View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18031_low_8 (Length: 289)
Name: NF18031_low_8
Description: NF18031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18031_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 7e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 39583917 - 39583663
Alignment:
| Q |
1 |
atgagcttgctgagaatggtcatagtctccctcaactttactctcaacggcgggatttcacnnnnnnn-agttcctttgttagatacagatagcagtagc |
99 |
Q |
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| T |
39583917 |
atgagcttgctgagaatggtcatagtctccctcaactttactctcaatggtgggatttcacttttttttagttcctttgttagatacagatagcagtagc |
39583818 |
T |
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| Q |
100 |
ttaccttacttgagacgatcctttgtataatcttggttcatgtctctcctgcatttatttgatttgctttcattaaaaaatgtgaatgaaaatatatgta |
199 |
Q |
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| T |
39583817 |
ttaccttacttgagacgatcctttgtataatcttggttcatgtctctcctgcatttatttgatttgctttcattcaaaaatgtgaatga----------- |
39583729 |
T |
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| Q |
200 |
tgataaataaaatgttgtgtttttcttccacaccaaacacaatttgcatttgagtaaacatattaagttacaac |
273 |
Q |
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| T |
39583728 |
--------aaaatgttgtgtttttcttccacaccaaacacaatttgcatttgagtaaacatattaagttacaac |
39583663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 272
Target Start/End: Complemental strand, 39572519 - 39572448
Alignment:
| Q |
202 |
ataaataaaatgttgtgtttttcttccacaccaaacacaatttgcatttg-agtaaacatattaagttacaa |
272 |
Q |
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|||||||||||| ||||||||| |||||||||||||||||||| ||||| | ||| |||||||| |||||| |
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| T |
39572519 |
ataaataaaatgcagtgtttttcatccacaccaaacacaatttgtatttgaaataagcatattaaattacaa |
39572448 |
T |
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