 8464532
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctttccaac 81  Q
    |||||||||| ||||||||||||||||||||| | |||||||| ||||||||||||||| ||  |||||||| |||||    
T  8464609 gcaaccccatacgctttgagttttacatgcatgatcattaaacatttcaggtttcaagtgcagcagcctcttcccaac 8464532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 10591640 - 10591717
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctttccaac 81  Q
    |||||||||| ||||||||||||||||||||| | |||||||| ||||||||||||||| ||  |||||||| |||||    
T  10591640 gcaaccccatacgctttgagttttacatgcatgatcattaaacatttcaggtttcaagtgcagcagcctcttcccaac 10591717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 10673283 - 10673360
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctttccaac 81  Q
    |||||||||| ||||||||||||||||||||| | |||||||| ||||||||||||||| ||  |||||||| |||||    
T  10673283 gcaaccccatacgctttgagttttacatgcatgatcattaaacatttcaggtttcaagtgcagcagcctcttcccaac 10673360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 10678398 - 10678475
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctttccaac 81  Q
    |||||||||| ||||||||||||||||||||| | |||||||| ||||||||||||||| ||  |||||||| |||||    
T  10678398 gcaaccccatacgctttgagttttacatgcatgatcattaaacatttcaggtttcaagtgcagcagcctcttcccaac 10678475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 31076747 - 31076824
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctttccaac 81  Q
    |||||||||| ||||||||||||||||||||| | |||||||| ||||||||||||||| ||  |||||||| |||||    
T  31076747 gcaaccccatacgctttgagttttacatgcatgatcattaaacatttcaggtttcaagtgcagcagcctcttcccaac 31076824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 33702945 - 33703022
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctttccaac 81  Q
    |||||||||| ||||||||||||||||||||| | |||||||| ||||||||||||||| ||  |||||||| |||||    
T  33702945 gcaaccccatacgctttgagttttacatgcatgatcattaaacatttcaggtttcaagtgcagcagcctcttcccaac 33703022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 6858400 - 6858458
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagt 62  Q
    |||||||||| ||||||||||||||||||||| | |||||||| |||||||||||||||    
T  6858400 gcaaccccatacgctttgagttttacatgcatgatcattaaacatttcaggtttcaagt 6858458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 50
Target Start/End: Complemental strand, 20890920 - 20890874
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaactttt 50  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  20890920 gcaaccccatacgctttgagttttacatgcataaccattaaactttt 20890874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 4049666 - 4049589
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctttccaac 81  Q
    |||||||||| ||||||||||||||||||||| | |||||||  ||||||||||||||| ||  |||||||| |||||    
T  4049666 gcaaccccatacgctttgagttttacatgcatgatcattaaatatttcaggtttcaagtgcagcagcctcttcccaac 4049589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 4054800 - 4054723
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctttccaac 81  Q
    |||||||||| ||||||||||||||||||||| | |||||||| || |||||||||||| ||  |||||||| |||||    
T  4054800 gcaaccccatacgctttgagttttacatgcatgatcattaaacattccaggtttcaagtgcagcagcctcttcccaac 4054723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 10586527 - 10586604
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctttccaac 81  Q
    |||||| ||| ||||||||||||||||||||| | |||||||| ||||||||||||||| ||  |||||||| |||||    
T  10586527 gcaacctcatacgctttgagttttacatgcatgatcattaaacatttcaggtttcaagtgcagcagcctcttcccaac 10586604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 31081852 - 31081929
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctttccaac 81  Q
    |||||||||| ||||||||||||||||||||| | |||||||| ||| ||||||||||| ||  |||||||| |||||    
T  31081852 gcaaccccatacgctttgagttttacatgcatgatcattaaacattttaggtttcaagtgcagcagcctcttcccaac 31081929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 167
Target Start/End: Complemental strand, 49784250 - 49784164
Alignment:
Q  82 gaatttaagtgcacactt-catcatatacatctttatcatctttttaatcaagttattgtagcagacctccaacacaaattctaaca 167  Q
    ||||||| |||||||||| ||||| || ||| || |||||||| ||  ||||||||||| |||||||| ||||||||||||| ||||    
T  49784250 gaatttatgtgcacactttcatcacattcatgttcatcatcttcttcgtcaagttattgcagcagacccccaacacaaattccaaca 49784164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 139
Target Start/End: Original strand, 52653994 - 52654051
Alignment:
Q  82 gaatttaagtgcacacttcatcatatacatctttatcatctttttaatcaagttattg 139  Q
    ||||||| |||||||||||||||| | ||| || |||||||| || ||||||||||||    
T  52653994 gaatttatgtgcacacttcatcatgttcattttcatcatcttcttgatcaagttattg 52654051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 16466 - 16389
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctttccaac 81  Q
    |||||||||| ||||||||||||||||||||| | |||||||| ||||||||||||||| ||  |||||||| |||||    
T  16466 gcaaccccatacgctttgagttttacatgcatgatcattaaacatttcaggtttcaagtgcagcagcctcttcccaac 16389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 81
Target Start/End: Complemental strand, 16366 - 16294
Alignment:
Q  9 cccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctttccaac 81  Q
    ||||| ||||||||||||||||||||| | |||||||| ||||||||||||||| ||  |||||||| |||||    
T  16366 cccatacgctttgagttttacatgcatgatcattaaacatttcaggtttcaagtgcagcagcctcttcccaac 16294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 143955 - 143878
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctttccaac 81  Q
    ||||||||||||||||||| |||||||||| ||| |||||||| ||||||||||||||| ||  |||||||| |||||    
T  143955 gcaaccccatgcgctttgaattttacatgcgtaagcattaaacatttcaggtttcaagtgcagcagcctcttcccaac 143878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 170675 - 170619
Alignment:
Q  6 aaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagt 62  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||    
T  170675 aaccccatgagctttaagttttacatgcataaccattaaacttttcagatttcaagt 170619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0756 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0756
Description:

Target: scaffold0756; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 4004 - 3933
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaacttttcaggtttcaagtacaatagcctctt 75  Q
    |||||||||| ||||||||||||||||||||| | |||||||| ||||||||||||||| ||  ||||||||    
T  4004 gcaaccccatacgctttgagttttacatgcatgatcattaaacatttcaggtttcaagtgcagcagcctctt 3933  T

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Target: scaffold0223 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 7322 - 7363
Alignment:
Q  4 gcaaccccatgcgctttgagttttacatgcataaccattaaa 45  Q
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T  7322 gcaaccccatacgctttgagttttacatgcatgatcattaaa 7363  T

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