View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18033_high_1 (Length: 794)

Name: NF18033_high_1
Description: NF18033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18033_high_1
NF18033_high_1
[»] chr3 (5 HSPs)
chr3 (376-776)||(33991088-33991488)
chr3 (1-313)||(33990713-33991025)
chr3 (29-59)||(1116401-1116431)
chr3 (25-62)||(4216083-4216120)
chr3 (7-60)||(35335587-35335640)
[»] chr4 (6 HSPs)
chr4 (656-776)||(42867883-42868003)
chr4 (3-45)||(7367535-7367577)
chr4 (241-311)||(42868453-42868523)
chr4 (8-56)||(43843634-43843682)
chr4 (497-535)||(41571464-41571502)
chr4 (402-456)||(42868177-42868231)
[»] chr5 (4 HSPs)
chr5 (656-776)||(18854726-18854846)
chr5 (399-459)||(18854946-18855006)
chr5 (241-309)||(18855231-18855299)
chr5 (27-63)||(6760514-6760550)
[»] chr1 (2 HSPs)
chr1 (3-63)||(3523373-3523433)
chr1 (14-56)||(52156777-52156819)
[»] chr7 (1 HSPs)
chr7 (25-63)||(438696-438734)
[»] chr2 (1 HSPs)
chr2 (497-535)||(26004210-26004248)
[»] chr6 (2 HSPs)
chr6 (28-61)||(4323114-4323147)
chr6 (18-55)||(32926315-32926352)


Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 376 - 776
Target Start/End: Original strand, 33991088 - 33991488
Alignment:
Q  376 acaatatttgatgtttatttatatttcagagagaactatggctgtgatgttgtttgcttcactgctgatctaggccaagtatgttctaatctgtacataa 475  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33991088 acaatatttgatgtttatttatatttcagagagaactatggctgtgatgttgtttgcttcactgctgatctaggccaagtatgttctaatctgtacataa 33991187  T
Q  476 atatgatcaatagtctctaatgtatataaaatccttcaatttagtccctgctattaagattcatatgtcaaagactaaattacaggatttcatacacttt 575  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  33991188 atatgataaatagtctctaatgtatataaaatccttcaatttagtccctgctattaagattcagatgtcaaagactaaattgcaggatttcatacacttt 33991287  T
Q  576 agaaactgaattgacggatgtcatttactttaattgctgcatgcttgattaacaaatgcaaattttcttagggggcaagtgaattggaaggtttagaaga 675  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33991288 agaaactgaattgactgatgtcatttactttaattgctgcatgcttgattaacaaatgcaaattttcttagggggcaagtgaattggaaggtttagaaga 33991387  T
Q  676 gaaggcaaaagccagcggagcttctcagttagtcgtgaaggatttgaaggaggaatttgttagggattatgtattcccttgcctgcgtgccggtgcaatt 775  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33991388 gaaggcaaaagccagcggagcttctcagttagtcgtgaaggatttgaaggaggaatttgttagggattatgtattcccttgcctgcgtgccggtgcaatt 33991487  T
Q  776 t 776  Q
    |    
T  33991488 t 33991488  T

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Target: chr3; HSP #2
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 33990713 - 33991025
Alignment:
Q  1 ggacacgacactaacacatagacgccaataataatttgagaaaattgaagtgattaaatgtaaaccattggtcagtgtcatacaccagaatccagatatg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  33990713 ggacacgacactaacacatagacgccaataataatttgagaaaattgaagtgcttaaatgtaaaccatgggtcagtgtcatacaccagaatccagatatg 33990812  T
Q  101 ttcagtgttatctgataattgagttttaagtttaatgtctctaacagtgaagttttattgaaatgcagttataaaagctgtgctatataaagacgttgaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  33990813 ttcagtgttatctgataattgagttttaagtttaatgtctctaacagtgaagttttattgaaatgcagttataaaagctgtgctatataaagacgtagaa 33990912  T
Q  201 atttctgagaccaagaaggttgctggactaaaaggtaaactgaataaggttgttctggcttatagtggtggcttagacacatcggttgttgtcccctggc 300  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33990913 atttctgagaccaagaaggttgctggactaaaaggtaaattgaataaggttgttctggcttatagtggtggcttagacacatcggttgttgtcccctggc 33991012  T
Q  301 tgaggtatataaa 313  Q
    |||||||||||||    
T  33991013 tgaggtatataaa 33991025  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 59
Target Start/End: Original strand, 1116401 - 1116431
Alignment:
Q  29 taataatttgagaaaattgaagtgattaaat 59  Q
    |||||||||||||||||||||||||||||||    
T  1116401 taataatttgagaaaattgaagtgattaaat 1116431  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 4216120 - 4216083
Alignment:
Q  25 ccaataataatttgagaaaattgaagtgattaaatgta 62  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  4216120 ccaataataattaaagaaaattgaagtgattaaatgta 4216083  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 35335587 - 35335640
Alignment:
Q  7 gacactaacacatagacgccaataataatttgagaaaattgaagtgattaaatg 60  Q
    |||||| |||||||||| | | |||||||||||||||||  |||||||||||||    
T  35335587 gacactgacacatagacactagtaataatttgagaaaatgaaagtgattaaatg 35335640  T

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Target: chr4 (Bit Score: 53; Significance: 5e-21; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 656 - 776
Target Start/End: Complemental strand, 42868003 - 42867883
Alignment:
Q  656 gaattggaaggtttagaagagaaggcaaaagccagcggagcttctcagttagtcgtgaaggatttgaaggaggaatttgttagggattatgtattccctt 755  Q
    |||||||| ||||| ||||  || ||||||||||| ||||| || || |||||||| ||||| |||||||||||||||||||  ||||| ||||| ||||    
T  42868003 gaattggatggtttggaagccaaagcaaaagccagtggagcctcccaattagtcgtaaaggacttgaaggaggaatttgttaaagattacgtatttcctt 42867904  T
Q  756 gcctgcgtgccggtgcaattt 776  Q
    |||||||||| ||||| ||||    
T  42867903 gcctgcgtgctggtgccattt 42867883  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 7367535 - 7367577
Alignment:
Q  3 acacgacactaacacatagacgccaataataatttgagaaaat 45  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  7367535 acacgacactaacacatagacaccaataataatttgagaaaat 7367577  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 241 - 311
Target Start/End: Complemental strand, 42868523 - 42868453
Alignment:
Q  241 tgaataaggttgttctggcttatagtggtggcttagacacatcggttgttgtcccctggctgaggtatata 311  Q
    ||||||||||||| || ||||| |||||||||||||||||||| ||  ||||||| ||| |||||||||||    
T  42868523 tgaataaggttgtacttgcttacagtggtggcttagacacatcagtcattgtcccatggttgaggtatata 42868453  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 43843682 - 43843634
Alignment:
Q  8 acactaacacatagacgccaataataatttgagaaaattgaagtgatta 56  Q
    |||||||||| ||||| |||||||||||||||||||||  |||||||||    
T  43843682 acactaacacgtagacaccaataataatttgagaaaataaaagtgatta 43843634  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 497 - 535
Target Start/End: Complemental strand, 41571502 - 41571464
Alignment:
Q  497 gtatataaaatccttcaatttagtccctgctattaagat 535  Q
    ||||||||||||| |||| ||||||||||||||||||||    
T  41571502 gtatataaaatccgtcaacttagtccctgctattaagat 41571464  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 402 - 456
Target Start/End: Complemental strand, 42868231 - 42868177
Alignment:
Q  402 cagagagaactatggctgtgatgttgtttgcttcactgctgatctaggccaagta 456  Q
    ||||||||| || || ||||||||||| ||||||||||||||| | |||||||||    
T  42868231 cagagagaattacggttgtgatgttgtgtgcttcactgctgatgttggccaagta 42868177  T

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Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 656 - 776
Target Start/End: Complemental strand, 18854846 - 18854726
Alignment:
Q  656 gaattggaaggtttagaagagaaggcaaaagccagcggagcttctcagttagtcgtgaaggatttgaaggaggaatttgttagggattatgtattccctt 755  Q
    |||||||| ||||||||||  || || ||| |||| || || ||||| |||||||| ||||| |||||||||||||||||||  ||||| ||||| ||||    
T  18854846 gaattggacggtttagaagctaaagccaaatccagtggggcatctcaattagtcgtaaaggacttgaaggaggaatttgttaaagattacgtatttcctt 18854747  T
Q  756 gcctgcgtgccggtgcaattt 776  Q
    |||||||||| ||||| ||||    
T  18854746 gcctgcgtgctggtgctattt 18854726  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 399 - 459
Target Start/End: Complemental strand, 18855006 - 18854946
Alignment:
Q  399 tttcagagagaactatggctgtgatgttgtttgcttcactgctgatctaggccaagtatgt 459  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||    
T  18855006 tttcagagagaattatggctgtgatgttgtttgcttcactgctgatgttggccaagtatgt 18854946  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 241 - 309
Target Start/End: Complemental strand, 18855299 - 18855231
Alignment:
Q  241 tgaataaggttgttctggcttatagtggtggcttagacacatcggttgttgtcccctggctgaggtata 309  Q
    |||||||||||||  ||||||| || ||||||||||||||||||||  ||||||| |||||||||||||    
T  18855299 tgaataaggttgtattggcttacagcggtggcttagacacatcggtcattgtcccatggctgaggtata 18855231  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 6760550 - 6760514
Alignment:
Q  27 aataataatttgagaaaattgaagtgattaaatgtaa 63  Q
    |||||||||||||||||||| ||||||||||||||||    
T  6760550 aataataatttgagaaaatttaagtgattaaatgtaa 6760514  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 3523373 - 3523433
Alignment:
Q  3 acacgacactaacacatagacgccaataataatttgagaaaattgaagtgattaaatgtaa 63  Q
    |||||||||| |||| ||||| || |||||||||||| ||||| ||||||||| |||||||    
T  3523373 acacgacactgacacgtagacaccgataataatttgataaaatagaagtgattgaatgtaa 3523433  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 52156819 - 52156777
Alignment:
Q  14 acacatagacgccaataataatttgagaaaattgaagtgatta 56  Q
    |||||||||||| |||||||| |||||||||| ||||||||||    
T  52156819 acacatagacgctaataataacttgagaaaatggaagtgatta 52156777  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 438734 - 438696
Alignment:
Q  25 ccaataataatttgagaaaattgaagtgattaaatgtaa 63  Q
    ||||||||||||| ||||||||||||| |||||||||||    
T  438734 ccaataataatttaagaaaattgaagtaattaaatgtaa 438696  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 497 - 535
Target Start/End: Original strand, 26004210 - 26004248
Alignment:
Q  497 gtatataaaatccttcaatttagtccctgctattaagat 535  Q
    ||||||||||||| ||||||||||||||| |||||||||    
T  26004210 gtatataaaatccatcaatttagtccctgatattaagat 26004248  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 4323114 - 4323147
Alignment:
Q  28 ataataatttgagaaaattgaagtgattaaatgt 61  Q
    |||| |||||||||||||||||||||||||||||    
T  4323114 ataacaatttgagaaaattgaagtgattaaatgt 4323147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 32926352 - 32926315
Alignment:
Q  18 atagacgccaataataatttgagaaaattgaagtgatt 55  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  32926352 atagacaccaataataatttaagaaaattgaagtgatt 32926315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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