View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18031_low_4 (Length: 438)
Name: NF18031_low_4
Description: NF18031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18031_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 136 - 383
Target Start/End: Complemental strand, 2623511 - 2623262
Alignment:
| Q |
136 |
tccatcaataaaaagatctaccgtgacccaaatttgctaaaagatccgcacaa-gtgttggcttctctataaatatgagatacttgtacgtacattccga |
234 |
Q |
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| T |
2623511 |
tccatcaataaaaagatctaccgtgacccaaatttgctaaaagatccgcacaaagtgttggcttctctataaatatgagatacttgtacgtacattccga |
2623412 |
T |
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| Q |
235 |
tttttgagattgagagaatgaagaatatcatcca-------ttggagagcaataatcaggtaccttttttactagactaacaacggcggaggagtcaact |
327 |
Q |
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| T |
2623411 |
tttttgagattgagagaatgaagaatatcatccaagataggttggagagcaataatcaggtaccttttttactagactaacaacggcggaggag------ |
2623318 |
T |
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| Q |
328 |
tcaacttcaacgagaagagaataaatagaaaaacttttattgagcttcaagccaag |
383 |
Q |
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| T |
2623317 |
tcaacttcaacgagaagagaataaatagaaaaacttttattgagcttcaagccaag |
2623262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 2623666 - 2623554
Alignment:
| Q |
1 |
tcttagttatcatgaataataggccaagtagtatttatgcaatgacaagtggcggcgtacgtgtgggtcctagttgccatgttttgtacatttggagcct |
100 |
Q |
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| T |
2623666 |
tcttagttatcatgaatgataggccaagtagtatttatgcaatgacaagtggcggcgtacgtgtgggtcctagttgccatgttttgtacatttggagcct |
2623567 |
T |
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| Q |
101 |
gaaaaacatgttg |
113 |
Q |
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| T |
2623566 |
gaaaaacatgttg |
2623554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 141 - 220
Target Start/End: Original strand, 26603933 - 26604012
Alignment:
| Q |
141 |
caataaaaagatctaccgtgacccaaatttgctaaaagatccgcacaagtgttggcttctctataaatatgagatacttg |
220 |
Q |
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| T |
26603933 |
caatcaaaatatctatggtgacccaagtttcctaaaaaattcgtacaattgttggcttctctataaatttgagatacttg |
26604012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 36518909 - 36518861
Alignment:
| Q |
168 |
tttgctaaaagatccgcacaagtgttggcttctctataaatatgagata |
216 |
Q |
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| T |
36518909 |
tttgctagaagatccgcacaactattggctactctataaatataagata |
36518861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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