View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18032_high_3 (Length: 228)

Name: NF18032_high_3
Description: NF18032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18032_high_3
NF18032_high_3
[»] chr1 (4 HSPs)
chr1 (11-165)||(14707460-14707616)
chr1 (18-165)||(14668196-14668345)
chr1 (39-77)||(35322371-35322409)
chr1 (12-97)||(14665175-14665260)
[»] chr2 (2 HSPs)
chr2 (43-165)||(30732879-30733003)
chr2 (39-73)||(17902903-17902937)
[»] chr5 (1 HSPs)
chr5 (39-77)||(33305034-33305072)
[»] chr3 (1 HSPs)
chr3 (39-77)||(31637621-31637659)


Alignment Details
Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 11 - 165
Target Start/End: Original strand, 14707460 - 14707616
Alignment:
Q  11 gataatattgttcgttgtaaaaactaaggtgaagtttattaggagacaagtcaatggggttgctcat--gtgttagtaagggtggccttccgcattttca 108  Q
    |||||| |||| ||||||||||| |||| |  ||||||||||||||||||||||  |||||||||||  ||||||| ||||| |||||||| ||||| ||    
T  14707460 gataatcttgtccgttgtaaaaattaagattgagtttattaggagacaagtcaaaagggttgctcataagtgttagcaagggcggccttccacatttcca 14707559  T
Q  109 ttgatcctacatgtactcgcaatattctaattaaggaaatgctataaactttttatc 165  Q
    | |||||||| |||| ||   ||||||||||||| |||||||||||| |||||||||    
T  14707560 tcgatcctacttgtattcatcatattctaattaatgaaatgctataagctttttatc 14707616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 165
Target Start/End: Complemental strand, 14668345 - 14668196
Alignment:
Q  18 ttgttcgttgtaaaaactaaggtgaagtttattaggagacaagtcaatggggttgctcat--gtgttagtaagggtggccttccgcattttcattgatcc 115  Q
    |||| ||||||||||| ||| |   |||||||||||| |||||||||  |||||||||||  ||||||| ||||| |||||||| ||||| |||||||||    
T  14668345 ttgtccgttgtaaaaattaaagatgagtttattaggatacaagtcaaaagggttgctcataagtgttagcaagggcggccttccacatttccattgatcc 14668246  T
Q  116 tacatgtactcgcaatattctaattaaggaaatgctataaactttttatc 165  Q
    | | |||| ||   ||||||||||| | |||||||||||| |||||||||    
T  14668245 tgcttgtattcatcatattctaattgatgaaatgctataagctttttatc 14668196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 77
Target Start/End: Original strand, 35322371 - 35322409
Alignment:
Q  39 gtgaagtttattaggagacaagtcaatggggttgctcat 77  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  35322371 gtgaagttcattaggagacaagtcaatggtgttgctcat 35322409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 97
Target Start/End: Complemental strand, 14665260 - 14665175
Alignment:
Q  12 ataatattgttcgttgtaaaaactaaggtgaagtttattaggagacaagtcaatggggttgctcatgtgttagtaagggtggcctt 97  Q
    ||||| |||| |||||||||| ||| | |  || |||| |||||| |||||||||  |||||||||||||||| ||||| ||||||    
T  14665260 ataatcttgtccgttgtaaaatctatgattgagcttataaggagaaaagtcaatgacgttgctcatgtgttagcaagggcggcctt 14665175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 43 - 165
Target Start/End: Original strand, 30732879 - 30733003
Alignment:
Q  43 agtttattaggagacaagtcaatggggttgctcat--gtgttagtaagggtggccttccgcattttcattgatcctacatgtactcgcaatattctaatt 140  Q
    ||||||||||||||||||||||  |||||||||||  ||||||| ||||| |||||||| ||||| |||||||||| | |||| ||   |||||||||||    
T  30732879 agtttattaggagacaagtcaaaagggttgctcataagtgttagcaagggcggccttccacatttccattgatcctgcttgtattcatcatattctaatt 30732978  T
Q  141 aaggaaatgctataaactttttatc 165  Q
     | |||||||||||| |||||||||    
T  30732979 gatgaaatgctataagctttttatc 30733003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 73
Target Start/End: Original strand, 17902903 - 17902937
Alignment:
Q  39 gtgaagtttattaggagacaagtcaatggggttgc 73  Q
    ||||||||||||||||||||||||||||| |||||    
T  17902903 gtgaagtttattaggagacaagtcaatggtgttgc 17902937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 77
Target Start/End: Complemental strand, 33305072 - 33305034
Alignment:
Q  39 gtgaagtttattaggagacaagtcaatggggttgctcat 77  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  33305072 gtgaagttcattaggagacaagtcaatggtgttgctcat 33305034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 77
Target Start/End: Original strand, 31637621 - 31637659
Alignment:
Q  39 gtgaagtttattaggagacaagtcaatggggttgctcat 77  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  31637621 gtgaagttcattaggagacaagtcaatggtgttgctcat 31637659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University