View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18032_low_2 (Length: 374)
Name: NF18032_low_2
Description: NF18032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18032_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 10 - 355
Target Start/End: Complemental strand, 39695706 - 39695361
Alignment:
| Q |
10 |
ataggtaatacacaaagttgatacctccaaacactactaacatccaatacacattatcaaccttgccatgatttatttcatcaggtaaccaatcagtact |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39695706 |
ataggtaatacacaaagttgatacctccaaacactactaacatccaatacacattatcaaccttgccatgatttatttcatcaggtaaccaatcagtact |
39695607 |
T |
|
| Q |
110 |
cctacgaacctggtcaattaaagcagtgctcaaataaaaagcaatccctataagcattgaaatcattgctgttgatgtgttcttaagtgattgtggaaat |
209 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39695606 |
cctacgaacttggtcaattaaagcagtgctcaaataaaaagcaattcctataagcattgaaatcattgctgttgatgtgttcttaagtgattgtggaaat |
39695507 |
T |
|
| Q |
210 |
tgttggtagtagaatgtaacttgtccaggaaaatgaaaagcttctccaataccaaccaacactaactgtggaaacaaccataacacagacatggaaacat |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39695506 |
tgttggtagtagaatgtaacttgtccaggaaaatgaaaagcttctccaataccaaccaacactaactgtggaaacaaccataacacagacatggaaacat |
39695407 |
T |
|
| Q |
310 |
tatgcacatgtactaatttgagcctctttgattcaacaagagcaga |
355 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
39695406 |
tatgcacatgtactaatttgagtctctttgattcaacaagagcaga |
39695361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 15 - 355
Target Start/End: Original strand, 39934412 - 39934754
Alignment:
| Q |
15 |
taatacacaaagttgatacctccaaacactactaacatccaatacacattatcaaccttgccatgatttatttcatcaggtaaccaatcagtactcctac |
114 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39934412 |
taatacacaaagttgatagctccaaacacgactaacatccaatacacattatcaaccttgccatgatttatttcatcaggtaaccaatcagtactcctac |
39934511 |
T |
|
| Q |
115 |
gaacctggtcaattaaagcagtgctcaaataaaaagcaatccctataagcattgaaatcattgctgttgatgtgttcttaagtgattgtggaaattgttg |
214 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
39934512 |
gaacttggtcaattaaagcagtgctcaagtaaaaagcaattcctataagcattgaaatcattgcagttgatgtgctcttaagtgattgtggaaattgttg |
39934611 |
T |
|
| Q |
215 |
gtagtagaatgtaacttgtccaggaaaatgaaaagcttctccaataccaaccaacactaactgtggaaacaaccataacacagacatggaaacat--tat |
312 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||| ||| |
|
|
| T |
39934612 |
ataatagaatgtaacttgtccaggaaaatgaaaagcttctccaataccaaccaacactaattgtggaaaaaaccataacacggacatggaaacattatat |
39934711 |
T |
|
| Q |
313 |
gcacatgtactaatttgagcctctttgattcaacaagagcaga |
355 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
39934712 |
gcacatgtgctaatttgagtctctttgattcaacaagagcaga |
39934754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 14 - 355
Target Start/End: Complemental strand, 39704611 - 39704273
Alignment:
| Q |
14 |
gtaatacacaaagttgatacctccaaacactactaacatccaatacacattatcaaccttgccatgatttatttcatcaggtaaccaatcagtactccta |
113 |
Q |
| |
|
||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39704611 |
gtaatacacaaagttgatagctccaaacatgaccaacatccaatacacattatcaaccttgccatgatttatttcatcaggtaaccaatcagtactccta |
39704512 |
T |
|
| Q |
114 |
cgaacctggtcaattaaagcagtgctcaaataaaaagcaatccctataagcattgaaatcattgctgttgatgtgttcttaagtgattgtggaaattgtt |
213 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
39704511 |
cgaacttggtcaattaaagcagtgctcaaataaaaagcaatacctataagcattgaaatcattgcagttgatgtgatcttaagtgattgtggaaattgtt |
39704412 |
T |
|
| Q |
214 |
ggtagtagaatgtaacttgtccaggaaaatgaaaagcttctccaataccaaccaacactaactgtggaaacaaccataacacagacatggaaacattatg |
313 |
Q |
| |
|
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||| |
|
|
| T |
39704411 |
gataatagaatgtaacttgtccaggaaaatgaaaagcttctccaataccaaccaacactaattgtggaaacaaccataacacagacatttccac---atg |
39704315 |
T |
|
| Q |
314 |
cacatgtactaatttgagcctctttgattcaacaagagcaga |
355 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
39704314 |
cacatgtaccaatttgagcctctttgattcaacaagagcaga |
39704273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 14 - 355
Target Start/End: Original strand, 39928764 - 39929102
Alignment:
| Q |
14 |
gtaatacacaaagttgatacctccaaacactactaacatccaatacacattatcaaccttgccatgatttatttcatcaggtaaccaatcagtactccta |
113 |
Q |
| |
|
||||||||||||||| ||||| || | | ||||||||||| |||||||| |||| ||| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
39928764 |
gtaatacacaaagtttatacccccgagtaggactaacatccagtacacattgtcaatcttcccatgatttatgtcatcaggtaaccaatcagtactccta |
39928863 |
T |
|
| Q |
114 |
cgaacctggtcaattaaagcagtgctcaaataaaaagcaatccctataagcattgaaatcattgctgttgatgtgttcttaagtgattgtggaaattgtt |
213 |
Q |
| |
|
||||| || |||||||| ||| |||||| |||||||||| ||||||||||||||||| | |||| ||||||||| |||| || |||||||||||||||| |
|
|
| T |
39928864 |
cgaacttgatcaattaatgcattgctcatgtaaaaagcaacccctataagcattgaaaccgttgcagttgatgtgctctttagcgattgtggaaattgtt |
39928963 |
T |
|
| Q |
214 |
ggtagtagaatgtaacttgtccaggaaaatgaaaagcttctccaataccaaccaacactaactgtggaaacaaccataacacagacatggaaacattatg |
313 |
Q |
| |
|
| || ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||| ||| |
|
|
| T |
39928964 |
gataatagaatgtaacttgtccaggaaaatgaaacgcttctccgataccaaccaacactaattgtggaaacaaccataatacagacattgaaac---atg |
39929060 |
T |
|
| Q |
314 |
cacatgtactaatttgagcctctttgattcaacaagagcaga |
355 |
Q |
| |
|
|||| |||||||||| ||||| ||||||||||||||||| |
|
|
| T |
39929061 |
ttcatgcgctaatttgagtctcttcgattcaacaagagcaga |
39929102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 180 - 301
Target Start/End: Original strand, 38061607 - 38061728
Alignment:
| Q |
180 |
gttgatgtgttcttaagtgattgtggaaattgttggtagtagaatgtaacttgtccaggaaaatgaaaagcttctccaataccaaccaacactaactgtg |
279 |
Q |
| |
|
||||||||| |||| ||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||| || ||| |||| |
|
|
| T |
38061607 |
gttgatgtgctcttcagtgactgtggaaattgttgataatagaatgtaacttgtccaggaaaatgaaaagcttctccaatactcaccagcattaattgtg |
38061706 |
T |
|
| Q |
280 |
gaaacaaccataacacagacat |
301 |
Q |
| |
|
||||||| |||||||||||||| |
|
|
| T |
38061707 |
gaaacaaacataacacagacat |
38061728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 151
Target Start/End: Original strand, 38059050 - 38059126
Alignment:
| Q |
75 |
ccatgatttatttcatcaggtaaccaatcagtactcctacgaacctggtcaattaaagcagtgctcaaataaaaagc |
151 |
Q |
| |
|
||||||||||| ||||| |||||||||| |||| ||||| | | ||||||| ||||| ||||||||| | |||||| |
|
|
| T |
38059050 |
ccatgatttatgtcatctggtaaccaattagtaatcctatggatttggtcaactaaagtagtgctcaagttaaaagc |
38059126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 236
Target Start/End: Complemental strand, 4847209 - 4847134
Alignment:
| Q |
161 |
aagcattgaaatcattgctgttgatgtgttcttaagtgattgtggaaattgttggtagtagaatgtaacttgtcca |
236 |
Q |
| |
|
||||||||||||||||| ||||||||| || || | ||||||||||||||| |||||| |||||||||| |||| |
|
|
| T |
4847209 |
aagcattgaaatcattggagttgatgtgctcaaaaattattgtggaaattgtttgtagtaaaatgtaacttctcca |
4847134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University