View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18031_low_16 (Length: 236)

Name: NF18031_low_16
Description: NF18031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18031_low_16
NF18031_low_16
[»] chr5 (36 HSPs)
chr5 (81-227)||(1840969-1841115)
chr5 (79-207)||(3805385-3805513)
chr5 (79-236)||(10493379-10493531)
chr5 (79-219)||(32157385-32157525)
chr5 (79-219)||(18879620-18879760)
chr5 (78-228)||(26217422-26217572)
chr5 (79-228)||(11136654-11136803)
chr5 (107-228)||(4983956-4984077)
chr5 (79-236)||(19283568-19283724)
chr5 (78-219)||(27905479-27905620)
chr5 (79-219)||(34720063-34720203)
chr5 (79-228)||(5385080-5385229)
chr5 (78-219)||(27450990-27451131)
chr5 (79-208)||(34724050-34724179)
chr5 (79-207)||(34856946-34857074)
chr5 (124-228)||(41782739-41782843)
chr5 (16-79)||(7037578-7037641)
chr5 (78-219)||(26299445-26299586)
chr5 (124-228)||(28430594-28430699)
chr5 (78-154)||(29322062-29322138)
chr5 (78-228)||(27195427-27195572)
chr5 (109-219)||(39408749-39408859)
chr5 (79-219)||(43385798-43385939)
chr5 (79-219)||(26297905-26298045)
chr5 (106-219)||(19715800-19715912)
chr5 (79-228)||(14501345-14501486)
chr5 (79-219)||(20188350-20188490)
chr5 (79-134)||(38523335-38523390)
chr5 (130-219)||(39407032-39407121)
chr5 (82-208)||(1224567-1224693)
chr5 (82-219)||(2675305-2675441)
chr5 (157-236)||(13937236-13937315)
chr5 (137-236)||(28242443-28242542)
chr5 (79-153)||(22921438-22921512)
chr5 (162-219)||(29322134-29322191)
chr5 (163-219)||(38523257-38523313)
[»] chr1 (39 HSPs)
chr1 (79-226)||(29678097-29678244)
chr1 (79-219)||(37441813-37441958)
chr1 (79-228)||(24575300-24575449)
chr1 (79-200)||(38061638-38061759)
chr1 (79-228)||(43090023-43090167)
chr1 (78-208)||(32179332-32179462)
chr1 (82-228)||(44595832-44595972)
chr1 (79-236)||(7955649-7955806)
chr1 (82-219)||(36418523-36418660)
chr1 (78-165)||(47603463-47603550)
chr1 (79-228)||(5205100-5205250)
chr1 (106-236)||(15257829-15257959)
chr1 (80-219)||(35309009-35309144)
chr1 (106-219)||(7994773-7994885)
chr1 (79-216)||(45654370-45654507)
chr1 (79-171)||(28005735-28005827)
chr1 (79-154)||(24470579-24470654)
chr1 (79-214)||(45582104-45582239)
chr1 (113-228)||(31868923-31869038)
chr1 (121-226)||(13645709-13645814)
chr1 (78-214)||(7595719-7595855)
chr1 (78-228)||(36118229-36118373)
chr1 (137-226)||(3576996-3577085)
chr1 (126-226)||(30211809-30211909)
chr1 (78-214)||(48575741-48575877)
chr1 (146-236)||(15305949-15306039)
chr1 (78-219)||(46265608-46265747)
chr1 (162-219)||(24470526-24470583)
chr1 (78-142)||(14579108-14579172)
chr1 (79-214)||(40002320-40002455)
chr1 (79-122)||(42936495-42936538)
chr1 (124-226)||(18349775-18349877)
chr1 (162-208)||(38061601-38061647)
chr1 (77-134)||(19507936-19507993)
chr1 (79-208)||(21681633-21681762)
chr1 (78-119)||(35810109-35810150)
chr1 (78-214)||(14770868-14771004)
chr1 (82-142)||(23916134-23916194)
chr1 (144-236)||(47982726-47982817)
[»] chr4 (43 HSPs)
chr4 (78-228)||(52705592-52705742)
chr4 (79-219)||(19850132-19850272)
chr4 (86-219)||(50605462-50605595)
chr4 (79-219)||(21436307-21436447)
chr4 (79-219)||(49820378-49820518)
chr4 (79-219)||(53369062-53369202)
chr4 (79-219)||(9469428-9469567)
chr4 (79-236)||(43386534-43386691)
chr4 (79-208)||(48977004-48977133)
chr4 (79-207)||(25133933-25134061)
chr4 (97-214)||(51409119-51409236)
chr4 (79-179)||(79760-79860)
chr4 (79-219)||(22183763-22183903)
chr4 (78-236)||(12673650-12673809)
chr4 (79-154)||(44792846-44792921)
chr4 (79-166)||(52812967-52813054)
chr4 (78-236)||(28266727-28266880)
chr4 (106-208)||(46945186-46945288)
chr4 (79-208)||(51994083-51994212)
chr4 (81-168)||(7505426-7505513)
chr4 (78-225)||(44377614-44377751)
chr4 (79-236)||(40797154-40797311)
chr4 (79-213)||(55892684-55892811)
chr4 (107-214)||(1803195-1803302)
chr4 (79-154)||(12790211-12790286)
chr4 (78-205)||(50240908-50241035)
chr4 (85-151)||(45674310-45674376)
chr4 (124-232)||(16743106-16743214)
chr4 (131-219)||(24009430-24009518)
chr4 (124-236)||(50711424-50711536)
chr4 (78-219)||(4275542-4275683)
chr4 (82-171)||(22720747-22720836)
chr4 (86-171)||(38493652-38493737)
chr4 (79-128)||(49378183-49378232)
chr4 (125-228)||(35778525-35778625)
chr4 (124-228)||(48151728-48151832)
chr4 (125-236)||(52813045-52813156)
chr4 (79-228)||(11055829-11055973)
chr4 (157-236)||(9222770-9222849)
chr4 (79-134)||(36543314-36543369)
chr4 (79-142)||(50147424-50147487)
chr4 (137-179)||(5769796-5769838)
chr4 (150-219)||(36543365-36543434)
[»] chr3 (28 HSPs)
chr3 (79-228)||(5418043-5418192)
chr3 (79-219)||(39471079-39471219)
chr3 (79-220)||(30740732-30740873)
chr3 (79-236)||(25252874-25253031)
chr3 (79-219)||(33895916-33896056)
chr3 (79-214)||(52198776-52198911)
chr3 (82-219)||(38644225-38644361)
chr3 (87-219)||(32688567-32688699)
chr3 (78-172)||(39133777-39133871)
chr3 (79-200)||(20407769-20407890)
chr3 (76-208)||(46294248-46294380)
chr3 (81-236)||(40942902-40943051)
chr3 (79-154)||(41609314-41609389)
chr3 (79-219)||(7029135-7029274)
chr3 (157-236)||(54432874-54432953)
chr3 (115-228)||(12710096-12710209)
chr3 (79-214)||(27040549-27040684)
chr3 (124-236)||(19561390-19561502)
chr3 (79-127)||(23206992-23207040)
chr3 (131-227)||(51067744-51067840)
chr3 (79-198)||(7521761-7521875)
chr3 (79-214)||(30662768-30662898)
chr3 (79-180)||(52934231-52934327)
chr3 (124-208)||(15823191-15823275)
chr3 (78-122)||(54394138-54394182)
chr3 (157-208)||(41609380-41609431)
chr3 (158-228)||(26050123-26050195)
chr3 (138-227)||(33152050-33152139)
[»] chr6 (14 HSPs)
chr6 (79-219)||(10346212-10346352)
chr6 (78-219)||(7957053-7957194)
chr6 (73-225)||(7436694-7436845)
chr6 (92-227)||(33109845-33109980)
chr6 (82-236)||(3082314-3082468)
chr6 (78-172)||(6998575-6998669)
chr6 (83-219)||(18961849-18961985)
chr6 (130-228)||(9463687-9463784)
chr6 (124-236)||(12428088-12428200)
chr6 (106-228)||(22295383-22295505)
chr6 (79-172)||(4442042-4442135)
chr6 (111-236)||(13311380-13311505)
chr6 (80-123)||(9951486-9951529)
chr6 (79-219)||(472826-472966)
[»] chr2 (24 HSPs)
chr2 (79-219)||(20986064-20986204)
chr2 (79-219)||(36538077-36538217)
chr2 (78-228)||(2647591-2647741)
chr2 (79-219)||(27633142-27633282)
chr2 (130-228)||(3409840-3409938)
chr2 (107-219)||(12139394-12139506)
chr2 (79-219)||(44741296-44741436)
chr2 (79-219)||(41958542-41958687)
chr2 (79-154)||(33830890-33830965)
chr2 (78-228)||(18667124-18667272)
chr2 (82-228)||(26435770-26435916)
chr2 (114-208)||(39801156-39801250)
chr2 (131-228)||(40675217-40675314)
chr2 (79-208)||(29804266-29804392)
chr2 (145-236)||(40458398-40458489)
chr2 (80-154)||(33164617-33164691)
chr2 (78-219)||(11027286-11027427)
chr2 (79-134)||(1093914-1093969)
chr2 (78-204)||(41648742-41648868)
chr2 (158-214)||(1093961-1094017)
chr2 (82-128)||(30711471-30711517)
chr2 (162-228)||(33830961-33831027)
chr2 (78-179)||(29478042-29478143)
chr2 (79-119)||(34116854-34116894)
[»] chr7 (41 HSPs)
chr7 (78-208)||(5776576-5776706)
chr7 (83-219)||(26215721-26215857)
chr7 (79-204)||(36926409-36926534)
chr7 (79-219)||(37333697-37333838)
chr7 (79-236)||(42071520-42071677)
chr7 (79-219)||(43052282-43052422)
chr7 (79-236)||(17025980-17026138)
chr7 (79-219)||(666216-666356)
chr7 (85-219)||(3931348-3931483)
chr7 (106-228)||(45054820-45054942)
chr7 (79-208)||(7443829-7443958)
chr7 (79-219)||(7539651-7539791)
chr7 (77-228)||(41449150-41449296)
chr7 (79-228)||(23236773-23236917)
chr7 (78-226)||(10618025-10618168)
chr7 (79-236)||(33899588-33899740)
chr7 (79-200)||(49035084-49035205)
chr7 (79-154)||(45174637-45174712)
chr7 (130-236)||(22074612-22074718)
chr7 (79-208)||(222954-223083)
chr7 (116-236)||(18250629-18250749)
chr7 (79-227)||(30918930-30919078)
chr7 (124-228)||(33124138-33124237)
chr7 (79-154)||(388427-388502)
chr7 (79-154)||(5795559-5795634)
chr7 (79-154)||(15433629-15433704)
chr7 (112-228)||(8390129-8390245)
chr7 (124-227)||(48633289-48633392)
chr7 (78-154)||(28950359-28950434)
chr7 (161-228)||(11596423-11596490)
chr7 (83-142)||(37106150-37106209)
chr7 (157-236)||(26719220-26719299)
chr7 (82-228)||(18740850-18740991)
chr7 (124-226)||(36471849-36471950)
chr7 (162-219)||(388498-388555)
chr7 (78-219)||(17608027-17608168)
chr7 (79-196)||(20259953-20260070)
chr7 (162-214)||(15433700-15433752)
chr7 (79-119)||(27232483-27232523)
chr7 (78-142)||(42012255-42012319)
chr7 (78-118)||(46574319-46574359)
[»] chr8 (14 HSPs)
chr8 (79-219)||(9413264-9413404)
chr8 (79-228)||(43966887-43967031)
chr8 (79-219)||(11161078-11161218)
chr8 (85-219)||(25731854-25731983)
chr8 (79-199)||(22930869-22930984)
chr8 (98-208)||(22563277-22563387)
chr8 (106-228)||(12377748-12377870)
chr8 (157-227)||(24854057-24854127)
chr8 (85-142)||(33280715-33280772)
chr8 (79-236)||(39477423-39477574)
chr8 (79-204)||(27189569-27189693)
chr8 (79-179)||(32740279-32740379)
chr8 (116-172)||(17865721-17865777)
chr8 (79-119)||(34515555-34515595)
[»] scaffold0316 (1 HSPs)
scaffold0316 (79-219)||(18710-18850)
[»] scaffold0106 (1 HSPs)
scaffold0106 (81-179)||(26495-26593)
[»] scaffold0444 (1 HSPs)
scaffold0444 (78-225)||(1407-1544)
[»] scaffold0043 (1 HSPs)
scaffold0043 (78-208)||(16491-16620)
[»] scaffold0658 (1 HSPs)
scaffold0658 (79-179)||(6433-6533)
[»] scaffold0025 (1 HSPs)
scaffold0025 (146-214)||(4745-4813)
[»] scaffold0135 (1 HSPs)
scaffold0135 (157-236)||(33423-33502)


Alignment Details
Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 36)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 81 - 227
Target Start/End: Complemental strand, 1841115 - 1840969
Alignment:
Q  81 gggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaacc 180  Q
    |||||||||||||||| ||||||||| |||||||||||| ||| |||| |||||| |||||| ||||||||||||| |||||||||||||||||||||||    
T  1841115 gggctggaaatgagtcgagtcgaaccaaacctgtctgagctcgactcgactcgataagaattggttcggctcgaaactcgactcgagttcgatacgaacc 1841016  T
Q  181 tttgttttagctcgagttcggctcgttttaagtttacgagcaactcg 227  Q
     || ||||| |||||||||||||||||| ||||| |||| |||||||    
T  1841015 ctttttttaactcgagttcggctcgtttaaagttcacgaacaactcg 1840969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 79 - 207
Target Start/End: Complemental strand, 3805513 - 3805385
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||||| |||||| |||||| ||||||||||||| ||| ||||||||||| |||||    
T  3805513 tagggctggaaatgagtcgagtcgaaccgaacctgtctgagctcggctcgactcgataagaattggttcggctcgaaactcggctcgagttcgacacgaa 3805414  T
Q  179 cctttgttttagctcgagttcggctcgtt 207  Q
    |  || ||| ||||||||||| |||||||    
T  3805413 ctattttttcagctcgagttcagctcgtt 3805385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 79 - 236
Target Start/End: Original strand, 10493379 - 10493531
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    |||||||||||||||||| ||||||| ||||||||||||||     |||| |||||| |||| | ||||||||||||| ||||||||||||||| |||||    
T  10493379 tagggctggaaatgagtcgagtcgaatcgaacctgtctgag-----ctcgactcgataagaaatggttcggctcgaaactcgactcgagttcgaaacgaa 10493473  T
Q  179 cctttgttttagctcgagttcggctcgttttaagtttacgagcaactcggctcgactc 236  Q
    ||||| ||| | ||| |||||||||||||| ||||| ||||||||||||  |||||||    
T  10493474 cctttttttcaactcaagttcggctcgtttaaagttcacgagcaactcgattcgactc 10493531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 79 - 219
Target Start/End: Complemental strand, 32157525 - 32157385
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    |||||||||||||||||| |||||||| ||||||||||| | |||||||| |||||| |||||| ||||||||||||| | | ||||||||||| |||||    
T  32157525 tagggctggaaatgagtcgagtcgaactgaacctgtctgggctcggctcgactcgataagaattggttcggctcgaaacttggctcgagttcgacacgaa 32157426  T
Q  179 cctttgttttagctcgagttcggctcgttttaagtttacga 219  Q
    |  || ||| |||||||||||||||||||| ||||| ||||    
T  32157425 ctattttttcagctcgagttcggctcgtttaaagttcacga 32157385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 79 - 219
Target Start/End: Original strand, 18879620 - 18879760
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    |||| ||| ||||||||| |||||||||||| |||||||||||||||||| |||||| |||||| ||||||||||||| | | ||||||||||| |||||    
T  18879620 taggactgaaaatgagtcgagtcgaaccgaatctgtctgagttcggctcgactcgataagaattggttcggctcgaaacttggctcgagttcgacacgaa 18879719  T
Q  179 cctttgttttagctcgagttcggctcgttttaagtttacga 219  Q
    |  || ||| |||||||||||||||| ||| ||||| ||||    
T  18879720 ctattttttcagctcgagttcggctcatttaaagttcacga 18879760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 78 - 228
Target Start/End: Original strand, 26217422 - 26217572
Alignment:
Q  78 ttagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacga 177  Q
    |||||| |||||||||||| ||||||  ||||| |||||||| |||| ||| ||| || |||||| ||||||||||||| ||||||||||||| | ||||    
T  26217422 ttagggttggaaatgagtcgagtcgagtcgaacttgtctgagctcggttcgactcaataagaattggttcggctcgaaactcgactcgagttcaaaacga 26217521  T
Q  178 acctttgttttagctcgagttcggctcgttttaagtttacgagcaactcgg 228  Q
    |||||| |||  |||| |||||||||||||| ||||| ||||| |||||||    
T  26217522 acctttttttgggctccagttcggctcgtttaaagttcacgagaaactcgg 26217572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 79 - 228
Target Start/End: Complemental strand, 11136803 - 11136654
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    |||||||||||||||||| ||||||  ||||| |||||||  ||||||||  ||||| |||||  ||||||||||||| ||||||||||||| | |||||    
T  11136803 tagggctggaaatgagtcgagtcgagtcgaacttgtctgaactcggctcgattcgataagaataggttcggctcgaaactcgactcgagttcaaaacgaa 11136704  T
Q  179 cctttgttttagctcgagttcggctcgttttaagtttacgagcaactcgg 228  Q
    ||||| |||  ||||||| |||| |||||| ||||| |||||||||||||    
T  11136703 cctttttttgggctcgagctcggttcgtttaaagttcacgagcaactcgg 11136654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 107 - 228
Target Start/End: Complemental strand, 4984077 - 4983956
Alignment:
Q  107 gaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaacctttgttttagctcgagttcggctcgt 206  Q
    |||| |||||||| |||||||| |||||| |||||| |||| ||| |||| ||||||||||||| | |||||||||| |||  |||||||||||||||||    
T  4984077 gaacttgtctgagctcggctcgactcgataagaattggttcagcttgaaactcgactcgagttcaaaacgaacctttttttgggctcgagttcggctcgt 4983978  T
Q  207 tttaagtttacgagcaactcgg 228  Q
    || ||||| |||||||||||||    
T  4983977 ttaaagttcacgagcaactcgg 4983956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 79 - 236
Target Start/End: Complemental strand, 19283724 - 19283568
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    |||||||||||||||||| ||| ||| ||||| | |||||| ||| |||| |||||| |||||| |||  |||||||| |||||||||||||||||||||    
T  19283724 tagggctggaaatgagtcgagtagaatcgaacttatctgagctcgactcgactcgataagaattggtttagctcgaaactcgactcgagttcgatacgaa 19283625  T
Q  179 cctttgttttagctcgagttcggctcgttttaagtttacgagcaactcggctcgactc 236  Q
    ||||| ||||| |||||||||  ||  ||| ||||| |||| |||||||| |||||||    
T  19283624 ccttt-ttttaactcgagttctactgatttaaagttcacgaacaactcggttcgactc 19283568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 78 - 219
Target Start/End: Original strand, 27905479 - 27905620
Alignment:
Q  78 ttagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacga 177  Q
    ||||||||||||||||||| ||||||||||||| | |||||| |||||||| || ||| |||||| ||||||| ||||| ||| ||||||||||| ||||    
T  27905479 ttagggctggaaatgagtcgagtcgaaccgaacttatctgagctcggctcgacttgataagaattggttcggcacgaaactcggctcgagttcgacacga 27905578  T
Q  178 acctttgttttagctcgagttcggctcgttttaagtttacga 219  Q
    ||  || ||| ||| ||| |||||||||||| ||||| ||||    
T  27905579 actattttttcagcccgaattcggctcgtttaaagttcacga 27905620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 79 - 219
Target Start/End: Complemental strand, 34720203 - 34720063
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    |||||||||||||||||| ||||||  |||||||||| ||| |||  ||| |||||| |||||| |||||| |||||| |||||||||||||||  ||||    
T  34720203 tagggctggaaatgagtcgagtcgagtcgaacctgtccgagctcgattcgactcgataagaattggttcggttcgaaactcgactcgagttcgaagcgaa 34720104  T
Q  179 cctttgttttagctcgagttcggctcgttttaagtttacga 219  Q
    | ||| ||| ||||||||||| |||||||| ||||| ||||    
T  34720103 cttttttttaagctcgagttcagctcgtttaaagttcacga 34720063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 79 - 228
Target Start/End: Complemental strand, 5385229 - 5385080
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    |||||||||||||||||| ||||||| ||||| | |||||| |||  |||  ||||||| |||| ||||||||||||| | ||||||||||| | |||||    
T  5385229 tagggctggaaatgagtcgagtcgaatcgaacttttctgagctcgattcgattcgattaaaatttgttcggctcgaaacttgactcgagttcaacacgaa 5385130  T
Q  179 cctttgttttagctcgagttcggctcgttttaagtttacgagcaactcgg 228  Q
    |  || |||||||||||||||| ||||||| ||||| |||| ||| ||||    
T  5385129 ctctttttttagctcgagttcgactcgtttaaagttcacgaacaattcgg 5385080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 78 - 219
Target Start/End: Complemental strand, 27451131 - 27450990
Alignment:
Q  78 ttagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacga 177  Q
    |||||| |||||||||||| ||||||  | |||||||||||| |||  ||| |||||| |||||| ||||||||||||| || ||||||||||||  |||    
T  27451131 ttagggttggaaatgagtcgagtcgagtcaaacctgtctgagctcgattcgactcgataagaattggttcggctcgaaactcaactcgagttcgaagcga 27451032  T
Q  178 acctttgttttagctcgagttcggctcgttttaagtttacga 219  Q
    || ||| ||| | |||||||||||||||||| ||||| ||||    
T  27451031 acatttttttaaactcgagttcggctcgtttaaagttcacga 27450990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 79 - 208
Target Start/End: Complemental strand, 34724179 - 34724050
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    |||||||||||||||||| ||||||  |||||||||| ||| |||  ||| |||||| |||||| |||| | |||||| |||||||||||||||  ||||    
T  34724179 tagggctggaaatgagtcgagtcgagtcgaacctgtccgagctcgattcgactcgataagaattggttcagttcgaaactcgactcgagttcgaagcgaa 34724080  T
Q  179 cctttgttttagctcgagttcggctcgttt 208  Q
    ||||| ||| ||||||||||| ||||||||    
T  34724079 cctttttttaagctcgagttcagctcgttt 34724050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 79 - 207
Target Start/End: Original strand, 34856946 - 34857074
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    |||| ||||||||||||| ||||||  |||| |||||||||||||  ||| |||||| |||||| ||||||||||||| | |||||||||||||  ||||    
T  34856946 taggactggaaatgagtcgagtcgagtcgaatctgtctgagttcgattcgactcgataagaattggttcggctcgaaacttgactcgagttcgaagcgaa 34857045  T
Q  179 cctttgttttagctcgagttcggctcgtt 207  Q
    | ||| ||| || ||||||||||||||||    
T  34857046 catttttttaagttcgagttcggctcgtt 34857074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 124 - 228
Target Start/End: Original strand, 41782739 - 41782843
Alignment:
Q  124 gctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaacctttgttttagctcgagttcggctcgttttaagtttacgagcaa 223  Q
    |||||| | ||| |||||| ||||||||||||| ||||||||||||| | |||||||||| |||  ||||||||||||||||||| ||||| ||||||||    
T  41782739 gctcggtttgataagaattggttcggctcgaaactcgactcgagttcaaaacgaacctttttttgggctcgagttcggctcgtttaaagttcacgagcaa 41782838  T
Q  224 ctcgg 228  Q
    |||||    
T  41782839 ctcgg 41782843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 7037641 - 7037578
Alignment:
Q  16 gttcttgttgtggctcatgcacaagctctagtcgtggtgcatcgggtttgcctctcctagcttt 79  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  7037641 gttctagttgtggctcatgcacaagctctagtcgtggtgcatctggtttgcctctcctagcttt 7037578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 78 - 219
Target Start/End: Original strand, 26299445 - 26299586
Alignment:
Q  78 ttagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacga 177  Q
    |||||| || ||||||||| ||||||  | ||| |||||||| |||  ||| |||||| |||||| ||||||||||||| |||||||||||||||   ||    
T  26299445 ttagggttgaaaatgagtcgagtcgagtcaaacttgtctgagctcgattcgactcgataagaattggttcggctcgaaactcgactcgagttcgaagtga 26299544  T
Q  178 acctttgttttagctcgagttcggctcgttttaagtttacga 219  Q
    |||||| ||| | |||||||||||||||||| ||||| ||||    
T  26299545 acctttttttaaactcgagttcggctcgtttaaagttcacga 26299586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 124 - 228
Target Start/End: Original strand, 28430594 - 28430699
Alignment:
Q  124 gctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaacc-tttgttttagctcgagttcggctcgttttaagtttacgagca 222  Q
    ||||| |||||| ||||||||||| |||| ||| ||||||||||||||||||||||| ||| |||||  ||||||||||||||||| ||||| |||| ||    
T  28430594 gctcgactcgataagaattagttcagctcaaaactcgactcgagttcgatacgaaccttttcttttaattcgagttcggctcgtttaaagttaacgaaca 28430693  T
Q  223 actcgg 228  Q
    ||||||    
T  28430694 actcgg 28430699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 78 - 154
Target Start/End: Original strand, 29322062 - 29322138
Alignment:
Q  78 ttagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcga 154  Q
    ||||||||||||||||||| |||||||||||||||| ||||| |||||||| |||||| |||||| |||||||||||    
T  29322062 ttagggctggaaatgagtcgagtcgaaccgaacctgcctgagctcggctcgactcgataagaattggttcggctcga 29322138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 78 - 228
Target Start/End: Original strand, 27195427 - 27195572
Alignment:
Q  78 ttagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacga 177  Q
    ||||||||||||||||||| ||||||||      |||||||| ||| |||| ||| || |||||| ||||||||||||| || ||||||||| || ||||    
T  27195427 ttagggctggaaatgagtcgagtcgaaca-----tgtctgagctcgactcgactcaataagaattggttcggctcgaaactctactcgagtttgaaacga 27195521  T
Q  178 acctttgttttagctcgagttcggctcgttttaagtttacgagcaactcgg 228  Q
    ||||||  | || |||||||||||||||||| ||||| |||| || |||||    
T  27195522 accttttctctaactcgagttcggctcgtttaaagttcacgaacagctcgg 27195572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 109 - 219
Target Start/End: Original strand, 39408749 - 39408859
Alignment:
Q  109 acctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaacctttgttttagctcgagttcggctcgttt 208  Q
    ||||||| ||| |||  ||| |||||| |||||| ||||||||||||| |||||||||||||||  ||||| ||| ||| ||||||||||||||||||||    
T  39408749 acctgtccgagctcgattcgactcgataagaattggttcggctcgaaactcgactcgagttcgaagcgaacttttttttaagctcgagttcggctcgttt 39408848  T
Q  209 taagtttacga 219  Q
     ||||| ||||    
T  39408849 aaagttcacga 39408859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 79 - 219
Target Start/End: Original strand, 43385798 - 43385939
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    |||||||||||||| | | ||||||  |||||  ||||||| |||||||| |||||| |||||| |||| |||||||| ||| ||||||||||| || ||    
T  43385798 tagggctggaaatgtgccgagtcgagtcgaactcgtctgagctcggctcgactcgataagaattggttcagctcgaaactcggctcgagttcgacacaaa 43385897  T
Q  179 cctttgtttt-agctcgagttcggctcgttttaagtttacga 219  Q
    | ||| |||| |||| ||||||||||||||| ||||| ||||    
T  43385898 ctttttttttcagcttgagttcggctcgtttaaagttcacga 43385939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 79 - 219
Target Start/End: Original strand, 26297905 - 26298045
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    |||||||| ||||||||| | || |  | ||||||| |||| |||  ||| |||||| |||||| ||||||||||||| |||| ||||||||||  ||||    
T  26297905 tagggctgaaaatgagtcgaatcaagtcaaacctgtgtgagctcgattcgactcgataagaattggttcggctcgaaactcgattcgagttcgaagcgaa 26298004  T
Q  179 cctttgttttagctcgagttcggctcgttttaagtttacga 219  Q
    ||||| ||| | |||||||||||||||||| ||||| ||||    
T  26298005 cctttttttaaactcgagttcggctcgtttaaagttcacga 26298045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 106 - 219
Target Start/End: Original strand, 19715800 - 19715912
Alignment:
Q  106 cgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaacctttgttttagctcgagttcggctcg 205  Q
    ||||| |||||||| |||  ||| |||||| | |||| ||||||||||||| |||||||||||||||  ||||||||| ||| | |||||||||||||||    
T  19715800 cgaacttgtctgagctcgattcgactcgataataattggttcggctcgaaactcgactcgagttcgaagcgaaccttt-tttaaactcgagttcggctcg 19715898  T
Q  206 ttttaagtttacga 219  Q
    ||| ||||| ||||    
T  19715899 tttaaagttcacga 19715912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 79 - 228
Target Start/End: Complemental strand, 14501486 - 14501345
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    ||||| ||||||||||||  |||||  ||||  |||||||| |||||||| |||||| |||||  ||||||||||||| ||||||||||        | |    
T  14501486 tagggttggaaatgagtcgcgtcgagtcgaatttgtctgagctcggctcgactcgataagaatcggttcggctcgaaactcgactcgag--------gga 14501395  T
Q  179 cctttgttttagctcgagttcggctcgttttaagtttacgagcaactcgg 228  Q
    ||||| |||  ||||||||||||||||||| ||||| |||||||||||||    
T  14501394 cctttttttgggctcgagttcggctcgtttaaagttcacgagcaactcgg 14501345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 79 - 219
Target Start/End: Original strand, 20188350 - 20188490
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    |||||||||||||||||||||||||| ||||| |||||||||||| |||| |||  | |||||| |||||| |||||  |||  ||||||| || |||||    
T  20188350 tagggctggaaatgagtcaagtcgaatcgaacttgtctgagttcgactcgactcattaagaatttgttcggttcgaatctcggatcgagtttgacacgaa 20188449  T
Q  179 cctttgttttagctcgagttcggctcgttttaagtttacga 219  Q
    | ||| ||  | ||| ||||| |||||||| ||||| ||||    
T  20188450 ctttttttccaactcaagttccgctcgtttaaagttcacga 20188490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 79 - 134
Target Start/End: Complemental strand, 38523390 - 38523335
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcga 134  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||||| |||||    
T  38523390 tagggctggaaatgagtcgagtcgaaccgaacctgtctgagctcggctcgactcga 38523335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 130 - 219
Target Start/End: Original strand, 39407032 - 39407121
Alignment:
Q  130 ctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaacctttgttttagctcgagttcggctcgttttaagtttacga 219  Q
    |||||| |||||| |||||| |||||| |||||||||||||||   |||| ||| ||| |||||||||||||||||||| ||||| ||||    
T  39407032 ctcgataagaattggttcggttcgaaactcgactcgagttcgaagtgaacttttttttaagctcgagttcggctcgtttaaagttcacga 39407121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 82 - 208
Target Start/End: Original strand, 1224567 - 1224693
Alignment:
Q  82 ggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaacct 181  Q
    ||||| ||||||||| | ||||| ||||||||||| || |||||||| ||| || ||| || | ||| ||||||| ||||||||||||||| ||||||      
T  1224567 ggctgaaaatgagtcgaatcgaatcgaacctgtctaagctcggctcgactcaataagattttgctcgactcgaaactcgactcgagttcgacacgaactc 1224666  T
Q  182 ttgttttagctcgagttcggctcgttt 208  Q
    ||  ||  ||||||||||| |||||||    
T  1224667 tttattccgctcgagttcgactcgttt 1224693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 219
Target Start/End: Original strand, 2675305 - 2675441
Alignment:
Q  82 ggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaacct 181  Q
    ||||||||||||| | ||||||| ||||| ||||| |||||| ||||  ||| | |||||| | |||| ||||| ||||  ||||| | |||||||| ||    
T  2675305 ggctggaaatgagccgagtcgaatcgaacttgtctaagttcgactcgattcgttaagaattggctcggttcgaacttcggttcgagcttgatacgaa-ct 2675403  T
Q  182 ttgttttagctcgagttcggctcgttttaagtttacga 219  Q
    || ||| |||||||||||| ||||||| ||||| ||||    
T  2675404 ttttttcagctcgagttcgactcgtttaaagttcacga 2675441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 236
Target Start/End: Complemental strand, 13937315 - 13937236
Alignment:
Q  157 ttcgactcgagttcgatacgaacctttgttttagctcgagttcggctcgttttaagtttacgagcaactcggctcgactc 236  Q
    |||| ||||||||||| || ||| ||| || ||||||||||||||||||||| ||||| || | | |||||| |||||||    
T  13937315 ttcggctcgagttcgaaacaaacattttttctagctcgagttcggctcgtttaaagttcacaaaccactcggttcgactc 13937236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 236
Target Start/End: Original strand, 28242443 - 28242542
Alignment:
Q  137 agaattagttcggctcgaaattcgactcgagttcgatacgaacctttgttttagctcgagttcggctcgttttaagtttacgagcaactcggctcgactc 236  Q
    |||||| ||| ||||||||| |||| ||||||| || || |||||||  |||| || ||||||||||| ||| ||||| |||| |||||||  |||||||    
T  28242443 agaattggtttggctcgaaactcgaatcgagtttgaaacaaaccttttctttaacttgagttcggctcatttaaagttcacgaacaactcgattcgactc 28242542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 153
Target Start/End: Original strand, 22921438 - 22921512
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcg 153  Q
    |||||||||||||||||| ||||||| ||| |||||||||| ||| |||  |||||| | |||| |||| |||||    
T  22921438 tagggctggaaatgagtcgagtcgaatcgagcctgtctgagctcgactccactcgataaaaattggttctgctcg 22921512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 219
Target Start/End: Original strand, 29322134 - 29322191
Alignment:
Q  162 ctcgagttcgatacgaacctttgttttagctcgagttcggctcgttttaagtttacga 219  Q
    ||||||||||| ||||||  || ||| |||||||||||||||||||| ||||| ||||    
T  29322134 ctcgagttcgacacgaactattttttcagctcgagttcggctcgtttaaagttcacga 29322191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 219
Target Start/End: Complemental strand, 38523313 - 38523257
Alignment:
Q  163 tcgagttcgatacgaacctttgttttagctcgagttcggctcgttttaagtttacga 219  Q
    |||||||||| ||||||  || ||| |||||||||||||||||||| ||||| ||||    
T  38523313 tcgagttcgacacgaactattttttcagctcgagttcggctcgtttaaagttcacga 38523257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 39)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 79 - 226
Target Start/End: Complemental strand, 29678244 - 29678097
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    |||||||||||||||||| ||||||| |||||||||||||| | | |||| |||||| |||| | ||||||||||||| ||||||| ||||||| |||||    
T  29678244 tagggctggaaatgagtcgagtcgaatcgaacctgtctgagcttgactcgactcgataagaaatggttcggctcgaaactcgactcaagttcgaaacgaa 29678145  T
Q  179 cctttgttttagctcgagttcggctcgttttaagtttacgagcaactc 226  Q
    ||||| ||| | |||||||||||||||||| ||||| |||||||||||    
T  29678144 cctttttttcatctcgagttcggctcgtttaaagttcacgagcaactc 29678097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 79 - 219
Target Start/End: Complemental strand, 37441958 - 37441813
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgatt-----agaattagttcggctcgaaattcgactcgagttcgat 173  Q
    |||||||||||||||||| |||||||||||||||| ||||| |||||||||||||| |     |||||| ||||||||||||| ||| |||||||||||     
T  37441958 tagggctggaaatgagtcgagtcgaaccgaacctgcctgagctcggctcggctcgactcgataagaattggttcggctcgaaactcggctcgagttcgac 37441859  T
Q  174 acgaacctttgttttagctcgagttcggctcgttttaagtttacga 219  Q
    ||||||  || ||| |||||||||||||||||||| ||||| ||||    
T  37441858 acgaactattttttcagctcgagttcggctcgtttaaagttcacga 37441813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 79 - 228
Target Start/End: Original strand, 24575300 - 24575449
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    ||||| |||||||||||| ||||||  |||||||||||||| |||  | |  ||||| |||||| ||||||||||||| |||||||||||| || |||||    
T  24575300 tagggttggaaatgagtcgagtcgagtcgaacctgtctgagctcgatttgaatcgataagaattggttcggctcgaaactcgactcgagtttgaaacgaa 24575399  T
Q  179 cctttgttttagctcgagttcggctcgttttaagtttacgagcaactcgg 228  Q
    | ||| ||||| |||||||||||||||||| ||||| |||| ||||||||    
T  24575400 ctttttttttaactcgagttcggctcgtttaaagttcacgaacaactcgg 24575449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 79 - 200
Target Start/End: Complemental strand, 38061759 - 38061638
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    |||||||||||||||||| ||||||  |||||||||||||| |||  ||| |||||| |||||| ||||||||| |||||||||||||||||||  ||||    
T  38061759 tagggctggaaatgagtcgagtcgagtcgaacctgtctgagctcgattcgactcgataagaattggttcggctcaaaattcgactcgagttcgaagcgaa 38061660  T
Q  179 cctttgttttagctcgagttcg 200  Q
    ||||| ||| ||||||||||||    
T  38061659 cctttttttaagctcgagttcg 38061638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 79 - 228
Target Start/End: Complemental strand, 43090167 - 43090023
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    |||||||||||||||||| ||||||  ||||| ||||||||     ||||||||||  |||||| ||||||||||||| ||||||||||||| | |||||    
T  43090167 tagggctggaaatgagtcgagtcgagtcgaacttgtctgag-----ctcggctcgacaagaattggttcggctcgaaactcgactcgagttcaaaacgaa 43090073  T
Q  179 cctttgttttagctcgagttcggctcgttttaagtttacgagcaactcgg 228  Q
    | ||| |||  ||||||||||||||||||| ||||| |||||||||||||    
T  43090072 catttttttgggctcgagttcggctcgtttaaagttcacgagcaactcgg 43090023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 78 - 208
Target Start/End: Original strand, 32179332 - 32179462
Alignment:
Q  78 ttagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacga 177  Q
    ||||||||||||||||||| ||||||||||||| || ||||| ||||||||  ||||| |||||| ||||||||||||| ||| || ||||| || ||||    
T  32179332 ttagggctggaaatgagtcgagtcgaaccgaacttgcctgagctcggctcgattcgataagaattggttcggctcgaaactcggcttgagtttgacacga 32179431  T
Q  178 acctttgttttagctcgagttcggctcgttt 208  Q
    ||  || ||| ||||||||||||||||||||    
T  32179432 actattttttcagctcgagttcggctcgttt 32179462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 82 - 228
Target Start/End: Original strand, 44595832 - 44595972
Alignment:
Q  82 ggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaacct 181  Q
    ||||||||||||||| |||||||||||||||||||||     ||||| |||||| |||||| |||||| |||||| |||||| ||||||||||||||||     
T  44595832 ggctggaaatgagtcgagtcgaaccgaacctgtctga-----gctcgactcgataagaattggttcggttcgaaactcgacttgagttcgatacgaaccc 44595926  T
Q  182 ttgttttagctcgagttcggctcgttttaagtttacgagcaactcgg 228  Q
    || ||||| ||  |||||||||||||| ||||| |||| ||||||||    
T  44595927 tt-ttttaacttaagttcggctcgtttaaagttcacgaacaactcgg 44595972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 79 - 236
Target Start/End: Original strand, 7955649 - 7955806
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    ||||| |||||||||||| ||||||  |||| ||||||||| ||| |||| ||| || |||||| ||||||||||||| |||  |||||||||| |||||    
T  7955649 tagggttggaaatgagtcgagtcgagtcgaatctgtctgagctcgactcgactcaataagaattggttcggctcgaaactcggttcgagttcgaaacgaa 7955748  T
Q  179 cctttgttttagctcgagttcggctcgttttaagtttacgagcaactcggctcgactc 236  Q
     |||| || ||||||||||||||||||||| ||||| |||| | ||| || |||||||    
T  7955749 tcttttttctagctcgagttcggctcgtttaaagttcacgaaccacttggttcgactc 7955806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 82 - 219
Target Start/End: Original strand, 36418523 - 36418660
Alignment:
Q  82 ggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaacct 181  Q
    ||||||||||||||| ||||||| |||| ||| ||||| |||||||| |||||| |||||| ||||||||||||| ||| ||||||||||| |||||       
T  36418523 ggctggaaatgagtcgagtcgaatcgaatctgcctgagctcggctcgactcgataagaattggttcggctcgaaactcggctcgagttcgacacgaatta 36418622  T
Q  182 ttgttttagctcgagttcggctcgttttaagtttacga 219  Q
    || ||| ||||||||||||| |||||| ||||| ||||    
T  36418623 ttttttcagctcgagttcggttcgtttaaagttcacga 36418660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 78 - 165
Target Start/End: Complemental strand, 47603550 - 47603463
Alignment:
Q  78 ttagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcg 165  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||||  |||||| |||||| ||||||||||||| ||||||||    
T  47603550 ttagggctggaaatgagtcgagtcgaaccgaacctgcctgagttcggctcaactcgataagaattggttcggctcgaaactcgactcg 47603463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 79 - 228
Target Start/End: Complemental strand, 5205250 - 5205100
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    |||||||||||||||||| ||||||  |||||||||||||| |||  ||| ||| || |||||| ||||||||||||| |||||||||||| || |||||    
T  5205250 tagggctggaaatgagtcgagtcgagtcgaacctgtctgagctcgattcgactccataagaattggttcggctcgaaactcgactcgagtttgaaacgaa 5205151  T
Q  179 cc-tttgttttagctcgagttcggctcgttttaagtttacgagcaactcgg 228  Q
    || ||| ||||| ||| |||||| ||| ||| |||||  ||| ||||||||    
T  5205150 cctttttttttacctcaagttcgactcatttaaagttcgcgaacaactcgg 5205100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 106 - 236
Target Start/End: Complemental strand, 15257959 - 15257829
Alignment:
Q  106 cgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaacctttgttttagctcgagttcggctcg 205  Q
    |||| ||||||||| ||  |||| |||||| |||||| ||||||||||||| |||  |||||||||| ||||||| || || ||||||||||||||||||    
T  15257959 cgaatctgtctgagctcaactcgactcgataagaattggttcggctcgaaactcggttcgagttcgaaacgaaccatttttctagctcgagttcggctcg 15257860  T
Q  206 ttttaagtttacgagcaactcggctcgactc 236  Q
    ||| ||||| |||| | |||||| |||||||    
T  15257859 tttaaagttcacgaaccactcggttcgactc 15257829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 80 - 219
Target Start/End: Original strand, 35309009 - 35309144
Alignment:
Q  80 agggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaac 179  Q
    ||||||||||||||||  |||||||||||||||  ||||| |||| ||| |||||| |||||| ||||||||||||| |||  |||||||| | ||||      
T  35309009 agggctggaaatgagttgagtcgaaccgaacctacctgagctcggttcgactcgataagaattggttcggctcgaaactcggttcgagttccacacga-- 35309106  T
Q  180 ctttgttttagctcgagttcggctcgttttaagtttacga 219  Q
      || ||| |||||||||||||||| ||| ||||||||||    
T  35309107 --ttttttcagctcgagttcggctcatttaaagtttacga 35309144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 106 - 219
Target Start/End: Original strand, 7994773 - 7994885
Alignment:
Q  106 cgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaacctttgttttagctcgagttcggctcg 205  Q
    ||||||||| |||||||| |||  |||||| ||||||  ||| |||||||| ||||||||||||||| |||||||||| ||||||| ||||||| |||||    
T  7994773 cgaacctgtttgagttcgactcaactcgataagaattgattcagctcgaaactcgactcgagttcgaaacgaaccttt-ttttagcacgagttcagctcg 7994871  T
Q  206 ttttaagtttacga 219  Q
    | | ||||||||||    
T  7994872 tataaagtttacga 7994885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 79 - 216
Target Start/End: Complemental strand, 45654507 - 45654370
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    ||||| |||||||||||| ||||||  |||||||| ||||| ||| |||| |||||| |||||| |||| ||| |||||||| ||||||||||| |||||    
T  45654507 tagggttggaaatgagtcgagtcgagtcgaacctgcctgagctcgactcgactcgataagaattggttcagcttgaaattcggctcgagttcgacacgaa 45654408  T
Q  179 cctttgttttagctcgagttcggctcgttttaagttta 216  Q
       || ||| |||||| ||||| ||||||| |||||||    
T  45654407 ttattttttcagctcgggttcgactcgtttaaagttta 45654370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 79 - 171
Target Start/End: Original strand, 28005735 - 28005827
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcg 171  Q
    |||||||||||||||||| ||||||  ||||||| |||||| ||| |||| |||||| |||||| ||||||||||||| ||||||| ||||||    
T  28005735 tagggctggaaatgagtcgagtcgagtcgaacctctctgagctcgactcgactcgataagaattggttcggctcgaaactcgactcaagttcg 28005827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 79 - 154
Target Start/End: Complemental strand, 24470654 - 24470579
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcga 154  Q
    |||||||||||||||||| |||||||||||||||| ||||| |||||||  |||||| |||||| |||||||||||    
T  24470654 tagggctggaaatgagtcgagtcgaaccgaacctgcctgagctcggctcaactcgataagaattggttcggctcga 24470579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 79 - 214
Target Start/End: Complemental strand, 45582239 - 45582104
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    |||||||||||||||||| ||||||  |||| |||| |||| ||| |||| |||||| || |||||||| |||||||| |||  | |||||||| ||| |    
T  45582239 tagggctggaaatgagtcgagtcgagtcgaatctgtatgagctcgactcgactcgataaggattagttcagctcgaaactcggtttgagttcgacacgga 45582140  T
Q  179 cctttgttttagctcgagttcggctcgttttaagtt 214  Q
    | ||| ||| ||||||||||||| |||||| |||||    
T  45582139 cttttttttcagctcgagttcggttcgtttaaagtt 45582104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 113 - 228
Target Start/End: Original strand, 31868923 - 31869038
Alignment:
Q  113 gtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaacctttgttttagctcgagttcggctcgttttaag 212  Q
    ||||||| |||||||| ||| || ||||||   ||||||||||| |||||||||||||||||| |||| || ||| | |||| ||||||||||||| |||    
T  31868923 gtctgagctcggctcgactcaataagaattgactcggctcgaaactcgactcgagttcgatacaaaccattttttaaactcgggttcggctcgtttaaag 31869022  T
Q  213 tttacgagcaactcgg 228  Q
    || |||| || |||||    
T  31869023 ttcacgaacatctcgg 31869038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 121 - 226
Target Start/End: Complemental strand, 13645814 - 13645709
Alignment:
Q  121 tcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaacctttgttttagctcgagttcggctcgttttaagtttacgag 220  Q
    |||||||| ||||||||||||| ||||||||||||| |||||||||||| || || ||| ||| ||   ||||||||||| ||| ||| || || |||||    
T  13645814 tcggctcgactcgattagaattggttcggctcgaaactcgactcgagtttgaaacaaactttttttccggctcgagttcgactcatttaaaattcacgag 13645715  T
Q  221 caactc 226  Q
    ||||||    
T  13645714 caactc 13645709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 214
Target Start/End: Original strand, 7595719 - 7595855
Alignment:
Q  78 ttagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacga 177  Q
    |||||||||||||| |||||| ||||| |||| ||||||||| ||  |||| |||| | |||||||| |||| |||||  |||  ||||||| || ||||    
T  7595719 ttagggctggaaataagtcaaatcgaatcgaatctgtctgagctcaactcgactcgttaagaattagctcggttcgaacctcggttcgagtttgacacga 7595818  T
Q  178 acctttgttttagctcgagttcggctcgttttaagtt 214  Q
     | ||| ||| ||||| |||||||||||||| |||||    
T  7595819 gcttttttttcagctcaagttcggctcgtttaaagtt 7595855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 78 - 228
Target Start/End: Original strand, 36118229 - 36118373
Alignment:
Q  78 ttagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacga 177  Q
    ||||||||| ||||||||| |||||| |||||| | ||||||     |||| |||||| ||||||  ||| |||| ||| || |||| |||||||||| |    
T  36118229 ttagggctgaaaatgagtcgagtcgatccgaacttatctgag-----ctcgactcgataagaattgattcagctcaaaactcaactcaagttcgatacaa 36118323  T
Q  178 acctttgttttagctcgagttcggctcgttttaagtttacgagcaactcgg 228  Q
    || ||| |||||||||||||||| |||||||  |||| |||| ||||||||    
T  36118324 acattt-ttttagctcgagttcgactcgtttgtagttcacgaacaactcgg 36118373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 226
Target Start/End: Original strand, 3576996 - 3577085
Alignment:
Q  137 agaattagttcggctcgaaattcgactcgagttcgatacgaacctttgttttagctcgagttcggctcgttttaagtttacgagcaactc 226  Q
    |||||| |||| |||||||| |||| | ||||||||||| ||| |||  |||| |||||||||||||||||| ||||| |||| ||||||    
T  3576996 agaattggttcagctcgaaactcgatttgagttcgatacaaacattttatttaactcgagttcggctcgtttaaagttcacgaacaactc 3577085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 226
Target Start/End: Original strand, 30211809 - 30211909
Alignment:
Q  126 tcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaacctttgttttagctcgagttcggctcgttttaagtttacgagcaact 225  Q
    |||||||||| | |||||||||||||||||| || |||||||||||||||||  |||  |||| | ||||||||| ||| ||| || || ||||| ||||    
T  30211809 tcggctcgataaaaattagttcggctcgaaactcaactcgagttcgatacgattcttatttttggatcgagttcgactcatttaaaattcacgagtaact 30211908  T
Q  226 c 226  Q
    |    
T  30211909 c 30211909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 78 - 214
Target Start/End: Complemental strand, 48575877 - 48575741
Alignment:
Q  78 ttagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacga 177  Q
    |||||| || ||||||||| | ||||| ||||| |||||||| ||| |||| |||||| ||||||  || | ||||||| ||||||| ||||| | ||||    
T  48575877 ttagggttgaaaatgagtcgaatcgaatcgaacatgtctgagctcgactcgactcgataagaatttatttgactcgaaactcgactcaagttcaacacga 48575778  T
Q  178 acctttgttttagctcgagttcggctcgttttaagtt 214  Q
    ||  || ||| |||||||||||  ||||||| |||||    
T  48575777 actcttttttcagctcgagttcaactcgtttaaagtt 48575741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 146 - 236
Target Start/End: Original strand, 15305949 - 15306039
Alignment:
Q  146 tcggctcgaaattcgactcgagttcgatacgaacctttgttttagctcgagttcggctcgttttaagtttacgagcaactcggctcgactc 236  Q
    ||||||| ||| |||||||||||| |||||||||| || | ||  ||| |||||||||||||| ||||| ||||  ||||||| |||||||    
T  15305949 tcggctcaaaactcgactcgagtttgatacgaaccattttcttgactcaagttcggctcgtttaaagttcacgaaaaactcggttcgactc 15306039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 78 - 219
Target Start/End: Complemental strand, 46265747 - 46265608
Alignment:
Q  78 ttagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacga 177  Q
    ||||||||||||||||||| ||| ||| ||||||||| | || ||  || | |||| | ||||||||||||| |||||  |||| ||||||| || ||||    
T  46265747 ttagggctggaaatgagtcgagttgaatcgaacctgtttaagctcaacttgactcgttaagaattagttcggttcgaacctcgattcgagtttgacacga 46265648  T
Q  178 acctttgttttagctcgagttcggctcgttttaagtttacga 219  Q
     |  || |||||| || |||||||||||||| ||||| ||||    
T  46265647 gc--tttttttagttcaagttcggctcgtttaaagttcacga 46265608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 219
Target Start/End: Complemental strand, 24470583 - 24470526
Alignment:
Q  162 ctcgagttcgatacgaacctttgttttagctcgagttcggctcgttttaagtttacga 219  Q
    ||||||||||||||||||  || ||| |||||||||||||||||||| ||||| ||||    
T  24470583 ctcgagttcgatacgaactattttttcagctcgagttcggctcgtttaaagttcacga 24470526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 142
Target Start/End: Complemental strand, 14579172 - 14579108
Alignment:
Q  78 ttagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaatt 142  Q
    ||||||||||||||||||| ||||||| ||||||||| |||| ||| |||| |||| | ||||||    
T  14579172 ttagggctggaaatgagtcgagtcgaatcgaacctgtatgagctcgactcgactcgttaagaatt 14579108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 214
Target Start/End: Original strand, 40002320 - 40002455
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    |||||||||||||||||| ||||||| |||||| |||| | |||| |||| |||| | |||||| | |||| |||||  |||  || |||| || |||||    
T  40002320 tagggctggaaatgagtcgagtcgaatcgaacccgtctaaattcgactcgactcgttaagaattggctcggttcgaacctcggttcaagtttgacacgaa 40002419  T
Q  179 cctttgttttagctcgagttcggctcgttttaagtt 214  Q
    | ||| ||  ||||| |||||| ||||||| |||||    
T  40002420 ctttttttccagctcaagttcgactcgtttaaagtt 40002455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 122
Target Start/End: Original strand, 42936495 - 42936538
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttc 122  Q
    |||||||||||||||||| ||||||| ||||| |||||||||||    
T  42936495 tagggctggaaatgagtcgagtcgaatcgaacttgtctgagttc 42936538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 226
Target Start/End: Complemental strand, 18349877 - 18349775
Alignment:
Q  124 gctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaacctttgttttagctcgagttcggctcgttttaagtttacgagcaa 223  Q
    |||||||||||| |||||| | |  |||| ||| |||||||||||||||||| ||| ||| | || |||| |||||||||||  | ||||| |||| |||    
T  18349877 gctcggctcgataagaatttgataagctcaaaactcgactcgagttcgatacaaacttttttgttggctcaagttcggctcgaatcaagttaacgaacaa 18349778  T
Q  224 ctc 226  Q
    |||    
T  18349777 ctc 18349775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 38061647 - 38061601
Alignment:
Q  162 ctcgagttcgatacgaacctttgttttagctcgagttcggctcgttt 208  Q
    ||||||||||| ||||||| || ||| ||||||||||||||||||||    
T  38061647 ctcgagttcgaaacgaaccattttttaagctcgagttcggctcgttt 38061601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 134
Target Start/End: Original strand, 19507936 - 19507993
Alignment:
Q  77 tttagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcga 134  Q
    |||||||||||||||||||| ||||||  ||||| | |||||| |||||||| |||||    
T  19507936 tttagggctggaaatgagtcgagtcgagtcgaacttatctgagctcggctcgactcga 19507993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 208
Target Start/End: Complemental strand, 21681762 - 21681633
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    ||||| |||||||||| | ||||||  |||||||| ||||| ||  |||| |||||| |||||| |||| |||  ||| ||| ||||||||||| |||||    
T  21681762 tagggttggaaatgagccgagtcgagtcgaacctgcctgagctcaactcgactcgataagaattggttcagcttaaaactcggctcgagttcgacacgaa 21681663  T
Q  179 cctttgttttagctcgagttcggctcgttt 208  Q
    |  || ||| |||||| ||||  |||||||    
T  21681662 ctattttttcagctcgggttcaactcgttt 21681633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 119
Target Start/End: Original strand, 35810109 - 35810150
Alignment:
Q  78 ttagggctggaaatgagtcaagtcgaaccgaacctgtctgag 119  Q
    ||||||||||||||||||| ||||||| ||||||| ||||||    
T  35810109 ttagggctggaaatgagtcgagtcgaatcgaacctatctgag 35810150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 214
Target Start/End: Complemental strand, 14771004 - 14770868
Alignment:
Q  78 ttagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacga 177  Q
    ||||||||||||||||| | ||||||| ||||| ||| |||  ||| |||| |||| | |||||| | ||||  ||||  |||  ||||| | || ||||    
T  14771004 ttagggctggaaatgagccgagtcgaatcgaacatgtttgaactcgactcgactcgttaagaattggctcggtccgaacctcggttcgagcttgacacga 14770905  T
Q  178 acctttgttttagctcgagttcggctcgttttaagtt 214  Q
    || ||| ||| ||| |||||||||||||||| |||||    
T  14770904 acttttttttcagcccgagttcggctcgtttaaagtt 14770868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 142
Target Start/End: Original strand, 23916134 - 23916194
Alignment:
Q  82 ggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaatt 142  Q
    ||||||||||||||| ||||||| ||||||||||| || ||| |||| |||| | ||||||    
T  23916134 ggctggaaatgagtcgagtcgaatcgaacctgtctaagctcgactcgactcgttaagaatt 23916194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 236
Target Start/End: Original strand, 47982726 - 47982817
Alignment:
Q  144 gttcggctcgaaattcgactcgagttcgatacgaacctttgttttagctcgagttcggctcgttttaagtttacgagcaactcggctcgactc 236  Q
    |||||| |||||| ||||||||||||| | |||||| ||| ||||| |||||||| |  |||||| ||||| || | |||||||| |||||||    
T  47982726 gttcggttcgaaactcgactcgagttcaaaacgaacattt-ttttaactcgagtttgattcgtttaaagttcacaaacaactcggttcgactc 47982817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 43)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 78 - 228
Target Start/End: Original strand, 52705592 - 52705742
Alignment:
Q  78 ttagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacga 177  Q
    ||||||||||||||||||| ||||||  ||||| |||||||| |||||||| |||||| |||||| ||||||||||||| |||| |||||||  | | ||    
T  52705592 ttagggctggaaatgagtcgagtcgagtcgaacttgtctgagctcggctcgactcgataagaattggttcggctcgaaactcgattcgagtttaaaatga 52705691  T
Q  178 acctttgttttagctcgagttcggctcgttttaagtttacgagcaactcgg 228  Q
    |||||| |||  ||||||||||||||||||| |||||||||||||||||||    
T  52705692 acctttttttgggctcgagttcggctcgtttaaagtttacgagcaactcgg 52705742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 79 - 219
Target Start/End: Original strand, 19850132 - 19850272
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||||| |||||| |  ||| ||||||||||||| ||| ||||||||||| |||||    
T  19850132 tagggctggaaatgagtcgagtcgaaccgaacctgtctgagctcggctcgactcgataaacattggttcggctcgaaactcggctcgagttcgacacgaa 19850231  T
Q  179 cctttgttttagctcgagttcggctcgttttaagtttacga 219  Q
    |  || ||| |||||||||||||||||||| ||||| ||||    
T  19850232 ctattttttcagctcgagttcggctcgtttaaagttcacga 19850272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 86 - 219
Target Start/End: Original strand, 50605462 - 50605595
Alignment:
Q  86 ggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaacctttgt 185  Q
    ||||||||||| |||||||||||||||||||||| |||||||| |||||| |||||| ||||||||||||| ||| ||||||||||| ||||||  || |    
T  50605462 ggaaatgagtcgagtcgaaccgaacctgtctgagctcggctcgactcgataagaattggttcggctcgaaactcggctcgagttcgacacgaactatttt 50605561  T
Q  186 tttagctcgagttcggctcgttttaagtttacga 219  Q
    || ||||||||||||||| |||| ||||| ||||    
T  50605562 ttcagctcgagttcggcttgtttaaagttcacga 50605595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 79 - 219
Target Start/End: Original strand, 21436307 - 21436447
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||  |||||||||||| ||| ||||| ||||| ||| |    
T  21436307 tagggttggaaatgagtcgagtcgaaccgaacctgtctgagttcggctcgactcgataagaattgattcggctcgaaactcggctcgaattcgacacgga 21436406  T
Q  179 cctttgttttagctcgagttcggctcgttttaagtttacga 219  Q
    |  || ||| |||||||||||||||||||| ||||| ||||    
T  21436407 ctattttttcagctcgagttcggctcgtttaaagttcacga 21436447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 79 - 219
Target Start/End: Original strand, 49820378 - 49820518
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    |||| |||||||||| || ||||||| |||||||| ||||| |||||||| |||||| |||||| ||||||||||||| ||||||||||||||| |||||    
T  49820378 taggactggaaatgaatcgagtcgaatcgaacctgcctgagctcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgacacgaa 49820477  T
Q  179 cctttgttttagctcgagttcggctcgttttaagtttacga 219  Q
    |  || ||| |||||||||||||||||||| ||||| ||||    
T  49820478 ctattttttcagctcgagttcggctcgtttaaagttcacga 49820518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 79 - 219
Target Start/End: Original strand, 53369062 - 53369202
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    ||||| |||||||||||| |||||||||||| ||| |||||||||||||  |||||| |||||| ||||||||||||| ||| ||||||||||| |||||    
T  53369062 tagggttggaaatgagtcgagtcgaaccgaatctgcctgagttcggctcaactcgataagaattggttcggctcgaaactcggctcgagttcgacacgaa 53369161  T
Q  179 cctttgttttagctcgagttcggctcgttttaagtttacga 219  Q
    |  || ||| |||||||||||||||||||| ||||| ||||    
T  53369162 ctattttttcagctcgagttcggctcgtttaaagttcacga 53369202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 79 - 219
Target Start/End: Original strand, 9469428 - 9469567
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    |||||||||||||||||| |||||| | ||||||||||||| |||||||| |||||| |||||| ||||||||||||| ||| ||||||||||| |||||    
T  9469428 tagggctggaaatgagtcgagtcgatc-gaacctgtctgagctcggctcgactcgataagaattggttcggctcgaaactcggctcgagttcgacacgaa 9469526  T
Q  179 cctttgttttagctcgagttcggctcgttttaagtttacga 219  Q
    |  || ||| ||||||||||||| |||||| ||||| ||||    
T  9469527 ctattttttcagctcgagttcggatcgtttaaagttcacga 9469567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 79 - 236
Target Start/End: Original strand, 43386534 - 43386691
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    |||||||||||||||||| |||||||| ||||||||||||| ||| |||| |||||| |||||| | |||||| |||| ||||||||||||||| |||||    
T  43386534 tagggctggaaatgagtcgagtcgaactgaacctgtctgagctcgactcgactcgataagaatttgctcggcttgaaactcgactcgagttcgacacgaa 43386633  T
Q  179 cctttgttttagctcgagttcggctcgttttaagtttacgagcaactcggctcgactc 236  Q
    |  || ||| ||||||| |||| ||||||| ||||| |||| ||  |||| |||||||    
T  43386634 ctcttttttcagctcgaattcgactcgtttaaagttcacgaacagttcggttcgactc 43386691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 79 - 208
Target Start/End: Original strand, 48977004 - 48977133
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    |||||||||||||||||| |||||||||||| ||| ||||  ||||||||  ||||| |||||| ||||||||||||| ||| ||||||||||| |||||    
T  48977004 tagggctggaaatgagtcgagtcgaaccgaatctgcctgaactcggctcgattcgataagaattggttcggctcgaaactcggctcgagttcgacacgaa 48977103  T
Q  179 cctttgttttagctcgagttcggctcgttt 208  Q
    |  || ||| ||||||||||||||||||||    
T  48977104 ctattttttcagctcgagttcggctcgttt 48977133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 79 - 207
Target Start/End: Original strand, 25133933 - 25134061
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    |||||||||||||||||| ||||||  |||| ||||||||| ||| |||| |||||| |||||| |||||||||||||  ||  |||||||||| |||||    
T  25133933 tagggctggaaatgagtcgagtcgagtcgaatctgtctgagctcgactcgactcgataagaattggttcggctcgaaacccggttcgagttcgaaacgaa 25134032  T
Q  179 cctttgttttagctcgagttcggctcgtt 207  Q
    | ||| || |||||| |||||||||||||    
T  25134033 cattttttctagctcaagttcggctcgtt 25134061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 97 - 214
Target Start/End: Complemental strand, 51409236 - 51409119
Alignment:
Q  97 aagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaacctttgttttagctcgag 196  Q
    |||||||  ||||| |||||||| ||| |||| |||||| |||||| ||||||||||||| |||| |||||||||| ||||||  || ||||||||||||    
T  51409236 aagtcgagtcgaacttgtctgagctcgactcgactcgataagaatttgttcggctcgaaactcgattcgagttcgacacgaactatttttttagctcgag 51409137  T
Q  197 ttcggctcgttttaagtt 214  Q
    |||| ||||||| |||||    
T  51409136 ttcgactcgtttaaagtt 51409119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 79 - 179
Target Start/End: Original strand, 79760 - 79860
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    |||||||||||||||||| | ||||| ||||||||||| ||||||||||| |||||| ||| || | |||| |||||| ||||||||||||||| |||||    
T  79760 tagggctggaaatgagtcgaatcgaatcgaacctgtctaagttcggctcgactcgataagattttgctcggttcgaaactcgactcgagttcgacacgaa 79859  T
Q  179 c 179  Q
    |    
T  79860 c 79860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 79 - 219
Target Start/End: Original strand, 22183763 - 22183903
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    ||||||| ||||||| || |||||||||||||||||||||| |||| ||| || ||| |||||| | ||||||| ||| ||||||||||||||| |||||    
T  22183763 tagggctagaaatgaatcgagtcgaaccgaacctgtctgagctcggatcgacttgataagaatttgctcggctcaaaactcgactcgagttcgacacgaa 22183862  T
Q  179 cctttgttttagctcgagttcggctcgttttaagtttacga 219  Q
    |  || ||| ||||||| || | ||||||| ||||| ||||    
T  22183863 ctcttttttcagctcgaatttgactcgtttaaagttcacga 22183903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 78 - 236
Target Start/End: Complemental strand, 12673809 - 12673650
Alignment:
Q  78 ttagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacga 177  Q
    |||||| || ||||||||| ||||||  |||||||||||||| ||| |||  |||  | |||| ||||||||||||||| |||||||||||| || ||||    
T  12673809 ttagggttgaaaatgagtcgagtcgagtcgaacctgtctgagctcgactcaactctttaagaaatagttcggctcgaaactcgactcgagtttgaaacga 12673710  T
Q  178 acc-tttgttttagctcgagttcggctcgttttaagtttacgagcaactcggctcgactc 236  Q
    ||| ||| ||||| ||| | |||||||||||| |||||  ||| |||||||| |||||||    
T  12673709 accttttattttaactcaatttcggctcgtttaaagttcgcgaacaactcggttcgactc 12673650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 79 - 154
Target Start/End: Complemental strand, 44792921 - 44792846
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcga 154  Q
    |||||||||||||||||| ||||||||||||||||| |||| |||||||| |||||| |||||| |||||||||||    
T  44792921 tagggctggaaatgagtcgagtcgaaccgaacctgtatgagctcggctcgactcgataagaattggttcggctcga 44792846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 79 - 166
Target Start/End: Original strand, 52812967 - 52813054
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcga 166  Q
    |||||||  ||||||||| ||||||||||||||||||||||||||||||| |||||| |||||| | |||||| |||| |||||||||    
T  52812967 tagggctaaaaatgagtcgagtcgaaccgaacctgtctgagttcggctcgactcgataagaatttgctcggcttgaaactcgactcga 52813054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 78 - 236
Target Start/End: Complemental strand, 28266880 - 28266727
Alignment:
Q  78 ttagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacga 177  Q
    ||||||||| ||||||||| |||||||  |||| ||||||||     |||| || ||| |||||| | ||||||||||| ||||||||||||||| ||||    
T  28266880 ttagggctgaaaatgagtcgagtcgaattgaacatgtctgag-----ctcgactggataagaatttgctcggctcgaaactcgactcgagttcgacacga 28266786  T
Q  178 acctttgttttagctcgagttcggctcgttttaagtttacgagcaactcggctcgactc 236  Q
    ||  || |||||||||||||||| ||||||| ||||| |||| ||  |||| |||||||    
T  28266785 actctttttttagctcgagttcgactcgtttaaagttcacgaacagttcggttcgactc 28266727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 106 - 208
Target Start/End: Complemental strand, 46945288 - 46945186
Alignment:
Q  106 cgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaacctttgttttagctcgagttcggctcg 205  Q
    |||||||||||||| ||| |||  |||||| |||||| ||||||||||||| |||||||||||| || || ||||||| ||||| ||||| |||||||||    
T  46945288 cgaacctgtctgagctcgactcaactcgataagaattggttcggctcgaaactcgactcgagtttgaaacaaaccttttttttaactcgaattcggctcg 46945189  T
Q  206 ttt 208  Q
    |||    
T  46945188 ttt 46945186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 79 - 208
Target Start/End: Original strand, 51994083 - 51994212
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    |||||||||||||||||| ||||||| |||| | ||||||| ||| |||| |||| | |||||| |||| |||||||| |||||||||||||||  ||||    
T  51994083 tagggctggaaatgagtcgagtcgaatcgaatccgtctgagctcgactcgactcgttaagaattggttcagctcgaaactcgactcgagttcgaaccgaa 51994182  T
Q  179 cctttgttttagctcgagttcggctcgttt 208  Q
    | ||| ||| ||||| |  |||||||||||    
T  51994183 cttttttttaagctcaaactcggctcgttt 51994212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 81 - 168
Target Start/End: Original strand, 7505426 - 7505513
Alignment:
Q  81 gggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagt 168  Q
    |||||||||||||||| ||||||  ||||| |||||||| |||||||| |||||| ||||||  |||||||||||| |||||||||||    
T  7505426 gggctggaaatgagtcgagtcgagtcgaacttgtctgagctcggctcgactcgataagaattgattcggctcgaaactcgactcgagt 7505513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 78 - 225
Target Start/End: Original strand, 44377614 - 44377751
Alignment:
Q  78 ttagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacga 177  Q
    ||||||||||||||||||| |||||||||     ||||||||     |||| |||||| |||||| ||||||||||||| |||||||||||| || ||||    
T  44377614 ttagggctggaaatgagtcgagtcgaacc-----tgtctgag-----ctcgactcgataagaattggttcggctcgaaactcgactcgagtttgaaacga 44377703  T
Q  178 acctttgttttagctcgagttcggctcgttttaagtttacgagcaact 225  Q
    ||||||  | || || ||||||||||||||| ||||| |||| |||||    
T  44377704 accttttctctaacttgagttcggctcgtttaaagttcacgaacaact 44377751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 79 - 236
Target Start/End: Original strand, 40797154 - 40797311
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    ||||| |||||||||||| ||||||  |||| ||||||||| ||| |||| |||||| |||||| |||||||||||||   | |||||||||   |||||    
T  40797154 taggggtggaaatgagtcgagtcgagtcgaatctgtctgagctcgactcgactcgataagaattggttcggctcgaaacatggctcgagttcacaacgaa 40797253  T
Q  179 cctttgttttagctcgagttcggctcgttttaagtttacgagcaactcggctcgactc 236  Q
    ||| | || || ||||||||||| |||||| ||||| |||| | |||| | |||||||    
T  40797254 cctcttttctaactcgagttcgggtcgtttaaagttcacgaaccactcagttcgactc 40797311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 79 - 213
Target Start/End: Complemental strand, 55892811 - 55892684
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    |||||||||||||||||| ||||||| |||| || |||||| ||| |||| |||||| |||||| | |||||       ||||||||||||||| |||||    
T  55892811 tagggctggaaatgagtcgagtcgaatcgaatctatctgagctcgactcgactcgataagaatttgctcggc-------tcgactcgagttcgacacgaa 55892719  T
Q  179 cctttgttttagctcgagttcggctcgttttaagt 213  Q
    |  || |||||||||||||||| ||||||| ||||    
T  55892718 ctatttttttagctcgagttcgactcgtttaaagt 55892684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 107 - 214
Target Start/End: Original strand, 1803195 - 1803302
Alignment:
Q  107 gaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaacctttgttttagctcgagttcggctcgt 206  Q
    |||||||||||||||||  |||  ||||| | |||| |||||| |||||| | |||||||||||||  ||||||||| ||| ||||||||||||| ||||    
T  1803195 gaacctgtctgagttcgattcgattcgataaaaattggttcggttcgaaacttgactcgagttcgaagcgaacctttttttaagctcgagttcggttcgt 1803294  T
Q  207 tttaagtt 214  Q
    || |||||    
T  1803295 ttaaagtt 1803302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 79 - 154
Target Start/End: Complemental strand, 12790286 - 12790211
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcga 154  Q
    |||||||| ||||||||| |||||||||||||||||||||| ||||||||  ||||| |||||| | |||||||||    
T  12790286 tagggctgaaaatgagtcgagtcgaaccgaacctgtctgagctcggctcgattcgataagaattggctcggctcga 12790211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 78 - 205
Target Start/End: Complemental strand, 50241035 - 50240908
Alignment:
Q  78 ttagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacga 177  Q
    ||||||||||||||||| | |||| || |||||   |||||| ||| |||| |||| | | |||| |||| |||||||| || |||||||||||| || |    
T  50241035 ttagggctggaaatgagccgagtcaaatcgaacgcatctgagctcgactcgactcgttaaaaattggttcagctcgaaactctactcgagttcgaaacaa 50240936  T
Q  178 acctttgttttagctcgagttcggctcg 205  Q
    |||||| |||||||||| ||||||||||    
T  50240935 accttttttttagctcgtgttcggctcg 50240908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 85 - 151
Target Start/End: Original strand, 45674310 - 45674376
Alignment:
Q  85 tggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggct 151  Q
    |||||||||||| |||||||||||||||| ||||| |||||||| |||||| |||||| ||||||||    
T  45674310 tggaaatgagtcgagtcgaaccgaacctgcctgagctcggctcgactcgataagaattggttcggct 45674376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 124 - 232
Target Start/End: Complemental strand, 16743214 - 16743106
Alignment:
Q  124 gctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaacctttgttttagctcgagttcggctcgttttaagtttacgagcaa 223  Q
    ||||| |||||| |||||| ||||||||||||| ||||||| |||| | |||||||| || ||||| || ||||||| || | || ||||| |||| |||    
T  16743214 gctcgactcgataagaattggttcggctcgaaactcgactcaagtttgttacgaaccatttttttaacttgagttcgacttgattaaagttcacgaacaa 16743115  T
Q  224 ctcggctcg 232  Q
    |||||||||    
T  16743114 ctcggctcg 16743106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 219
Target Start/End: Complemental strand, 24009518 - 24009430
Alignment:
Q  131 tcgattagaattagttcggctcgaaattcgactcgagttcgatacgaacctttgttttagctcgagttcggctcgttttaagtttacga 219  Q
    ||||| |||||| ||||  |||||||  |||||||||||| | |||||||||| ||||||||||||||| |||||||| ||||| ||||    
T  24009518 tcgataagaattggttcaactcgaaacccgactcgagttcaaaacgaaccttttttttagctcgagttctgctcgtttaaagttcacga 24009430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 124 - 236
Target Start/End: Complemental strand, 50711536 - 50711424
Alignment:
Q  124 gctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaacctttgttttagctcgagttcggctcgttttaagtttacgagcaa 223  Q
    ||||| |||||| |||||| ||||||||| ||| |||  |||||||| | ||||| |||| || ||||||||||||||||||||| ||||| || | | |    
T  50711536 gctcgactcgataagaattggttcggctcaaaactcggttcgagttcaaaacgaatcttttttctagctcgagttcggctcgtttaaagttcacaaacca 50711437  T
Q  224 ctcggctcgactc 236  Q
    ||||| |||||||    
T  50711436 ctcggttcgactc 50711424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 219
Target Start/End: Complemental strand, 4275683 - 4275542
Alignment:
Q  78 ttagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacga 177  Q
    |||||| |||||||||| | ||||||  |||| ||| ||||| ||| |||| |||||| |||||| |||| |||||||| ||| ||||||||||| || |    
T  4275683 ttagggttggaaatgagccgagtcgagtcgaatctgcctgagctcgactcgactcgataagaattggttcagctcgaaactcggctcgagttcgacacaa 4275584  T
Q  178 acctttgttttagctcgagttcggctcgttttaagtttacga 219  Q
    ||  || ||| |||| | ||||| ||||||| ||||| ||||    
T  4275583 actattttttcagcttgggttcgactcgtttaaagttcacga 4275542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 171
Target Start/End: Original strand, 22720747 - 22720836
Alignment:
Q  82 ggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcg 171  Q
    |||||||||||| || ||||||| |||||  ||||||| |||||||  |||||| |||||| ||||||||||||| ||||  ||||||||    
T  22720747 ggctggaaatgaatcgagtcgaatcgaactagtctgagctcggctcaactcgataagaattggttcggctcgaaactcgatacgagttcg 22720836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 171
Target Start/End: Complemental strand, 38493737 - 38493652
Alignment:
Q  86 ggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcg 171  Q
    ||||||||||| ||||||| |||||  ||||||||||| |||| | |||| |||||||| |||||| |||| |||| |||||||||    
T  38493737 ggaaatgagtctagtcgaatcgaactcgtctgagttcgactcgacccgataagaattagatcggcttgaaactcgaatcgagttcg 38493652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 49378232 - 49378183
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcg 128  Q
    |||||| ||||||||||| |||||||||||||||||||||| ||||||||    
T  49378232 tagggccggaaatgagtcgagtcgaaccgaacctgtctgagctcggctcg 49378183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 228
Target Start/End: Original strand, 35778525 - 35778625
Alignment:
Q  125 ctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaacctttgttttagctcgagttcggctcgttttaagtttacgagcaac 224  Q
    |||| |||||| |||||||||||||||| ||||||||||| ||||  | |||||  ||| ||||| |||||||||||||||  |||||||||| | ||||    
T  35778525 ctcgactcgataagaattagttcggctcaaaattcgactcaagtttaaaacgaatattt-ttttaactcgagttcggctcg--ttaagtttacaaacaac 35778621  T
Q  225 tcgg 228  Q
    ||||    
T  35778622 tcgg 35778625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 124 - 228
Target Start/End: Complemental strand, 48151832 - 48151728
Alignment:
Q  124 gctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaacctttgttttagctcgagttcggctcgttttaagtttacgagcaa 223  Q
    ||||| |||||| |||||| | ||||||| ||||| ||||||| ||| |||||||||||| |  || |||||||||| ||||||| ||||| |||| | |    
T  48151832 gctcgactcgataagaattggctcggctcaaaatttgactcgaattcaatacgaacctttttcctaactcgagttcgactcgtttaaagttcacgaacta 48151733  T
Q  224 ctcgg 228  Q
    |||||    
T  48151732 ctcgg 48151728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 236
Target Start/End: Original strand, 52813045 - 52813156
Alignment:
Q  125 ctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaacctttgttttagctcgagttcggctcgttttaagtttacgagcaac 224  Q
    |||| |||||| |||||| | |||||| |||| ||||||||||||||| ||||||  || ||| ||||||| |||| ||||||| ||||| |||| ||      
T  52813045 ctcgactcgataagaatttgctcggcttgaaactcgactcgagttcgacacgaactcttttttcagctcgaattcgcctcgtttaaagttcacgaacagt 52813144  T
Q  225 tcggctcgactc 236  Q
    |||| |||||||    
T  52813145 tcggttcgactc 52813156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 228
Target Start/End: Complemental strand, 11055973 - 11055829
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    ||||||| |||||||||| ||||||  |||| |  |||||||||| |||| |||| | ||||||   |||||||||||     |||||||||||||||||    
T  11055973 tagggctagaaatgagtcgagtcgagtcgaatccatctgagttcgactcgactcggtaagaattgactcggctcgaaa-----ctcgagttcgatacgaa 11055879  T
Q  179 cctttgttttagctcgagttcggctcgttttaagtttacgagcaactcgg 228  Q
    || || | ||  ||||||||| |||| ||| ||||| |||| ||||||||    
T  11055878 ccattttcttgactcgagttcagctcatttaaagttcacgaacaactcgg 11055829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 236
Target Start/End: Complemental strand, 9222849 - 9222770
Alignment:
Q  157 ttcgactcgagttcgatacgaacctttgttttagctcgagttcggctcgttttaagtttacgagcaactcggctcgactc 236  Q
    |||| ||||||||  | |||||||||| ||||||||||||||||||| |||| ||||| | || | |||||| |||||||    
T  9222849 ttcggctcgagtttcaaacgaaccttttttttagctcgagttcggcttgtttaaagttcatgaaccactcggttcgactc 9222770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 134
Target Start/End: Original strand, 36543314 - 36543369
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcga 134  Q
    ||||||| |||||||||| ||||||||||||| | |||||| |||||||| |||||    
T  36543314 tagggctagaaatgagtcgagtcgaaccgaacgtatctgagctcggctcgactcga 36543369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 142
Target Start/End: Complemental strand, 50147487 - 50147424
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaatt 142  Q
    ||||||||||||||||   ||||||| ||||||||| |||||||| ||||||||| | ||||||    
T  50147487 tagggctggaaatgagctgagtcgaatcgaacctgtttgagttcgactcggctcgttaagaatt 50147424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 179
Target Start/End: Complemental strand, 5769838 - 5769796
Alignment:
Q  137 agaattagttcggctcgaaattcgactcgagttcgatacgaac 179  Q
    |||| ||||||||||||||| ||||||||| ||||||||||||    
T  5769838 agaaatagttcggctcgaaactcgactcgaattcgatacgaac 5769796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 219
Target Start/End: Original strand, 36543365 - 36543434
Alignment:
Q  150 ctcgaaattcgactcgagttcgatacgaacctttgttttagctcgagttcggctcgttttaagtttacga 219  Q
    ||||||| ||| ||||||||||| || |||  || ||| |||||||||||||||||||| ||||| ||||    
T  36543365 ctcgaaactcggctcgagttcgacacaaactattttttcagctcgagttcggctcgtttaaagttcacga 36543434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 79 - 228
Target Start/End: Original strand, 5418043 - 5418192
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    |||||||||||||||||| ||||||  ||||| ||||||||||||||| | |||||| |||||| ||||||||||||| ||||||||||||| | |||||    
T  5418043 tagggctggaaatgagtcgagtcgagtcgaacttgtctgagttcggcttgactcgataagaattggttcggctcgaaactcgactcgagttcaaaacgaa 5418142  T
Q  179 cctttgttttagctcgagttcggctcgttttaagtttacgagcaactcgg 228  Q
    ||||| |||  |||||| ||| |||||||| ||||| |||||||||||||    
T  5418143 cctttttttgggctcgatttcagctcgtttaaagttcacgagcaactcgg 5418192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 79 - 219
Target Start/End: Complemental strand, 39471219 - 39471079
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    |||||||||||||||||| |||||||||||||||||||||  |||||||| |||||| |||||| ||||||||||||| ||| ||||||||||| |||||    
T  39471219 tagggctggaaatgagtcgagtcgaaccgaacctgtctgaactcggctcgactcgataagaattggttcggctcgaaactcggctcgagttcgacacgaa 39471120  T
Q  179 cctttgttttagctcgagttcggctcgttttaagtttacga 219  Q
    |  || ||| ||||||||||| |||||||| ||||| ||||    
T  39471119 ctattttttcagctcgagttcagctcgtttaaagttcacga 39471079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 79 - 220
Target Start/End: Original strand, 30740732 - 30740873
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    |||||||||||||||||| ||||||||||||| |||||||| |   || | |||||| |||| | ||| ||||||||| ||||||||||||||| |||||    
T  30740732 tagggctggaaatgagtcgagtcgaaccgaacttgtctgagctttacttgactcgataagaaatggtttggctcgaaactcgactcgagttcgacacgaa 30740831  T
Q  179 cctttgttttagctcgagttcggctcgttttaagtttacgag 220  Q
    ||||| |||||||||||||||||||||||| ||||| |||||    
T  30740832 ccttttttttagctcgagttcggctcgtttaaagttcacgag 30740873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 79 - 236
Target Start/End: Original strand, 25252874 - 25253031
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    ||||||| |||||||||| ||||||  |||||||||||||| ||  |||| |||||| |||||| ||||||||| ||| ||||||||||||| |||||||    
T  25252874 tagggctagaaatgagtcgagtcgagtcgaacctgtctgagctcaactcgactcgataagaattggttcggctcaaaactcgactcgagttcaatacgaa 25252973  T
Q  179 cctttgttttagctcgagttcggctcgttttaagtttacgagcaactcggctcgactc 236  Q
    | |||  || |||||||||||||||||||| ||||| |||| || |||| ||||||||    
T  25252974 ctttttgttaagctcgagttcggctcgtttaaagttcacgaacagctcgactcgactc 25253031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 79 - 219
Target Start/End: Original strand, 33895916 - 33896056
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    ||||| || ||||||||||||||||||||||| |||||||| ||| |||| ||| || |||| | |||| |||| ||| ||||||||||||||| |||||    
T  33895916 tagggttgaaaatgagtcaagtcgaaccgaacttgtctgagctcgactcgactcaataagaaatggttcagctccaaactcgactcgagttcgacacgaa 33896015  T
Q  179 cctttgttttagctcgagttcggctcgttttaagtttacga 219  Q
    ||||| ||||||||||| |||||||||||| ||||| ||||    
T  33896016 ccttttttttagctcgaattcggctcgtttaaagttcacga 33896056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 79 - 214
Target Start/End: Original strand, 52198776 - 52198911
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||  ||||  | ||||||||||| ||||||||||||||| |||||    
T  52198776 tagggctggaaatgagtcgagtcgaaccgaacctgtctgagctcggctcgactcgatatgaatctgctcggctcgaaactcgactcgagttcgacacgaa 52198875  T
Q  179 cctttgttttagctcgagttcggctcgttttaagtt 214  Q
    |  || ||| ||||||| || | ||||||| |||||    
T  52198876 ctcttttttcagctcgaatttgactcgtttaaagtt 52198911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 82 - 219
Target Start/End: Complemental strand, 38644361 - 38644225
Alignment:
Q  82 ggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaacct 181  Q
    ||||||||||||||  |||||||||||||||||||||| |||||||| || ||| |||||| ||||||||| ||| ||||||||||||||| ||||| ||    
T  38644361 ggctggaaatgagtggagtcgaaccgaacctgtctgagctcggctcgactagataagaatttgttcggctcaaaactcgactcgagttcgacacgaa-ct 38644263  T
Q  182 ttgttttagctcgagttcggctcgttttaagtttacga 219  Q
    || ||| ||||||| |||| || |||| ||||| ||||    
T  38644262 ttttttcagctcgaattcgacttgtttaaagttcacga 38644225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 87 - 219
Target Start/End: Original strand, 32688567 - 32688699
Alignment:
Q  87 gaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaacctttgtt 186  Q
    |||||||||| ||| |||||||| ||||||||| |||||||| |||||| | |||| ||||||||||||| ||  |||||||| || | ||||  || ||    
T  32688567 gaaatgagtcgagttgaaccgaatctgtctgagctcggctcgactcgataaaaattggttcggctcgaaactcagctcgagtttgacatgaactattttt 32688666  T
Q  187 ttagctcgagttcggctcgttttaagtttacga 219  Q
    | |||||||||||||||||||| ||||| ||||    
T  32688667 tcagctcgagttcggctcgtttaaagttcacga 32688699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 78 - 172
Target Start/End: Original strand, 39133777 - 39133871
Alignment:
Q  78 ttagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcga 172  Q
    ||||||||| |||||| || |||||||| ||||||||||||| || ||||| |||||| |||||| ||||||||||||| ||| |||||||||||    
T  39133777 ttagggctgaaaatgattcgagtcgaactgaacctgtctgagctcagctcgactcgataagaattggttcggctcgaaactcggctcgagttcga 39133871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 79 - 200
Target Start/End: Complemental strand, 20407890 - 20407769
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    |||| ||| ||||||||| ||||||  | ||| ||| |||| |||||||| |||||| || ||| ||||||||||||| |||||||||||||||||||||    
T  20407890 taggactgaaaatgagtcgagtcgagtccaacgtgtttgagctcggctcgactcgataagtattggttcggctcgaaactcgactcgagttcgatacgaa 20407791  T
Q  179 cctttgttttagctcgagttcg 200  Q
    | ||| | ||||||| ||||||    
T  20407790 cttttttcttagctcaagttcg 20407769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 76 - 208
Target Start/End: Complemental strand, 46294380 - 46294248
Alignment:
Q  76 ctttagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatac 175  Q
    ||||||||||||||||||||| ||||||  |||||  ||||||| |||||||| | | || |||||| |||| | |||||| |||||||||| | || ||    
T  46294380 ctttagggctggaaatgagtcgagtcgagtcgaactcgtctgagctcggctcgacgcaataagaattggttcagttcgaaactcgactcgagattgacac 46294281  T
Q  176 gaacctttgttttagctcgagttcggctcgttt 208  Q
    ||||  || ||||||||||||||| ||||||||    
T  46294280 gaactctttttttagctcgagttcagctcgttt 46294248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 81 - 236
Target Start/End: Original strand, 40942902 - 40943051
Alignment:
Q  81 gggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaacc 180  Q
    |||||||||||||||| ||||||| |     |||||||| ||| |||  |||||| |||||| ||||| ||||||| ||| ||||||||| | |||||||    
T  40942902 gggctggaaatgagtcgagtcgaatc-----tgtctgagctcgactcaactcgataagaattggttcgactcgaaactcggctcgagttcaaaacgaacc 40942996  T
Q  181 tttgttttagctcgagttcggctcgttttaagtttacgagcaactcggctcgactc 236  Q
    ||| || ||||||||||||||||| ||| ||||| |||| | |||||| |||||||    
T  40942997 ttt-ttctagctcgagttcggctcatttaaagttcacgaaccactcggttcgactc 40943051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 79 - 154
Target Start/End: Original strand, 41609314 - 41609389
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcga 154  Q
    |||||||||||||||||| |||||||||||||||| ||||| |||||||| |||||| |||||| ||||| |||||    
T  41609314 tagggctggaaatgagtcgagtcgaaccgaacctgcctgagctcggctcgactcgataagaattggttcgactcga 41609389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 79 - 219
Target Start/End: Original strand, 7029135 - 7029274
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    |||||||||||||||||| |||| |  |||||   |||||||||| |||| |||||| |||||| |||| |||||||| ||| ||||||||||| |||||    
T  7029135 tagggctggaaatgagtcgagtccagtcgaactcatctgagttcgactcgactcgataagaatttgttcagctcgaaactcggctcgagttcgacacgaa 7029234  T
Q  179 cctttgttttagctcgagttcggctcgttttaagtttacga 219  Q
      ||| ||| || |  |||||||||||||| ||||||||||    
T  7029235 -ttttttttaagtttaagttcggctcgtttaaagtttacga 7029274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 157 - 236
Target Start/End: Complemental strand, 54432953 - 54432874
Alignment:
Q  157 ttcgactcgagttcgatacgaacctttgttttagctcgagttcggctcgttttaagtttacgagcaactcggctcgactc 236  Q
    |||| ||||||||| | |||||||||| |||||||||||||||||||||||| || || |||| |||||||| |||||||    
T  54432953 ttcggctcgagttcaaaacgaaccttttttttagctcgagttcggctcgtttaaaattcacgaacaactcggttcgactc 54432874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 115 - 228
Target Start/End: Original strand, 12710096 - 12710209
Alignment:
Q  115 ctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaacctttgtt-ttagctcgagttcggctcgttttaagt 213  Q
    ||||| ||| |||| |||||| |||||| || |||||||||| |||||||||||| || |||||||||| || ||| |||||||||||||||||| ||||    
T  12710096 ctgagctcgactcgactcgataagaattggt-cggctcgaaactcgactcgagtttgaaacgaaccttttttcttaactcgagttcggctcgtttaaagt 12710194  T
Q  214 ttacgagcaactcgg 228  Q
    |  ||| ||||||||    
T  12710195 tcgcgaacaactcgg 12710209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 79 - 214
Target Start/End: Complemental strand, 27040684 - 27040549
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    |||||||||||||||||| ||||||  ||||| ||| |||| ||  |||| |||| | ||| || ||||||||||||| |||||||||||||  ||| ||    
T  27040684 tagggctggaaatgagtcgagtcgagtcgaacttgtttgagctcaactcgactcgttaagatttggttcggctcgaaactcgactcgagttcattacaaa 27040585  T
Q  179 cctttgttttagctcgagttcggctcgttttaagtt 214  Q
    | ||| ||||||||| | |||| |||| || |||||    
T  27040584 cttttattttagctcaaattcgactcggttgaagtt 27040549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 124 - 236
Target Start/End: Complemental strand, 19561502 - 19561390
Alignment:
Q  124 gctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaacctttgttttagctcgagttcggctcgttttaagtttacgagcaa 223  Q
    ||||| |||||| ||||||||||  | || ||| |||| ||||||||||||| ||| ||| ||| |||| |||||||| |||||| |||||  ||| ||     
T  19561502 gctcgactcgataagaattagtttagttcaaaactcgattcgagttcgatacaaacttttttttaagcttgagttcggttcgtttaaagttatcgaacag 19561403  T
Q  224 ctcggctcgactc 236  Q
    |||||||||||||    
T  19561402 ctcggctcgactc 19561390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 127
Target Start/End: Complemental strand, 23207040 - 23206992
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctc 127  Q
    |||||||| ||||||||| |||||||||||||||||||||| |||||||    
T  23207040 tagggctgaaaatgagtcgagtcgaaccgaacctgtctgagctcggctc 23206992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 227
Target Start/End: Original strand, 51067744 - 51067840
Alignment:
Q  131 tcgattagaattagttcggctcgaaattcgactcgagttcgatacgaacctttgttttagctcgagttcggctcgttttaagtttacgagcaactcg 227  Q
    ||||| |||||||||||||||||||| || |||||| |||||||| || | || |||| ||||||||||| ||| ||| || || |||| |||||||    
T  51067744 tcgataagaattagttcggctcgaaactcaactcgacttcgatacaaatcatttttttggctcgagttcgactcatttaaaattaacgaacaactcg 51067840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 198
Target Start/End: Complemental strand, 7521875 - 7521761
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    ||||| || ||||||||| ||||||||||||| | ||||||     || | |||||| | |||| ||||||||||||| ||||||||||||||| |||||    
T  7521875 tagggttgaaaatgagtcgagtcgaaccgaacttatctgag-----ctagactcgataaaaattcgttcggctcgaaactcgactcgagttcgaaacgaa 7521781  T
Q  179 cctttgttttagctcgagtt 198  Q
     |||| ||||| ||| ||||    
T  7521780 tcttttttttaactcaagtt 7521761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 214
Target Start/End: Complemental strand, 30662898 - 30662768
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    |||||||||||||||||| |||      ||||||||||||| |||  ||| |||||| ||||||  ||||| |||||| || ||||||||| || || ||    
T  30662898 tagggctggaaatgagtcgagt-----tgaacctgtctgagctcgattcgactcgataagaattgattcggttcgaaactcaactcgagtttgaaacaaa 30662804  T
Q  179 cctttgttttagctcgagttcggctcgttttaagtt 214  Q
    ||||| ||||| ||| |||| ||||||||| |||||    
T  30662803 ccttttttttaactcaagtttggctcgtttaaagtt 30662768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 180
Target Start/End: Original strand, 52934231 - 52934327
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    |||||||||||||||||| ||||||| | |     |||||| ||| |||| |||||| ||||||   ||||||||||| |||||| ||||||||||||||    
T  52934231 tagggctggaaatgagtcgagtcgaatcca-----tctgagctcgactcgactcgataagaattgactcggctcgaaactcgacttgagttcgatacgaa 52934325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 208
Target Start/End: Complemental strand, 15823275 - 15823191
Alignment:
Q  124 gctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaacctttgttttagctcgagttcggctcgttt 208  Q
    |||||||||||| | | || | ||||||||||| ||||||||||||||| | ||||  || ||| |||||||||||| |||||||    
T  15823275 gctcggctcgataaaattttgctcggctcgaaactcgactcgagttcgacatgaactcttttttcagctcgagttcgactcgttt 15823191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 54394182 - 54394138
Alignment:
Q  78 ttagggctggaaatgagtcaagtcgaaccgaacctgtctgagttc 122  Q
    |||||| |||||||||||| ||||||| |||||||||||||||||    
T  54394182 ttagggttggaaatgagtcgagtcgaatcgaacctgtctgagttc 54394138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 208
Target Start/End: Original strand, 41609380 - 41609431
Alignment:
Q  157 ttcgactcgagttcgatacgaacctttgttttagctcgagttcggctcgttt 208  Q
    |||||||||||||||| ||||||  || ||| ||||||||||||||||||||    
T  41609380 ttcgactcgagttcgacacgaactattttttcagctcgagttcggctcgttt 41609431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 228
Target Start/End: Complemental strand, 26050195 - 26050123
Alignment:
Q  158 tcgactcgagttcgatacgaacctttgtttt--agctcgagttcggctcgttttaagtttacgagcaactcgg 228  Q
    |||||||||||| || |||||||||| ||||  | |||||||||||||||||| |||||  ||| ||||||||    
T  26050195 tcgactcgagtttgaaacgaaccttttttttttaactcgagttcggctcgtttaaagttcgcgaacaactcgg 26050123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 227
Target Start/End: Complemental strand, 33152139 - 33152050
Alignment:
Q  138 gaattagttcggctcgaaattcgactcgagttcgatacgaacctttgttttagctcgagttcggctcgttttaagtttacgagcaactcg 227  Q
    ||||| ||||||||||||| |||||| |||||||| || ||| ||| ||| | ||  |||||||||  ||| |||||||||| |||||||    
T  33152139 gaatttgttcggctcgaaactcgacttgagttcgaaacaaacatttttttcaacttaagttcggcttatttaaagtttacgaacaactcg 33152050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 7e-36; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 79 - 219
Target Start/End: Original strand, 10346212 - 10346352
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    ||||||| |||||||||||||||||||||||||||| |||| ||||||||  ||||| |||||| ||||||||||||| ||| ||||||||||| |||||    
T  10346212 tagggctagaaatgagtcaagtcgaaccgaacctgtttgagctcggctcgattcgataagaattggttcggctcgaaactcggctcgagttcgacacgaa 10346311  T
Q  179 cctttgttttagctcgagttcggctcgttttaagtttacga 219  Q
    |  || ||| |||||||||||||||||||| ||||| ||||    
T  10346312 ctattttttcagctcgagttcggctcgtttaaagttcacga 10346352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 78 - 219
Target Start/End: Original strand, 7957053 - 7957194
Alignment:
Q  78 ttagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacga 177  Q
    ||||||||||||||||||| |||||| ||||||||||||||| |||||||| |||||| |||||| ||||||||||||| ||| ||||||||| | ||||    
T  7957053 ttagggctggaaatgagtcgagtcgacccgaacctgtctgagctcggctcgactcgataagaattggttcggctcgaaactcggctcgagttcaacacga 7957152  T
Q  178 acctttgttttagctcgagttcggctcgttttaagtttacga 219  Q
    ||  || ||| ||||||||||| |||||||| ||||| ||||    
T  7957153 actattttttcagctcgagttcagctcgtttaaagttcacga 7957194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 73 - 225
Target Start/End: Original strand, 7436694 - 7436845
Alignment:
Q  73 tagctttagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcga 172  Q
    ||||| |||||||| |||| |||| ||||||| |||||||||||||| ||| |||| |||||| |||| | ||||||||||||| || ||||||||| ||    
T  7436694 tagctctagggctgaaaataagtcgagtcgaatcgaacctgtctgagctcgactcgactcgataagaaatggttcggctcgaaactccactcgagtttga 7436793  T
Q  173 tacgaacctttgttttagctcgagttcggctcgttttaagtttacgagcaact 225  Q
     |||||||||| ||| | |||||||||||||||||| ||||| ||||||||||    
T  7436794 aacgaaccttt-tttcaactcgagttcggctcgtttaaagttcacgagcaact 7436845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 92 - 227
Target Start/End: Original strand, 33109845 - 33109980
Alignment:
Q  92 gagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaacctttgttttagc 191  Q
    ||||| ||||||  ||||| |||||||| |||||||| |||||| |||||| ||||||||||||| ||||||||||||| | |||||||||| |||  ||    
T  33109845 gagtcgagtcgagtcgaacttgtctgagctcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcaaaacgaacctttttttgggc 33109944  T
Q  192 tcgagttcggctcgttttaagtttacgagcaactcg 227  Q
    ||||||||||||||||| ||||| | ||||||||||    
T  33109945 tcgagttcggctcgtttaaagttcatgagcaactcg 33109980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 82 - 236
Target Start/End: Complemental strand, 3082468 - 3082314
Alignment:
Q  82 ggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaacct 181  Q
    ||||||||||||||  ||||||||||||||| |||||| | | ||||  || || |||| | ||| ||||||||| |||||| |||||||| ||||||||    
T  3082468 ggctggaaatgagttgagtcgaaccgaacctatctgagcttgactcgattcaataagaaatggttgggctcgaaactcgactagagttcgaaacgaacct 3082369  T
Q  182 ttgttttagctcgagttcggctcgttttaagtttacgagcaactcggctcgactc 236  Q
    || ||| | |||||||||| ||||||||||||| ||||||||||| | |||||||    
T  3082368 ttttttcaactcgagttcgactcgttttaagttcacgagcaactcagttcgactc 3082314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 78 - 172
Target Start/End: Original strand, 6998575 - 6998669
Alignment:
Q  78 ttagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcga 172  Q
    ||||| ||||||||||||| |||||||||||||||||||||| |||||||| |||||| |||||| | ||||||||||| |||||||||||||||    
T  6998575 ttaggactggaaatgagtcgagtcgaaccgaacctgtctgagctcggctcgactcgataagaatttgctcggctcgaaactcgactcgagttcga 6998669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 83 - 219
Target Start/End: Original strand, 18961849 - 18961985
Alignment:
Q  83 gctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaacctt 182  Q
    |||||||||||||| |||| || |||||||| ||||| |||||||| |||||| |||||| ||||||||||||| ||| ||||||||||| || |||  |    
T  18961849 gctggaaatgagtcgagtcaaatcgaacctgcctgagctcggctcgactcgataagaattggttcggctcgaaactcggctcgagttcgacacaaactat 18961948  T
Q  183 tgttttagctcgagttcggctcgttttaagtttacga 219  Q
    | ||| ||| |||||||| ||||||| ||||| ||||    
T  18961949 tttttcagcccgagttcgactcgtttaaagttcacga 18961985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 130 - 228
Target Start/End: Complemental strand, 9463784 - 9463687
Alignment:
Q  130 ctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaacctttgttttagctcgagttcggctcgttttaagtttacgagcaactcgg 228  Q
    ||||||||||||| |||| ||| |||| || |||||||||| | || ||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  9463784 ctcgattagaattggttcagcttgaaactcaactcgagttcaaaacaaaccttt-ttttagctcgagttcggctcgttttaagtttacgagtaactcgg 9463687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 124 - 236
Target Start/End: Original strand, 12428088 - 12428200
Alignment:
Q  124 gctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaacctttgttttagctcgagttcggctcgttttaagtttacgagcaa 223  Q
    ||||| |||||| ||||||  |||||||||||| |||||||||||||||||||||| |||  || |||||||||||| ||||||| |||||||||| ||     
T  12428088 gctcgactcgataagaattgattcggctcgaaactcgactcgagttcgatacgaactttttgttaagctcgagttcgactcgtttaaagtttacgaacag 12428187  T
Q  224 ctcggctcgactc 236  Q
     ||| ||||||||    
T  12428188 ttcgactcgactc 12428200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 106 - 228
Target Start/End: Original strand, 22295383 - 22295505
Alignment:
Q  106 cgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaacctttgttttagctcgagttcggctcg 205  Q
    ||||| ||||| || |||||||  ||||||||||||| ||||||||||||| ||||||||||||||| || ||| ||| ||   |||||||||||||||     
T  22295383 cgaacttgtcttagctcggctcaactcgattagaattggttcggctcgaaactcgactcgagttcgaaacaaactttttttccggctcgagttcggctca 22295482  T
Q  206 ttttaagtttacgagcaactcgg 228  Q
    ||| || || |||||||||||||    
T  22295483 tttaaaattcacgagcaactcgg 22295505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 79 - 172
Target Start/End: Complemental strand, 4442135 - 4442042
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcga 172  Q
    |||| ||||||||||||| |||||||||||||||||||||| ||  |||| |||||| ||||||| |||||||||||| || |||| |||||||    
T  4442135 taggtctggaaatgagtcgagtcgaaccgaacctgtctgagctcaactcgactcgataagaattaattcggctcgaaactcaactcaagttcga 4442042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 111 - 236
Target Start/End: Original strand, 13311380 - 13311505
Alignment:
Q  111 ctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaacctttgttttagctcgagttcggctcgtttta 210  Q
    ||||||||| ||| |||| |||||| |||||| ||||| ||| ||| |||  |||||||||| |||||||||| || ||||||||||||||||||||| |    
T  13311380 ctgtctgagctcgactcgactcgataagaattggttcgactcaaaactcggttcgagttcgaaacgaaccttttttctagctcgagttcggctcgtttaa 13311479  T
Q  211 agtttacgagcaactcggctcgactc 236  Q
    |||| |||| | |||||  |||||||    
T  13311480 agttcacgaaccactcgattcgactc 13311505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 123
Target Start/End: Complemental strand, 9951529 - 9951486
Alignment:
Q  80 agggctggaaatgagtcaagtcgaaccgaacctgtctgagttcg 123  Q
    ||||||||||||||||||||||||| ||||| ||||| ||||||    
T  9951529 agggctggaaatgagtcaagtcgaatcgaacttgtctaagttcg 9951486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 219
Target Start/End: Original strand, 472826 - 472966
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    ||||| || ||||||||| ||||||| | ||  ||| |||| ||| |||| || ||| |||||| | || | | |||| ||||||| ||||||| |||||    
T  472826 tagggatgtaaatgagtcgagtcgaatcaaatatgtatgagctcgactcgacttgataagaatttgctcagtttgaaactcgactcaagttcgacacgaa 472925  T
Q  179 cctttgttttagctcgagttcggctcgttttaagtttacga 219  Q
    |  || ||| |||||||||||| ||||||| ||||| ||||    
T  472926 ctcttttttcagctcgagttcgactcgtttaaagttcacga 472966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 7e-36; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 79 - 219
Target Start/End: Original strand, 20986064 - 20986204
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    |||| ||||||||||||| |||||||||||||||||||||| |||||||| |||||| |||||| ||||||||||||| ||| || |||||||| |||||    
T  20986064 taggactggaaatgagtcgagtcgaaccgaacctgtctgagctcggctcgactcgataagaattggttcggctcgaaactcggcttgagttcgacacgaa 20986163  T
Q  179 cctttgttttagctcgagttcggctcgttttaagtttacga 219  Q
    |  || ||| |||||||||||||||||||| ||||| ||||    
T  20986164 ctattttttcagctcgagttcggctcgtttaaagttcacga 20986204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 79 - 219
Target Start/End: Original strand, 36538077 - 36538217
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    |||||||||||||||||| |||||||| ||||||||||||| |||||||| |||||| |||||| ||||||||||||| ||| ||||||||||| |||||    
T  36538077 tagggctggaaatgagtcgagtcgaactgaacctgtctgagctcggctcgactcgataagaattggttcggctcgaaactcggctcgagttcgacacgaa 36538176  T
Q  179 cctttgttttagctcgagttcggctcgttttaagtttacga 219  Q
    |  || ||| |||||||||| ||||||||| ||||| ||||    
T  36538177 ctattttttcagctcgagtttggctcgtttaaagttcacga 36538217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 78 - 228
Target Start/End: Complemental strand, 2647741 - 2647591
Alignment:
Q  78 ttagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacga 177  Q
    ||||||||||||||||||| ||||||  ||||  |||||||  |||||||| |||||| |||||| ||||||||||||| ||||||||||||| | || |    
T  2647741 ttagggctggaaatgagtcgagtcgagtcgaatttgtctgaactcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcaaaacca 2647642  T
Q  178 acctttgttttagctcgagttcggctcgttttaagtttacgagcaactcgg 228  Q
    |||||| |||  ||||||||||||||||||| ||||| |||||||||||||    
T  2647641 acctttttttgggctcgagttcggctcgtttaaagttcacgagcaactcgg 2647591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 79 - 219
Target Start/End: Original strand, 27633142 - 27633282
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    |||||||||||||||||| |||||||||||||||| ||||| |||||||| || ||| |||||| ||||||||||||| ||| ||| ||||| | || ||    
T  27633142 tagggctggaaatgagtcgagtcgaaccgaacctgcctgagctcggctcgacttgataagaattggttcggctcgaaactcggctcaagttcaacacaaa 27633241  T
Q  179 cctttgttttagctcgagttcggctcgttttaagtttacga 219  Q
    |  || ||| |||||||||||||||||||| ||||| ||||    
T  27633242 ctattttttcagctcgagttcggctcgtttaaagttcacga 27633282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 130 - 228
Target Start/End: Complemental strand, 3409938 - 3409840
Alignment:
Q  130 ctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaacctttgttttagctcgagttcggctcgttttaagtttacgagcaactcgg 228  Q
    |||||| |||||||| |||||| |||| |||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||| |||| | ||||||    
T  3409938 ctcgataagaattagctcggcttgaaactcgactcgagttcgatacgaaccttttttttaactcgagttcggctcgtttaaagttcacgaactactcgg 3409840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 107 - 219
Target Start/End: Original strand, 12139394 - 12139506
Alignment:
Q  107 gaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaacctttgttttagctcgagttcggctcgt 206  Q
    ||||||||||||| |||| ||| |||||| |||||| ||||||||||||| ||| ||||||||||| ||||||  || ||| ||||||||||||||||||    
T  12139394 gaacctgtctgagctcggttcgactcgataagaattggttcggctcgaaactcggctcgagttcgacacgaactattttttcagctcgagttcggctcgt 12139493  T
Q  207 tttaagtttacga 219  Q
    || ||||| ||||    
T  12139494 ttaaagttcacga 12139506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 79 - 219
Target Start/End: Complemental strand, 44741436 - 44741296
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    ||||| |||||||||||  ||| |||||||||||||||||| |||||||| || ||| |||||| | ||||||||||| ||||||||||||||| |||||    
T  44741436 tagggttggaaatgagttgagttgaaccgaacctgtctgagctcggctcgacttgataagaatttgctcggctcgaaactcgactcgagttcgacacgaa 44741337  T
Q  179 cctttgttttagctcgagttcggctcgttttaagtttacga 219  Q
    |  || ||| ||||| | |||| ||||||| ||||| ||||    
T  44741336 ctcttttttcagctcaaattcgactcgtttaaagttcacga 44741296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 79 - 219
Target Start/End: Original strand, 41958542 - 41958687
Alignment:
Q  79 tagggctggaaatgagtcaagtcga-----accgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgat 173  Q
    |||||||||||||||||| ||||||     |||||||||| | ||| |||| ||| |||||| | |||| ||||||||||||| ||| |||||||||||     
T  41958542 tagggctggaaatgagtcgagtcgagttgaaccgaacctgcccgagctcggttcgactcgataaaaattggttcggctcgaaactcggctcgagttcgac 41958641  T
Q  174 acgaacctttgttttagctcgagttcggctcgttttaagtttacga 219  Q
    ||||||  || ||| |||||||||||||||||||| ||||| ||||    
T  41958642 acgaactattttttcagctcgagttcggctcgtttaaagttcacga 41958687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 79 - 154
Target Start/End: Original strand, 33830890 - 33830965
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcga 154  Q
    ||||| |||||||||||| |||||||||||||||||||||| |||||||| |||||| |||||| |||||||||||    
T  33830890 tagggttggaaatgagtcgagtcgaaccgaacctgtctgagctcggctcgactcgataagaattggttcggctcga 33830965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 78 - 228
Target Start/End: Original strand, 18667124 - 18667272
Alignment:
Q  78 ttagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacga 177  Q
    |||||| ||||||||| || ||||||| |||||  ||||||| | |||||| |||||| |||||   |||||||||||| | ||||||||||||| || |    
T  18667124 ttagggttggaaatgaatcgagtcgaatcgaactcgtctgagcttggctcgactcgataagaatagcttcggctcgaaacttgactcgagttcgaaacaa 18667223  T
Q  178 acctttgttttagctcgagttcggctcgttttaagtttacgagcaactcgg 228  Q
    |  ||| ||| ||||| |||| ||||||||| ||||||||||| |||||||    
T  18667224 a--tttttttcagctcaagtttggctcgtttaaagtttacgagtaactcgg 18667272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 82 - 228
Target Start/End: Original strand, 26435770 - 26435916
Alignment:
Q  82 ggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaacct 181  Q
    ||||| ||||||||| |||||||||||| ||||||||| ||||||||  ||||| |||||| |||||| |||||| |||  |||||||||| |||||       
T  26435770 ggctgaaaatgagtcgagtcgaaccgaatctgtctgagctcggctcgattcgataagaattggttcggttcgaaactcggttcgagttcgacacgaaata 26435869  T
Q  182 ttgttttagctcgagttcggctcgttttaagtttacgagcaactcgg 228  Q
    || ||| | |||||||||| || |||| ||||| |||| ||| ||||    
T  26435870 ttttttcaactcgagttcgacttgtttaaagttcacgaacaattcgg 26435916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 114 - 208
Target Start/End: Original strand, 39801156 - 39801250
Alignment:
Q  114 tctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaacctttgttttagctcgagttcggctcgttt 208  Q
    |||||| |||||||| |||||  ||||||||||| |||||||||||| ||||||||||| ||||||  || ||| ||||||||||| ||||||||    
T  39801156 tctgagctcggctcgactcgagaagaattagttcagctcgaaattcggctcgagttcgacacgaactcttttttcagctcgagttcagctcgttt 39801250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 131 - 228
Target Start/End: Original strand, 40675217 - 40675314
Alignment:
Q  131 tcgattagaattagttcggctcgaaattcgactcgagttcgatacgaacctttgttttagctcgagttcggctcgttttaagtttacgagcaactcgg 228  Q
    ||||| |||||| ||||||||||||| ||||||||||||||||||||||| || ||||| ||| | || ||||||||| ||||| || | ||||||||    
T  40675217 tcgataagaattggttcggctcgaaactcgactcgagttcgatacgaaccatttttttaactcaaatttggctcgtttaaagttcacaaacaactcgg 40675314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 79 - 208
Target Start/End: Original strand, 29804266 - 29804392
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    ||||||||||||||||   ||| ||||||||||| | |||| | | || | |||||| | |||| ||||||||||||| ||||||| ||||||| | |||    
T  29804266 tagggctggaaatgag---agttgaaccgaacctatttgagcttgacttgactcgataaaaattggttcggctcgaaactcgactcaagttcgaaatgaa 29804362  T
Q  179 cctttgttttagctcgagttcggctcgttt 208  Q
    ||||| | ||| ||||||||||||||||||    
T  29804363 cctttttcttaactcgagttcggctcgttt 29804392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 145 - 236
Target Start/End: Original strand, 40458398 - 40458489
Alignment:
Q  145 ttcggctcgaaattcgactcgagttcgatacgaacctttgttttagctcgagttcggctcgttttaagtttacgagcaactcggctcgactc 236  Q
    |||||||| ||| ||||||||||||||| |||||| ||| ||| | |||||||||||||||||| || || |||||||| |||| |||||||    
T  40458398 ttcggctcaaaactcgactcgagttcgaaacgaacatttttttcaactcgagttcggctcgtttaaaattcacgagcaattcggttcgactc 40458489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 154
Target Start/End: Complemental strand, 33164691 - 33164617
Alignment:
Q  80 agggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcga 154  Q
    ||||||||||||||||| |||||||||||| |||||||| || |||||| |||||| | |||| |||||||||||    
T  33164691 agggctggaaatgagtcgagtcgaaccgaatctgtctgaatttggctcgactcgataaaaattggttcggctcga 33164617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 78 - 219
Target Start/End: Original strand, 11027286 - 11027427
Alignment:
Q  78 ttagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacga 177  Q
    ||||||||||||||||||| ||||||| ||||| |||||||||||| |||  |||  | |||||| |||||| |||||  |||  ||||||| || ||||    
T  11027286 ttagggctggaaatgagtcgagtcgaatcgaacttgtctgagttcgactcaactcattaagaatttgttcggttcgaacctcggatcgagtttgacacga 11027385  T
Q  178 acctttgttttagctcgagttcggctcgttttaagtttacga 219  Q
    || ||| ||  | ||| |||||||||||||| ||||| ||||    
T  11027386 actttttttccaactcaagttcggctcgtttaaagttcacga 11027427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 134
Target Start/End: Original strand, 1093914 - 1093969
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcga 134  Q
    |||||||||||||||||| ||||||  |||||||||||||||||| |||| |||||    
T  1093914 tagggctggaaatgagtcgagtcgagtcgaacctgtctgagttcgactcgactcga 1093969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 78 - 204
Target Start/End: Original strand, 41648742 - 41648868
Alignment:
Q  78 ttagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacga 177  Q
    ||||||||| ||||||||| ||||||  |||| ||||||||||| | ||   |||||| | |||| |||| |||| ||||||||||||||||  | || |    
T  41648742 ttagggctgaaaatgagtcgagtcgagtcgaaactgtctgagtttgacttaactcgataaaaattggttcagctcaaaattcgactcgagtttaaaacaa 41648841  T
Q  178 acctttgttttagctcgagttcggctc 204  Q
    | |||| ||| |||| |||||||||||    
T  41648842 atctttttttaagcttgagttcggctc 41648868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 1093961 - 1094017
Alignment:
Q  158 tcgactcgagttcgatacgaacctttgttttagctcgagttcggctcgttttaagtt 214  Q
    |||||||||||| || |||||||||| ||||| || ||||||||||||||| |||||    
T  1093961 tcgactcgagtttgaaacgaaccttttttttaacttgagttcggctcgtttaaagtt 1094017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 128
Target Start/End: Original strand, 30711471 - 30711517
Alignment:
Q  82 ggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcg 128  Q
    ||||||||||||||||||| ||| |||||||||||||| ||| ||||    
T  30711471 ggctggaaatgagtcaagttgaatcgaacctgtctgagctcgactcg 30711517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 228
Target Start/End: Original strand, 33830961 - 33831027
Alignment:
Q  162 ctcgagttcgatacgaacctttgttttagctcgagttcggctcgttttaagtttacgagcaactcgg 228  Q
    ||||||||||| ||||||  || ||| |||||||||||||||||||| ||||| |||| ||| ||||    
T  33830961 ctcgagttcgacacgaactattttttcagctcgagttcggctcgtttaaagttcacgaacaattcgg 33831027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 179
Target Start/End: Original strand, 29478042 - 29478143
Alignment:
Q  78 ttagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacga 177  Q
    ||||||||||||||||| | |||| | ||||||  ||||||| || | ||| ||| || ||| || ||||||||| ||| |||||| || ||||||||||    
T  29478042 ttagggctggaaatgagacgagtcaagccgaactcgtctgagctcagttcgactcaataagatttggttcggctcaaaactcgacttgatttcgatacga 29478141  T
Q  178 ac 179  Q
    ||    
T  29478142 ac 29478143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 119
Target Start/End: Complemental strand, 34116894 - 34116854
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgag 119  Q
    ||||| |||||||||||| ||||||| ||||||||||||||    
T  34116894 tagggatggaaatgagtcgagtcgaatcgaacctgtctgag 34116854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 41)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 78 - 208
Target Start/End: Complemental strand, 5776706 - 5776576
Alignment:
Q  78 ttagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacga 177  Q
    ||||||||||||||||||| |||||||||||||||| ||||| |||||||| |||||| ||||||||||| |||||||| ||| ||||||||||| | ||    
T  5776706 ttagggctggaaatgagtcgagtcgaaccgaacctgcctgagctcggctcgactcgataagaattagttcagctcgaaactcggctcgagttcgacaaga 5776607  T
Q  178 acctttgttttagctcgagttcggctcgttt 208  Q
    ||  || ||| ||||||||||||||||||||    
T  5776606 actattttttcagctcgagttcggctcgttt 5776576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 83 - 219
Target Start/End: Original strand, 26215721 - 26215857
Alignment:
Q  83 gctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaacctt 182  Q
    |||||||||||||| |||||||||||||||| ||||| |||||||| |||||| |||||| ||||||||||||| ||| ||||||||||| ||||||  |    
T  26215721 gctggaaatgagtcgagtcgaaccgaacctgcctgagctcggctcgactcgataagaattggttcggctcgaaactcggctcgagttcgacacgaactat 26215820  T
Q  183 tgttttagctcgagttcggctcgttttaagtttacga 219  Q
    | ||| | |||||||||||||||||| ||||| ||||    
T  26215821 tttttcaactcgagttcggctcgtttaaagttcacga 26215857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 79 - 204
Target Start/End: Original strand, 36926409 - 36926534
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    |||||||||||||||||| ||||||| |||||||||||||| |||||||| |||||| |||||| ||||||||||||| ||| ||||||||||| |||||    
T  36926409 tagggctggaaatgagtcgagtcgaatcgaacctgtctgagctcggctcgactcgataagaattggttcggctcgaaactcggctcgagttcgacacgaa 36926508  T
Q  179 cctttgttttagctcgagttcggctc 204  Q
    |  || ||| | ||||||||||||||    
T  36926509 ctattttttcatctcgagttcggctc 36926534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 79 - 219
Target Start/End: Original strand, 37333697 - 37333838
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    ||||| |||||||||||| |||||||||||||||| ||||| | |||||| |||||| |||||| ||||||||||||| ||| ||||||||||||| |||    
T  37333697 tagggttggaaatgagtcgagtcgaaccgaacctgcctgagcttggctcgactcgataagaattggttcggctcgaaactcggctcgagttcgatatgaa 37333796  T
Q  179 c-ctttgttttagctcgagttcggctcgttttaagtttacga 219  Q
    |  ||| ||| |||||||||||||||||||| ||||| ||||    
T  37333797 ctatttttttcagctcgagttcggctcgtttaaagttcacga 37333838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 79 - 236
Target Start/End: Original strand, 42071520 - 42071677
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    |||||||| ||||||||| ||||||||| ||| |||||||| |||||||| ||| || |||||| ||||||||||||| ||| ||||||||||| |||||    
T  42071520 tagggctgaaaatgagtcgagtcgaaccaaacatgtctgagctcggctcgactcaataagaattggttcggctcgaaactcggctcgagttcgacacgaa 42071619  T
Q  179 cctttgttttagctcgagttcggctcgttttaagtttacgagcaactcggctcgactc 236  Q
    |  || ||| |||||||||||||||||||| ||||| |||| ||  |||| |||||||    
T  42071620 ctattttttcagctcgagttcggctcgtttaaagttcacgaacagttcggttcgactc 42071677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 79 - 219
Target Start/End: Original strand, 43052282 - 43052422
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    ||||||||||||| |||| |||||||||||||||| ||||| |||||||| |||||| |||||| ||||||||||||| | | ||||||||||| |||||    
T  43052282 tagggctggaaatcagtcgagtcgaaccgaacctgcctgagctcggctcgactcgataagaattggttcggctcgaaacttggctcgagttcgacacgaa 43052381  T
Q  179 cctttgttttagctcgagttcggctcgttttaagtttacga 219  Q
    |  || ||| |||||||||||||||| ||| ||||| ||||    
T  43052382 ctattttttcagctcgagttcggctcatttaaagttcacga 43052422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 79 - 236
Target Start/End: Complemental strand, 17026138 - 17025980
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    |||| ||||||||||||| ||||||  ||||| |||||||| ||| |||| |||||| |||||| ||||||||||||| |||||||||||| || |||||    
T  17026138 taggactggaaatgagtcgagtcgagtcgaacttgtctgagctcgactcgactcgataagaattggttcggctcgaaactcgactcgagtttgaaacgaa 17026039  T
Q  179 -cctttgttttagctcgagttcggctcgttttaagtttacgagcaactcggctcgactc 236  Q
     | ||| ||||| |||||||||||||||||| |||||  ||| |||||||| |||||||    
T  17026038 tctttttttttaactcgagttcggctcgtttaaagttcgcgaacaactcggttcgactc 17025980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 79 - 219
Target Start/End: Complemental strand, 666356 - 666216
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    |||| ||||||||||||| ||||||||||||| |||||||| |||||| | |||||| |||||| ||||||||||||| ||| ||||||||||| || ||    
T  666356 taggtctggaaatgagtcgagtcgaaccgaacatgtctgagctcggcttgactcgataagaattggttcggctcgaaactcggctcgagttcgacacaaa 666257  T
Q  179 cctttgttttagctcgagttcggctcgttttaagtttacga 219  Q
    |  || ||| ||||| |||||||||||||| ||||| ||||    
T  666256 ctattttttcagctcaagttcggctcgtttaaagttcacga 666216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 85 - 219
Target Start/End: Complemental strand, 3931483 - 3931348
Alignment:
Q  85 tggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaac-cttt 183  Q
    |||||||||||  |||| ||||||||||||||||| |||||||| |||||| |||||| ||||||||||||| ||| ||||||||||| ||||||  |||    
T  3931483 tggaaatgagttgagtccaaccgaacctgtctgagctcggctcgactcgataagaattggttcggctcgaaactcggctcgagttcgacacgaactattt 3931384  T
Q  184 gttttagctcgagttcggctcgttttaagtttacga 219  Q
     ||| ||||||||||| |||||||| ||||| ||||    
T  3931383 ttttcagctcgagttcagctcgtttaaagttcacga 3931348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 106 - 228
Target Start/End: Original strand, 45054820 - 45054942
Alignment:
Q  106 cgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaacctttgttttagctcgagttcggctcg 205  Q
    ||||| |||||||| | |||||| |||||| |||||| |||||||| |||| ||||||||||||| | |||||||||| |||  ||||||||||||||||    
T  45054820 cgaacttgtctgagcttggctcgactcgataagaattggttcggcttgaaactcgactcgagttcaaaacgaacctttttttgggctcgagttcggctcg 45054919  T
Q  206 ttttaagtttacgagcaactcgg 228  Q
    ||| ||||| |||||||||||||    
T  45054920 tttaaagttcacgagcaactcgg 45054942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 79 - 208
Target Start/End: Original strand, 7443829 - 7443958
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    ||||| |||||||||||| |||||||||||| ||||||||| |||||||| |||||| |||||| |||||| |||||| ||| ||||||||||| || ||    
T  7443829 tagggttggaaatgagtcgagtcgaaccgaatctgtctgagctcggctcgactcgataagaattggttcggttcgaaactcggctcgagttcgacacaaa 7443928  T
Q  179 cctttgttttagctcgagttcggctcgttt 208  Q
    |  || ||| ||||||||||| ||||||||    
T  7443929 ctattttttcagctcgagttcagctcgttt 7443958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 79 - 219
Target Start/End: Complemental strand, 7539791 - 7539651
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    |||||||||||||||| | ||| ||  |||||  ||||||| |||||||| |||||| |||||| |||| |||||||| ||| |||||||||||  ||||    
T  7539791 tagggctggaaatgagccgagttgagtcgaactcgtctgagctcggctcgactcgataagaattggttcagctcgaaactcggctcgagttcgactcgaa 7539692  T
Q  179 cctttgttttagctcgagttcggctcgttttaagtttacga 219  Q
      ||| ||| |||||||||||||||||||| ||||||||||    
T  7539691 tttttttttcagctcgagttcggctcgtttaaagtttacga 7539651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 77 - 228
Target Start/End: Original strand, 41449150 - 41449296
Alignment:
Q  77 tttagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacg 176  Q
    |||||||||| ||||||||| |||||||||||||   ||| ||     |||| |||||| |||||| | ||||||||||||||||||||| ||||||||     
T  41449150 tttagggctgaaaatgagtcgagtcgaaccgaactcatctaag-----ctcgactcgataagaattggctcggctcgaaattcgactcgaattcgataca 41449244  T
Q  177 aacctttgttttagctcgagttcggctcgttttaagtttacgagcaactcgg 228  Q
    ||||||| || |||||||||||| |||||||| ||||| |||| | ||||||    
T  41449245 aaccttttttctagctcgagttcagctcgtttaaagttcacgaactactcgg 41449296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 79 - 228
Target Start/End: Complemental strand, 23236917 - 23236773
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    |||||| ||||||||||| |||||||||||||   ||||||     |||| |||||| |||||||| ||||||||||| ||||||| | ||| |||||||    
T  23236917 tagggccggaaatgagtcgagtcgaaccgaactcatctgag-----ctcgactcgataagaattagctcggctcgaaactcgactcaaattcaatacgaa 23236823  T
Q  179 cctttgttttagctcgagttcggctcgttttaagtttacgagcaactcgg 228  Q
    ||||| || ||||| ||||||||||||||| ||||| |||| | ||||||    
T  23236822 ccttttttctagcttgagttcggctcgtttaaagttcacgaactactcgg 23236773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 78 - 226
Target Start/End: Original strand, 10618025 - 10618168
Alignment:
Q  78 ttagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacga 177  Q
    ||||||||| ||||||||| ||||||| ||||||||||||| || | ||||     || | |||| |||||| |||||| ||||||||||| ||||| ||    
T  10618025 ttagggctgaaaatgagtcgagtcgaatcgaacctgtctgaattggactcg-----ataaaaattggttcggttcgaaactcgactcgagtgcgatatga 10618119  T
Q  178 acctttgttttagctcgagttcggctcgttttaagtttacgagcaactc 226  Q
    |||||| ||||| || ||||||||||||||| ||||| |||| ||||||    
T  10618120 accttttttttaacttgagttcggctcgtttaaagttcacgaacaactc 10618168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 79 - 236
Target Start/End: Complemental strand, 33899740 - 33899588
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    |||||||||||||||||| ||||||| |     ||||| || ||| |||| |||||| ||||||  |||||||||||| |||  ||| |||| | |||||    
T  33899740 tagggctggaaatgagtcgagtcgaatc-----tgtctcagctcgactcgactcgataagaattgattcggctcgaaactcggttcgggttcaaaacgaa 33899646  T
Q  179 cctttgttttagctcgagttcggctcgttttaagtttacgagcaactcggctcgactc 236  Q
    ||||| || ||||||||||||||||||||| ||||| |||| | |||||| |||||||    
T  33899645 ccttttttctagctcgagttcggctcgtttaaagttcacgaaccactcggttcgactc 33899588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 79 - 200
Target Start/End: Complemental strand, 49035205 - 49035084
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    |||||||||||||||||| | ||||| | ||| |||||||| |||||||| || ||| ||| || | ||||||||||| |||||||||||| || |||||    
T  49035205 tagggctggaaatgagtcgaatcgaatcaaacatgtctgagctcggctcgacttgataagattttgctcggctcgaaactcgactcgagtttgacacgaa 49035106  T
Q  179 cctttgttttagctcgagttcg 200  Q
    |  || ||||||||||||||||    
T  49035105 ctctttttttagctcgagttcg 49035084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 79 - 154
Target Start/End: Original strand, 45174637 - 45174712
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcga 154  Q
    |||||||| ||||||||| |||||||||||||||||||||| |||||||| ||| || |||||| |||||||||||    
T  45174637 tagggctgaaaatgagtcgagtcgaaccgaacctgtctgagctcggctcgactcaataagaattggttcggctcga 45174712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 130 - 236
Target Start/End: Original strand, 22074612 - 22074718
Alignment:
Q  130 ctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaacctttgttttagctcgagttcggctcgttttaagtttacgagcaactcggc 229  Q
    |||||| |||||| ||||||||||||| ||||||||||||||||| |||| ||| || | |||| | |||||||||||| || || |||| ||||||||     
T  22074612 ctcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttttatggctcaaattcggctcgtttaaaattcacgaacaactcggt 22074711  T
Q  230 tcgactc 236  Q
    |||||||    
T  22074712 tcgactc 22074718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 79 - 208
Target Start/End: Complemental strand, 223083 - 222954
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    ||||| |||||||||||  ||||| | |||||||||||||| | |||||| |||||| | |||| | ||||||||||| ||||||||||||||| |||||    
T  223083 tagggttggaaatgagttgagtcggatcgaacctgtctgagcttggctcgactcgataaaaatttgctcggctcgaaactcgactcgagttcgacacgaa 222984  T
Q  179 cctttgttttagctcgagttcggctcgttt 208  Q
    |  || ||| ||||||| || | |||||||    
T  222983 ctcttttttcagctcgaatttgactcgttt 222954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 116 - 236
Target Start/End: Complemental strand, 18250749 - 18250629
Alignment:
Q  116 tgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaacctttgttttagctcgagttcggctcgttttaagttt 215  Q
    |||| ||| |||| |||||| |||||| ||||||||||||| | |||||||||| || ||||||||||  | || |||||||||||||||||| |||||     
T  18250749 tgagctcgactcgactcgataagaattggttcggctcgaaacttgactcgagtttgaaacgaaccttttctctaactcgagttcggctcgtttaaagttc 18250650  T
Q  216 acgagcaactcggctcgactc 236  Q
    |||| ||  |||| |||||||    
T  18250649 acgaacagttcggttcgactc 18250629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 79 - 227
Target Start/End: Original strand, 30918930 - 30919078
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    ||||||||||||||| || ||||||||||||||| |||||| ||| |||  |||||| |||||| |||| |||||||| || | ||| | |||| |||||    
T  30918930 tagggctggaaatgaatcgagtcgaaccgaacctatctgagctcgactcaactcgataagaattggttcagctcgaaactcaaatcgtgatcgaaacgaa 30919029  T
Q  179 cctttgttttagctcgagttcggctcgttttaagtttacgagcaactcg 227  Q
    ||||| | ||| ||| ||||| |||| ||| ||||| || | |||||||    
T  30919030 cctttttcttaactcaagttcagctcatttaaagttcacaaacaactcg 30919078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 124 - 228
Target Start/End: Original strand, 33124138 - 33124237
Alignment:
Q  124 gctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaacctttgttttagctcgagttcggctcgttttaagtttacgagcaa 223  Q
    ||||| |||||| |||||||| | |||||||||     ||||||||| |||||||||||| ||||| |||||||||||||||||| ||||| |||| |||    
T  33124138 gctcgactcgataagaattagcttggctcgaaa-----ctcgagttcaatacgaacctttcttttaactcgagttcggctcgtttaaagttcacgaacaa 33124232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 79 - 154
Target Start/End: Original strand, 388427 - 388502
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcga 154  Q
    |||||||||||||||||| ||||||||||||| || ||||| |||| ||| |||||| |||||| |||||||||||    
T  388427 tagggctggaaatgagtcgagtcgaaccgaacttgcctgagctcggttcgactcgataagaattggttcggctcga 388502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 79 - 154
Target Start/End: Complemental strand, 5795634 - 5795559
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcga 154  Q
    |||| ||||||||||||| ||||||| |||||||| ||||| |||||||| |||||| |||||| |||||||||||    
T  5795634 taggactggaaatgagtcgagtcgaatcgaacctgcctgagctcggctcgactcgataagaattggttcggctcga 5795559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 79 - 154
Target Start/End: Original strand, 15433629 - 15433704
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcga 154  Q
    |||||||||||||||||| ||||||||| |||||| ||||| |||||| | |||||| |||||| |||||||||||    
T  15433629 tagggctggaaatgagtcgagtcgaaccaaacctgcctgagctcggcttgactcgataagaattggttcggctcga 15433704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 228
Target Start/End: Complemental strand, 8390245 - 8390129
Alignment:
Q  112 tgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaacctttgttttagctcgagttcggctcgttttaa 211  Q
    |||||||| ||| |||| |||||| |||||  | || |||||||| || |||||| |||||||| ||||||| | |||||||||||| ||||||||| |     
T  8390245 tgtctgagctcgactcgactcgataagaatcggctcagctcgaaactcaactcgaattcgatacaaacctttttcttagctcgagtttggctcgtttaat 8390146  T
Q  212 gtttacgagcaactcgg 228  Q
    ||| |||| ||||||||    
T  8390145 gttcacgaacaactcgg 8390129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 124 - 227
Target Start/End: Original strand, 48633289 - 48633392
Alignment:
Q  124 gctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaacctttgttttagctcgagttcggctcgttttaagtttacgagcaa 223  Q
    ||||| ||||||  |||| || || |||| ||| || ||||||||||||||| ||||||| ||||| ||||||| |||||||||| | ||| ||||||||    
T  48633289 gctcgactcgatatgaatcagctcagctcaaaactcaactcgagttcgatactaaccttttttttaactcgagtccggctcgtttaatgttcacgagcaa 48633388  T
Q  224 ctcg 227  Q
    ||||    
T  48633389 ctcg 48633392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 78 - 154
Target Start/End: Complemental strand, 28950434 - 28950359
Alignment:
Q  78 ttagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcga 154  Q
    ||||||||||||||||||| ||||||||| || ||| ||||| |||||||  |||||| |||||| |||||||||||    
T  28950434 ttagggctggaaatgagtcgagtcgaacc-aaactgcctgagctcggctcaactcgataagaattggttcggctcga 28950359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 228
Target Start/End: Complemental strand, 11596490 - 11596423
Alignment:
Q  161 actcgagttcgatacgaacctttgttttagctcgagttcggctcgttttaagtttacgagcaactcgg 228  Q
    |||||||||| | |||||||||| |||  |||||| |||||||||||| ||||| |||||||||||||    
T  11596490 actcgagttcaaaacgaacctttttttgggctcgatttcggctcgtttaaagttcacgagcaactcgg 11596423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 142
Target Start/End: Original strand, 37106150 - 37106209
Alignment:
Q  83 gctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaatt 142  Q
    |||||||||||||| ||||||| |||||||||||||||||| |||| |||| | ||||||    
T  37106150 gctggaaatgagtcgagtcgaatcgaacctgtctgagttcgactcgactcgttaagaatt 37106209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 236
Target Start/End: Original strand, 26719220 - 26719299
Alignment:
Q  157 ttcgactcgagttcgatacgaacctttgttttagctcgagttcggctcgttttaagtttacgagcaactcggctcgactc 236  Q
    |||| ||||||||||| || ||  ||| || ||||||||||||||||||||| ||||| |||| | |||||| |||||||    
T  26719220 ttcggctcgagttcgaaacaaagtttttttctagctcgagttcggctcgtttaaagttcacgaaccactcggttcgactc 26719299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 228
Target Start/End: Complemental strand, 18740991 - 18740850
Alignment:
Q  82 ggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaacct 181  Q
    ||||||||||||||| ||||||  ||||||| ||| ||     |||| |||||| ||||||  ||||| ||  || |||||||||||| || || || ||    
T  18740991 ggctggaaatgagtcgagtcgagtcgaacctctctaag-----ctcgactcgataagaattgattcggttcataactcgactcgagtttgaaacaaatct 18740897  T
Q  182 ttgttttagctcgagttcggctcgttttaagtttacgagcaactcgg 228  Q
    || ||| | |||||||||| ||||||| ||||| |||| ||||||||    
T  18740896 ttttttaaactcgagttcgactcgtttaaagttcacgaacaactcgg 18740850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 226
Target Start/End: Original strand, 36471849 - 36471950
Alignment:
Q  124 gctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaacctttgttttagctcgagttcggctcgttttaagtttacgagcaa 223  Q
    ||||| |||||| ||||||  |||||||| ||| ||||||| ||||||| || ||||||| ||| |  ||||||||||||| ||| || ||||||| |||    
T  36471849 gctcgactcgataagaattgattcggctcaaaactcgactcaagttcgaaacaaaccttt-tttaaattcgagttcggctcatttaaaatttacgaacaa 36471947  T
Q  224 ctc 226  Q
    |||    
T  36471948 ctc 36471950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 219
Target Start/End: Original strand, 388498 - 388555
Alignment:
Q  162 ctcgagttcgatacgaacctttgttttagctcgagttcggctcgttttaagtttacga 219  Q
    ||||||||||| ||||||  || ||| |||||||||||||||||||| ||||| ||||    
T  388498 ctcgagttcgacacgaactattttttcagctcgagttcggctcgtttaaagttcacga 388555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 219
Target Start/End: Original strand, 17608027 - 17608168
Alignment:
Q  78 ttagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacga 177  Q
    ||||||||||||||||||  |||||||  ||||||||||||| | | |||| |||| | ||||||   |||| | ||| ||||  ||||||| || | ||    
T  17608027 ttagggctggaaatgagtagagtcgaattgaacctgtctgagcttgactcgactcgttaagaattgactcggtttgaacttcggttcgagtttgacatga 17608126  T
Q  178 acctttgttttagctcgagttcggctcgttttaagtttacga 219  Q
    || ||| || |||||||| ||||||||| || ||||| ||||    
T  17608127 actttttttctagctcgaattcggctcgcttaaagttcacga 17608168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 196
Target Start/End: Complemental strand, 20260070 - 20259953
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    ||||||||| |||||||| || |||  ||||   ||||||| ||| |||| |||||| |||||| |||| |||  ||| ||| ||||||||||| |||||    
T  20260070 tagggctggtaatgagtcgagccgactcgaattcgtctgagctcgactcgactcgataagaattggttcagcttaaaactcggctcgagttcgacacgaa 20259971  T
Q  179 cctttgttttagctcgag 196  Q
    |  || ||||||||||||    
T  20259970 ctctttttttagctcgag 20259953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 15433700 - 15433752
Alignment:
Q  162 ctcgagttcgatacgaacctttgttttagctcgagttcggctcgttttaagtt 214  Q
    ||||||||||| ||||||  || ||| |||||||||||||||||||| |||||    
T  15433700 ctcgagttcgacacgaactattttttcagctcgagttcggctcgtttaaagtt 15433752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 119
Target Start/End: Complemental strand, 27232523 - 27232483
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgag 119  Q
    |||||||||||||||||| ||||||| |||| |||||||||    
T  27232523 tagggctggaaatgagtcgagtcgaatcgaatctgtctgag 27232483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 142
Target Start/End: Complemental strand, 42012319 - 42012255
Alignment:
Q  78 ttagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaatt 142  Q
    |||| |||||||||||||| ||||||| ||||| |||||||| ||| |||| |||| | ||||||    
T  42012319 ttagagctggaaatgagtcgagtcgaatcgaacttgtctgagctcgactcgactcgttaagaatt 42012255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 46574359 - 46574319
Alignment:
Q  78 ttagggctggaaatgagtcaagtcgaaccgaacctgtctga 118  Q
    ||||||||||||||||||| ||||||  |||||||||||||    
T  46574359 ttagggctggaaatgagtcgagtcgagtcgaacctgtctga 46574319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 79 - 219
Target Start/End: Complemental strand, 9413404 - 9413264
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    |||||||||||||||||| |||||||| |||| |||||||| ||| |||| |||||| |||| | ||||||||||||| |||||| |||||||| |||||    
T  9413404 tagggctggaaatgagtcgagtcgaactgaacttgtctgagctcgactcgactcgataagaaatggttcggctcgaaactcgacttgagttcgacacgaa 9413305  T
Q  179 cctttgttttagctcgagttcggctcgttttaagtttacga 219  Q
    ||||| ||||||||| |||||||||| ||| ||||| ||||    
T  9413304 ccttttttttagctcaagttcggctcatttaaagttcacga 9413264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 79 - 228
Target Start/End: Original strand, 43966887 - 43967031
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    |||||||||||||||||| ||||||||      |||||||  |||||||| |||||| |||||| ||||||||||||| ||||||||||||| | |||||    
T  43966887 tagggctggaaatgagtcgagtcgaact-----tgtctgaactcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcaaaacgaa 43966981  T
Q  179 cctttgttttagctcgagttcggctcgttttaagtttacgagcaactcgg 228  Q
      ||| |||  ||||||||||||||||||| ||||| |||||||||||||    
T  43966982 tttttttttgggctcgagttcggctcgtttaaagttcacgagcaactcgg 43967031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 79 - 219
Target Start/End: Original strand, 11161078 - 11161218
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    ||||| || ||||||||| |||||||||| ||||| ||||| |||||||  |||||| |||||| ||||||||||||  ||| ||||||||||  |||||    
T  11161078 tagggttgcaaatgagtcgagtcgaaccggacctgcctgagctcggctccactcgataagaattggttcggctcgaacctcggctcgagttcgccacgaa 11161177  T
Q  179 cctttgttttagctcgagttcggctcgttttaagtttacga 219  Q
    |  || ||| ||||||||||| |||||||| ||||| ||||    
T  11161178 ctattttttcagctcgagttcagctcgtttaaagttcacga 11161218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 85 - 219
Target Start/End: Complemental strand, 25731983 - 25731854
Alignment:
Q  85 tggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaacctttg 184  Q
    |||||||||||| ||||||||||||  ||||||||     |||| |||||| |||||| ||||||||||||| ||||||| |||||||| | |||| ||     
T  25731983 tggaaatgagtcgagtcgaaccgaatttgtctgag-----ctcgactcgataagaattggttcggctcgaaagtcgactcaagttcgatgcaaacccttt 25731889  T
Q  185 ttttagctcgagttcggctcgttttaagtttacga 219  Q
    ||||| || ||||||||||| ||| ||||| ||||    
T  25731888 ttttaacttgagttcggctcatttaaagttcacga 25731854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 79 - 199
Target Start/End: Complemental strand, 22930984 - 22930869
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    |||| ||||||||||||| |||||||||||||||||||||      |||| |||||| |||||| ||||||||||||| ||| ||||||||||| || ||    
T  22930984 taggactggaaatgagtcgagtcgaaccgaacctgtctga-----actcgactcgataagaattggttcggctcgaaactcggctcgagttcgacacaaa 22930890  T
Q  179 cctttgttttagctcgagttc 199  Q
    |  || ||| |||||||||||    
T  22930889 ctattttttcagctcgagttc 22930869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 208
Target Start/End: Original strand, 22563277 - 22563387
Alignment:
Q  98 agtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaacctttgttttagctcgagt 197  Q
    ||||||| |||| ||||||||| |||||||  |||||| ||| || | ||||||||||| ||||||||||||| | ||||||  || ||| |||||||||    
T  22563277 agtcgaatcgaatctgtctgagctcggctcaactcgataagattttgctcggctcgaaactcgactcgagttcaacacgaactcttttttcagctcgagt 22563376  T
Q  198 tcggctcgttt 208  Q
    ||| |||||||    
T  22563377 tcgactcgttt 22563387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 228
Target Start/End: Original strand, 12377748 - 12377870
Alignment:
Q  106 cgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaacctttgttttagctcgagttcggctcg 205  Q
    |||||||||||||  ||| ||||  ||||| |||||  |||| |||||||| ||||||||||||||| ||||||  || ||||| |||||||||  ||||    
T  12377748 cgaacctgtctgaactcgactcgattcgataagaatgtgttcagctcgaaactcgactcgagttcgaaacgaactatttttttaactcgagttcatctcg 12377847  T
Q  206 ttttaagtttacgagcaactcgg 228  Q
    ||| ||||| || | ||||||||    
T  12377848 tttaaagttcacaaacaactcgg 12377870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 157 - 227
Target Start/End: Original strand, 24854057 - 24854127
Alignment:
Q  157 ttcgactcgagttcgatacgaacctttgttttagctcgagttcggctcgttttaagtttacgagcaactcg 227  Q
    |||||||||||||||| || ||||||| |||||| | ||||||||||| |||||||||||| | |||||||    
T  24854057 ttcgactcgagttcgaaacaaaccttttttttagtttgagttcggctcattttaagtttacaaacaactcg 24854127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 33280772 - 33280715
Alignment:
Q  85 tggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaatt 142  Q
    |||||||||||| ||||||| |||||||||||||||||| |||| |||| ||||||||    
T  33280772 tggaaatgagtcgagtcgaatcgaacctgtctgagttcgactcgactcgtttagaatt 33280715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 236
Target Start/End: Original strand, 39477423 - 39477574
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    |||||||||||||||||| ||||||| |     |||||||| ||| |||| |||||| |||||| |||||  |||||| | | ||||| ||||| |||||    
T  39477423 tagggctggaaatgagtcgagtcgaatc-----tgtctgagctcgactcgactcgataagaattggttcgattcgaaacttggctcgaattcgaaacgaa 39477517  T
Q  179 cctttgttttagctcgagttcggctcgttttaagtttacgagcaactcggctcgactc 236  Q
    | ||| || |||||||||||||||| |||| ||||| |||| | |||| | |||||||    
T  39477518 cattt-ttctagctcgagttcggcttgtttaaagttcacgaaccactcagttcgactc 39477574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 204
Target Start/End: Complemental strand, 27189693 - 27189569
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    |||||||||||||||||| ||||||| ||||| |||||||| ||| |||| |||| | ||||||   |||| |||||  |||| ||  ||| || |||||    
T  27189693 tagggctggaaatgagtcgagtcgaatcgaacttgtctgagctcgactcgactcgttaagaattgcctcggttcgaacctcgattcttgtttgacacgaa 27189594  T
Q  179 cctttgttttagctcgagttcggctc 204  Q
     |||| ||||||||| ||||||||||    
T  27189593 -cttttttttagctcaagttcggctc 27189569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 179
Target Start/End: Original strand, 32740279 - 32740379
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    |||||||| ||||||||| | ||||  ||||  | ||||||||||  ||| ||| || ||||||||||| ||||||||||| |||||| ||| |||||||    
T  32740279 tagggctgaaaatgagtcgaatcgagtcgaatttatctgagttcgattcgactcaataagaattagttcagctcgaaattcaactcgaattcaatacgaa 32740378  T
Q  179 c 179  Q
    |    
T  32740379 c 32740379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 17865777 - 17865721
Alignment:
Q  116 tgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcga 172  Q
    ||||| ||||||  |||||| |||||| |||| |||||||| |||||||||||||||    
T  17865777 tgagtccggctcaactcgataagaattggttcagctcgaaactcgactcgagttcga 17865721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 119
Target Start/End: Original strand, 34515555 - 34515595
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgag 119  Q
    |||||||||||||||||| ||||||| ||||||| ||||||    
T  34515555 tagggctggaaatgagtcgagtcgaatcgaacctatctgag 34515595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 79 - 219
Target Start/End: Original strand, 18710 - 18850
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    |||||||||||||||||| |||||||||||| |||| |||| |||||||| |||||| |||||| ||||||||| ||| |||  |||||||||| |||||    
T  18710 tagggctggaaatgagtcgagtcgaaccgaatctgtttgagctcggctcgactcgataagaattggttcggctcaaaactcggttcgagttcgacacgaa 18809  T
Q  179 cctttgttttagctcgagttcggctcgttttaagtttacga 219  Q
    |  || ||| |||||||||||||||||||| ||||| ||||    
T  18810 ctattttttcagctcgagttcggctcgtttaaagttcacga 18850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 81 - 179
Target Start/End: Original strand, 26495 - 26593
Alignment:
Q  81 gggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaac 179  Q
    ||||||||||| |||| ||| ||| ||||||||| |||| ||| |||| |||||| |||||| |||| |||||||||||||||||||||||| ||||||    
T  26495 gggctggaaatcagtcgagttgaatcgaacctgtttgagctcgactcgactcgataagaattggttcagctcgaaattcgactcgagttcgaaacgaac 26593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0444 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0444
Description:

Target: scaffold0444; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 78 - 225
Target Start/End: Complemental strand, 1544 - 1407
Alignment:
Q  78 ttagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacga 177  Q
    ||||||||||||||||||| |||||||||     ||||||||     |||| |||||| |||||| ||||||||||||| |||||||||||| || ||||    
T  1544 ttagggctggaaatgagtcgagtcgaacc-----tgtctgag-----ctcgactcgataagaattggttcggctcgaaactcgactcgagtttgaaacga 1455  T
Q  178 acctttgttttagctcgagttcggctcgttttaagtttacgagcaact 225  Q
    ||||||  | || || ||||||||||||||| ||||| |||| |||||    
T  1454 accttttctctaacttgagttcggctcgtttaaagttcacgaacaact 1407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 208
Target Start/End: Original strand, 16491 - 16620
Alignment:
Q  78 ttagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacga 177  Q
    ||||||||||||||||||| ||||||| |||||||||||||| ||| |||  ||| |  | |||  ||||||||||||| |||||||||||| || || |    
T  16491 ttagggctggaaatgagtcgagtcgaatcgaacctgtctgagctcgactcaactcaacaaaaatatgttcggctcgaaactcgactcgagtttgaaacaa 16590  T
Q  178 acctttgttttagctcgagttcggctcgttt 208  Q
    |||||| |||  |||| |||| |||||||||    
T  16591 accttt-tttaggctcaagtttggctcgttt 16620  T

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Target: scaffold0658 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0658
Description:

Target: scaffold0658; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 179
Target Start/End: Complemental strand, 6533 - 6433
Alignment:
Q  79 tagggctggaaatgagtcaagtcgaaccgaacctgtctgagttcggctcggctcgattagaattagttcggctcgaaattcgactcgagttcgatacgaa 178  Q
    |||||||| ||||||||| |||||||  ||||||| ||||| ||| |||| |||||| |||||| |||||| | |||| ||| ||||||||||| |||||    
T  6533 tagggctgaaaatgagtcgagtcgaattgaacctgcctgagctcgactcgactcgataagaattggttcgggttgaaactcggctcgagttcgacacgaa 6434  T
Q  179 c 179  Q
    |    
T  6433 c 6433  T

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Target: scaffold0025 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 4745 - 4813
Alignment:
Q  146 tcggctcgaaattcgactcgagttcgatacgaacctttgttttagctcgagttcggctcgttttaagtt 214  Q
    ||||||||||| ||||||||||||||||||||||| || ||||  ||| |||||||||||||| |||||    
T  4745 tcggctcgaaactcgactcgagttcgatacgaaccatttttttgactcaagttcggctcgtttaaagtt 4813  T

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Target: scaffold0135 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 236
Target Start/End: Complemental strand, 33502 - 33423
Alignment:
Q  157 ttcgactcgagttcgatacgaacctttgttttagctcgagttcggctcgttttaagtttacgagcaactcggctcgactc 236  Q
    |||| ||||||||  | |||||||||| ||||||||||||||||||| |||| ||||| | || | |||||| |||||||    
T  33502 ttcggctcgagtttcaaacgaaccttttttttagctcgagttcggcttgtttaaagttcatgaaccactcggttcgactc 33423  T

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